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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRD5A3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
59.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
51.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
50.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
45.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
44.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
41.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
37.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
34.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
33.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
32.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
30.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
30.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
29.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
29.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
28.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
28.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
28.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
27.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
27.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
26.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
24.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
24.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
20.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
18.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
17.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
15.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRD5A3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.1
Number of samples
231
Samples
Sample
Description
TPM
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
4.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
3.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
3.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
698
Normal
17.4
1045
Tumor
14.5
1046
Normal
13.9
535
Tumor
13.1
536
Normal
13.1
482
Normal
3.1
1042
Normal
1.9
533
Tumor
1.3
642
Normal
1.1
813
Tumor
1.0
874
Normal
1.0
1016
Normal
1.0
976
Normal
0.9
858
Normal
0.9
311
Tumor
0.9
913
Tumor
0.8
1021
Tumor
0.7
777
Tumor
0.7
864
Normal
0.7
914
Normal
0.7
327
Tumor
0.6
866
Normal
0.6
785
Tumor
0.6
755
Tumor
0.6
527
Tumor
0.6
863
Tumor
0.6
413
Tumor
0.6
491
Tumor
0.6
823
Tumor
0.6
492
Normal
0.5
258
Normal
0.5
128
Normal
0.5
498
Normal
0.5
954
Normal
0.5
877
Tumor
0.5
881
Tumor
0.5
537
Tumor
0.5
212
Normal
0.4
857
Tumor
0.4
618
Normal
0.4
355
Tumor
0.4
523
Tumor
0.4
545
Tumor
0.4
228
Normal
0.4
778
Normal
0.4
617
Tumor
0.4
571
Tumor
0.4
553
Tumor
0.4
981
Tumor
0.4
493
Tumor
0.4
261
Tumor
0.4
262
Normal
0.4
286
Normal
0.4
558
Normal
0.4
232
Normal
0.4
515
Tumor
0.3
461
Tumor
0.3
883
Tumor
0.3
227
Tumor
0.3
722
Normal
0.3
1022
Normal
0.3
284
Normal
0.3
272
Normal
0.3
526
Normal
0.3
224
Normal
0.3
746
Normal
0.3
564
Normal
0.3
283
Tumor
0.3
716
Normal
0.3
356
Normal
0.3
574
Normal
0.3
965
Tumor
0.3
268
Normal
0.3
267
Tumor
0.3
412
Normal
0.3
686
Normal
0.2
518
Normal
0.2
977
Tumor
0.2
951
Tumor
0.2
357
Tumor
0.2
1041
Tumor
0.2
911
Tumor
0.2
342
Normal
0.2
786
Normal
0.2
257
Tumor
0.2
1032
Normal
0.2
714
Normal
0.2
696
Normal
0.2
745
Tumor
0.2
364
Normal
0.2
715
Tumor
0.2
514
Normal
0.2
815
Tumor
0.2
161
Tumor
0.2
513
Tumor
0.2
162
Normal
0.2
952
Normal
0.2
436
Normal
0.2
756
Normal
0.2
445
Tumor
0.2
744
Normal
0.1
943
Tumor
0.1
516
Normal
0.1
444
Normal
0.1
557
Tumor
0.1
563
Tumor
0.1
882
Normal
0.1
671
Tumor
0.1
573
Tumor
0.1
818
Normal
0.1
572
Normal
0.1
343
Tumor
0.1
328
Normal
0.1
814
Normal
0.1
1031
Tumor
0.1
172
Normal
0.1
431
Tumor
0.1
446
Normal
0.1
433
Tumor
0.1
434
Normal
0.1
424
Normal
0.1
525
Tumor
0.1
354
Normal
0.1
817
Tumor
0.1
187
Tumor
0.1
884
Normal
0.1
912
Normal
0.1
685
Tumor
0.1
435
Tumor
0.1
524
Normal
0.0
494
Normal
0.0
416
Normal
0.0
615
Tumor
0.0
695
Tumor
0.0
148
Normal
0.0
713
Tumor
0.0
483
Tumor
0.0
352
Normal
0.0
1028
Normal
0.0
111
Normal
0.0
353
Tumor
0.0
462
Normal
0.0
953
Tumor
0.0
636
Normal
0.0
728
Normal
0.0
824
Normal
0.0
868
Normal
0.0
171
Tumor
0.0
185
Tumor
0.0
428
Normal
0.0
114
Normal
0.0
231
Tumor
0.0
423
Tumor
0.0
672
Normal
0.0
1015
Tumor
-0.1
955
Tumor
-0.1
568
Normal
-0.1
211
Tumor
-0.1
432
Normal
-0.1
1027
Tumor
-0.1
1026
Normal
-0.1
472
Normal
-0.1
415
Tumor
-0.1
964
Normal
-0.1
878
Normal
-0.1
488
Normal
-0.1
724
Normal
-0.1
312
Normal
-0.1
474
Normal
-0.1
411
Tumor
-0.1
484
Normal
-0.1
414
Normal
-0.1
982
Normal
-0.1
314
Normal
-0.1
517
Tumor
-0.1
1014
Normal
-0.1
661
Tumor
-0.2
851
Tumor
-0.2
662
Normal
-0.2
816
Normal
-0.2
852
Normal
-0.2
313
Tumor
-0.2
271
Tumor
-0.2
984
Normal
-0.2
278
Normal
-0.2
363
Tumor
-0.2
497
Tumor
-0.2
188
Normal
-0.2
983
Tumor
-0.2
721
Tumor
-0.2
341
Tumor
-0.2
968
Normal
-0.2
628
Normal
-0.2
975
Tumor
-0.2
944
Normal
-0.3
481
Tumor
-0.3
332
Normal
-0.3
957
Tumor
-0.3
285
Tumor
-0.3
125
Tumor
-0.3
958
Normal
-0.3
663
Tumor
-0.3
126
Normal
-0.3
616
Normal
-0.3
186
Normal
-0.3
358
Normal
-0.3
344
Normal
-0.3
422
Normal
-0.3
297
Tumor
-0.3
298
Normal
-0.3
956
Normal
-0.3
627
Tumor
-0.3
978
Normal
-0.3
528
Normal
-0.3
421
Tumor
-0.3
223
Tumor
-0.3
427
Tumor
-0.4
966
Normal
-0.4
127
Tumor
-0.4
443
Tumor
-0.4
963
Tumor
-0.4
664
Normal
-0.4
665
Tumor
-0.4
426
Normal
-0.4
1013
Tumor
-0.4
567
Tumor
-0.4
478
Normal
-0.4
331
Tumor
-0.5
967
Tumor
-0.5
277
Tumor
-0.5
112
Tumor
-0.5
113
Tumor
-0.5
1025
Tumor
-0.5
538
Normal
-0.5
487
Tumor
-0.5
124
Normal
-0.5
867
Tumor
-0.5
873
Tumor
-0.6
147
Tumor
-0.6
666
Normal
-0.6
648
Normal
-0.6
938
Normal
-0.6
123
Tumor
-0.6
635
Tumor
-0.6
554
Normal
-0.7
937
Tumor
-0.7
741
Tumor
-0.7
738
Normal
-0.7
477
Tumor
-0.7
727
Tumor
-0.7
647
Tumor
-0.7
351
Tumor
-0.8
471
Tumor
-0.8
546
Normal
-0.8
862
Normal
-0.8
723
Tumor
-0.9
641
Tumor
-0.9
473
Tumor
-0.9
861
Tumor
-0.9
742
Normal
-0.9
865
Tumor
-1.0
425
Tumor
-1.0
534
Normal
-1.1
737
Tumor
-1.2
743
Tumor
-1.6
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
388
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
463
Tumor
N/A
222
Normal
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
