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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTPN12 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
73.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
71.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
55.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
47.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
42.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
42.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
41.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
40.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
36.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
35.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
35.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
33.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
33.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
32.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
31.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
29.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
28.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
26.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
25.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
24.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
23.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
21.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
19.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTPN12 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.1
Number of samples
231
Samples
Sample
Description
TPM
DO45279
0 years, male, NA, stage:3, alive, 1290 days
84.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
69.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
69.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
67.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
66.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
66.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
62.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
60.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
58.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
55.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
53.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
53.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
52.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
51.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
51.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
50.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
48.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
47.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
47.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
47.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
43.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
42.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
41.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
41.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
41.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
41.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
41.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
41.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
39.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
39.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
38.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
38.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
38.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
37.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
37.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
37.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
36.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
36.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
36.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
36.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
35.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
35.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
35.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
35.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
34.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
34.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
34.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
34.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
33.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
33.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
33.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
33.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
33.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
33.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
33.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
32.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
32.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
31.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
31.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
31.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
31.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
30.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
30.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
30.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
29.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
29.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
28.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
27.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
26.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
26.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
25.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
25.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
25.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
25.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
25.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
23.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
22.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
21.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
21.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
20.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.1
211
Tumor
1.1
455
Tumor
0.8
425
Tumor
0.8
131
Tumor
0.8
283
Tumor
0.8
671
Tumor
0.8
311
Tumor
0.7
957
Tumor
0.7
917
Tumor
0.7
813
Tumor
0.7
231
Tumor
0.6
983
Tumor
0.6
537
Tumor
0.6
921
Tumor
0.6
447
Tumor
0.6
1031
Tumor
0.6
125
Tumor
0.6
331
Tumor
0.6
517
Tumor
0.5
851
Tumor
0.5
965
Tumor
0.5
815
Tumor
0.5
915
Tumor
0.5
943
Tumor
0.5
661
Tumor
0.5
535
Tumor
0.5
737
Tumor
0.5
471
Tumor
0.5
857
Tumor
0.5
498
Normal
0.5
967
Tumor
0.4
533
Tumor
0.4
814
Normal
0.4
975
Tumor
0.4
297
Tumor
0.4
351
Tumor
0.4
483
Tumor
0.4
563
Tumor
0.4
536
Normal
0.4
1025
Tumor
0.4
477
Tumor
0.4
491
Tumor
0.4
545
Tumor
0.4
1013
Tumor
0.4
395
Tumor
0.4
525
Tumor
0.4
881
Tumor
0.4
385
Tumor
0.4
861
Tumor
0.4
137
Tumor
0.4
285
Tumor
0.4
375
Tumor
0.4
195
Tumor
0.4
665
Tumor
0.4
473
Tumor
0.4
697
Tumor
0.4
713
Tumor
0.3
724
Normal
0.3
147
Tumor
0.3
937
Tumor
0.3
963
Tumor
0.3
1043
Tumor
0.3
641
Tumor
0.3
573
Tumor
0.3
492
Normal
0.3
617
Tumor
0.3
421
Tumor
0.3
343
Tumor
0.3
745
Tumor
0.3
463
Tumor
0.3
191
Tumor
0.3
223
Tumor
0.3
365
Tumor
0.3
413
Tumor
0.3
553
Tumor
0.3
877
Tumor
0.2
527
Tumor
0.2
487
Tumor
0.2
213
Tumor
0.2
497
Tumor
0.2
524
Normal
0.2
135
Tumor
0.2
187
Tumor
0.2
955
Tumor
0.2
981
Tumor
0.2
715
Tumor
0.2
977
Tumor
0.2
1021
Tumor
0.2
481
Tumor
0.2
415
Tumor
0.2
727
Tumor
0.2
913
Tumor
0.2
538
Normal
0.2
954
Normal
0.2
528
Normal
0.2
966
Normal
0.2
916
Normal
0.2
785
Tumor
0.2
257
Tumor
0.2
353
Tumor
0.2
557
Tumor
0.2
268
Normal
0.2
171
Tumor
0.2
923
Tumor
0.2
925
Tumor
0.1
523
Tumor
0.1
976
Normal
0.1
391
Tumor
0.1
883
Tumor
0.1
393
Tumor
0.1
911
Tumor
0.1
647
Tumor
0.1
224
Normal
0.1
467
Tumor
0.1
313
Tumor
0.1
445
Tumor
0.1
427
Tumor
0.1
958
Normal
0.1
217
Tumor
0.1
261
Tumor
0.1
286
Normal
0.1
918
Normal
0.1
755
Tumor
0.1
444
Normal
0.1
431
Tumor
0.1
192
Normal
0.1
984
Normal
0.1
635
Tumor
0.1
355
Tumor
0.1
383
Tumor
0.1
721
Tumor
0.1
188
Normal
0.1
968
Normal
0.1
416
Normal
0.1
513
Tumor
0.1
284
Normal
0.1
518
Normal
0.1
978
Normal
0.1
386
Normal
0.1
461
Tumor
0.1
221
Tumor
0.1
478
Normal
0.1
817
Tumor
0.1
951
Tumor
0.1
944
Normal
0.1
493
Tumor
0.0
363
Tumor
0.0
411
Tumor
0.0
451
Tumor
0.0
145
Tumor
0.0
113
Tumor
0.0
424
Normal
0.0
672
Normal
0.0
1015
Tumor
0.0
124
Normal
0.0
414
Normal
0.0
141
Tumor
0.0
884
Normal
0.0
1045
Tumor
0.0
277
Tumor
0.0
952
Normal
0.0
327
Tumor
0.0
558
Normal
0.0
367
Tumor
0.0
434
Normal
0.0
361
Tumor
0.0
778
Normal
0.0
428
Normal
0.0
126
Normal
0.0
823
Tumor
0.0
227
Tumor
0.0
426
Normal
0.0
127
Tumor
0.0
328
Normal
0.0
662
Normal
0.0
696
Normal
0.0
368
Normal
0.0
262
Normal
0.0
218
Normal
0.0
344
Normal
0.0
956
Normal
0.0
271
Tumor
0.0
332
Normal
0.0
786
Normal
0.0
228
Normal
0.0
396
Normal
0.0
212
Normal
0.0
636
Normal
0.0
816
Normal
0.0
161
Tumor
0.0
874
Normal
0.0
777
Tumor
0.0
341
Tumor
0.0
666
Normal
0.0
1028
Normal
-0.1
387
Tumor
-0.1
314
Normal
-0.1
516
Normal
-0.1
852
Normal
-0.1
865
Tumor
-0.1
982
Normal
-0.1
352
Normal
-0.1
435
Tumor
-0.1
422
Normal
-0.1
488
Normal
-0.1
526
Normal
-0.1
1041
Tumor
-0.1
615
Tumor
-0.1
953
Tumor
-0.1
111
Normal
-0.1
433
Tumor
-0.1
574
Normal
-0.1
232
Normal
-0.1
627
Tumor
-0.1
446
Normal
-0.1
114
Normal
-0.1
722
Normal
-0.1
882
Normal
-0.1
138
Normal
-0.1
484
Normal
-0.1
123
Tumor
-0.1
914
Normal
-0.1
534
Normal
-0.1
514
Normal
-0.1
364
Normal
-0.1
878
Normal
-0.1
148
Normal
-0.1
867
Tumor
-0.1
866
Normal
-0.1
392
Normal
-0.1
664
Normal
-0.1
482
Normal
-0.1
362
Normal
-0.1
312
Normal
-0.1
468
Normal
-0.1
272
Normal
-0.1
185
Tumor
-0.1
628
Normal
-0.1
474
Normal
-0.1
258
Normal
-0.1
873
Tumor
-0.1
494
Normal
-0.1
648
Normal
-0.1
214
Normal
-0.1
1046
Normal
-0.1
394
Normal
-0.1
1044
Normal
-0.1
695
Tumor
-0.1
384
Normal
-0.1
136
Normal
-0.1
515
Tumor
-0.1
964
Normal
-0.1
472
Normal
-0.1
926
Normal
-0.1
546
Normal
-0.1
1042
Normal
-0.2
663
Tumor
-0.2
572
Normal
-0.2
443
Tumor
-0.2
358
Normal
-0.2
554
Normal
-0.2
142
Normal
-0.2
448
Normal
-0.2
432
Normal
-0.2
938
Normal
-0.2
714
Normal
-0.2
172
Normal
-0.2
376
Normal
-0.2
146
Normal
-0.2
356
Normal
-0.2
162
Normal
-0.2
1016
Normal
-0.2
412
Normal
-0.2
922
Normal
-0.2
464
Normal
-0.2
456
Normal
-0.2
716
Normal
-0.2
924
Normal
-0.2
278
Normal
-0.2
568
Normal
-0.2
462
Normal
-0.2
186
Normal
-0.2
868
Normal
-0.2
567
Tumor
-0.2
366
Normal
-0.2
423
Tumor
-0.2
756
Normal
-0.2
864
Normal
-0.2
744
Normal
-0.2
858
Normal
-0.3
132
Normal
-0.3
1014
Normal
-0.3
824
Normal
-0.3
686
Normal
-0.3
564
Normal
-0.3
642
Normal
-0.3
685
Tumor
-0.3
196
Normal
-0.3
466
Normal
-0.3
741
Tumor
-0.3
723
Tumor
-0.3
298
Normal
-0.3
912
Normal
-0.3
1032
Normal
-0.3
354
Normal
-0.3
863
Tumor
-0.3
1022
Normal
-0.3
698
Normal
-0.3
222
Normal
-0.3
128
Normal
-0.3
267
Tumor
-0.3
742
Normal
-0.3
862
Normal
-0.3
571
Tumor
-0.3
112
Tumor
-0.3
738
Normal
-0.3
728
Normal
-0.4
746
Normal
-0.4
818
Normal
-0.4
388
Normal
-0.4
1026
Normal
-0.4
436
Normal
-0.4
618
Normal
-0.4
452
Normal
-0.4
616
Normal
-0.4
465
Tumor
-0.4
357
Tumor
-0.5
342
Normal
-0.5
1027
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
