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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEM1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
318.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2058.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
854.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
781.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
741.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
726.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
706.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
685.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
647.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
635.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
619.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
617.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
613.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
591.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
579.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
566.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
564.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
556.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
555.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
531.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
531.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
529.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
521.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
514.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
511.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
507.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
502.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
500.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
494.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
493.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
491.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
491.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
488.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
483.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
479.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
471.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
468.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
467.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
466.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
462.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
456.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
456.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
452.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
449.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
448.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
447.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
446.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
443.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
441.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
440.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
440.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
440.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
435.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
435.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
433.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
430.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
429.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
429.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
428.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
424.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
424.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
420.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
418.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
416.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
414.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
412.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
409.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
405.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
405.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
403.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
403.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
402.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
400.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
398.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
396.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
394.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
393.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
393.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
393.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
393.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
392.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
391.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
391.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
388.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
388.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
386.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
386.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
385.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
384.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
384.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
382.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
381.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
380.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
378.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
378.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
378.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
374.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
372.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
372.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
372.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
371.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
371.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
368.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
368.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
366.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
362.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
362.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
361.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
361.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
360.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
360.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
357.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
354.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
353.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
352.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
350.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
350.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
350.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
349.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
349.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
348.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
347.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
347.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
347.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
347.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
345.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
343.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
343.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
343.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
342.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
340.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
340.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
338.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
337.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
336.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
335.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
334.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
333.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
333.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
333.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
332.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
332.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
332.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
331.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
329.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
328.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
327.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
327.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
326.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
326.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
324.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
324.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
324.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
323.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
322.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
322.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
321.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
321.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
321.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
320.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
320.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
320.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
318.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
318.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
318.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
316.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
315.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
313.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
313.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
312.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
312.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
310.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
310.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
309.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
308.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
307.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
303.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
303.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
303.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
300.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
299.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
299.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
299.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
298.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
296.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
295.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
295.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
295.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
293.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
291.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
291.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
291.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
288.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
287.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
285.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
284.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
284.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
282.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
282.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
282.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
281.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
281.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
280.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
280.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
279.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
278.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
277.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
277.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
277.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
276.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
273.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
273.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
271.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
270.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
269.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
268.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
267.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
267.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
267.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
266.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
265.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
263.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
263.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
261.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
261.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
260.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
259.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
255.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
255.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
255.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
254.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
254.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
253.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
251.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
250.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
249.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
248.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
248.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
247.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
245.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
245.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
245.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
244.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
243.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
243.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
242.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
240.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
240.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
240.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
240.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
240.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
239.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
239.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
239.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
236.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
236.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
235.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
235.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
235.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
234.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
233.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
233.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
233.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
233.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
232.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
232.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
232.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
231.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
231.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
230.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
229.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
229.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
228.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
227.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
227.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
226.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
225.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
224.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
222.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
222.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
221.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
221.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
220.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
218.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
218.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
218.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
218.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
217.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
216.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
214.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
214.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
213.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
213.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
212.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
212.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
211.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
211.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
211.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
211.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
211.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
210.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
210.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
209.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
208.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
207.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
205.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
203.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
201.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
200.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
200.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
199.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
197.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
196.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
195.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
195.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
194.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
190.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
190.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
189.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
189.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
188.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
188.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
186.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
186.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
183.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
182.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
182.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
181.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
174.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
174.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
173.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
171.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
171.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
167.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
166.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
162.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
162.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
162.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
161.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
159.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
158.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
153.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
153.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
153.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
149.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
146.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
145.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
142.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
140.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
135.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
134.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
132.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
132.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
129.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
129.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
126.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
123.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
122.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
116.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
116.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
108.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
102.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.