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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLEKHG3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
47.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
41.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
34.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
33.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLEKHG3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.4
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
37.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
31.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
27.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
25.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1025
Tumor
1.4
477
Tumor
1.0
863
Tumor
1.0
497
Tumor
0.8
445
Tumor
0.8
413
Tumor
0.8
471
Tumor
0.8
527
Tumor
0.7
271
Tumor
0.7
385
Tumor
0.7
387
Tumor
0.7
363
Tumor
0.7
975
Tumor
0.7
435
Tumor
0.7
463
Tumor
0.7
967
Tumor
0.7
431
Tumor
0.6
743
Tumor
0.6
227
Tumor
0.6
881
Tumor
0.6
455
Tumor
0.6
737
Tumor
0.5
924
Normal
0.5
641
Tumor
0.5
785
Tumor
0.5
267
Tumor
0.5
635
Tumor
0.5
285
Tumor
0.5
727
Tumor
0.5
481
Tumor
0.5
473
Tumor
0.5
647
Tumor
0.5
815
Tumor
0.5
533
Tumor
0.5
713
Tumor
0.5
221
Tumor
0.4
746
Normal
0.4
137
Tumor
0.4
261
Tumor
0.4
365
Tumor
0.4
878
Normal
0.4
957
Tumor
0.4
873
Tumor
0.4
127
Tumor
0.4
472
Normal
0.4
478
Normal
0.4
393
Tumor
0.4
851
Tumor
0.4
627
Tumor
0.4
925
Tumor
0.4
963
Tumor
0.4
423
Tumor
0.4
922
Normal
0.3
882
Normal
0.3
745
Tumor
0.3
461
Tumor
0.3
447
Tumor
0.3
617
Tumor
0.3
537
Tumor
0.3
1032
Normal
0.3
568
Normal
0.3
698
Normal
0.3
965
Tumor
0.3
722
Normal
0.3
513
Tumor
0.3
493
Tumor
0.3
196
Normal
0.3
554
Normal
0.3
778
Normal
0.3
714
Normal
0.3
671
Tumor
0.3
563
Tumor
0.3
433
Tumor
0.3
448
Normal
0.3
954
Normal
0.3
1022
Normal
0.3
738
Normal
0.3
488
Normal
0.3
1044
Normal
0.3
425
Tumor
0.2
286
Normal
0.2
944
Normal
0.2
723
Tumor
0.2
616
Normal
0.2
958
Normal
0.2
672
Normal
0.2
661
Tumor
0.2
426
Normal
0.2
498
Normal
0.2
572
Normal
0.2
351
Tumor
0.2
777
Tumor
0.2
443
Tumor
0.2
926
Normal
0.2
696
Normal
0.2
857
Tumor
0.2
938
Normal
0.2
818
Normal
0.2
648
Normal
0.2
191
Tumor
0.2
913
Tumor
0.2
482
Normal
0.2
546
Normal
0.2
977
Tumor
0.2
523
Tumor
0.2
524
Normal
0.2
534
Normal
0.2
464
Normal
0.2
462
Normal
0.2
277
Tumor
0.2
952
Normal
0.2
112
Tumor
0.2
1045
Tumor
0.2
983
Tumor
0.2
113
Tumor
0.2
474
Normal
0.2
528
Normal
0.2
428
Normal
0.2
135
Tumor
0.2
824
Normal
0.2
982
Normal
0.1
918
Normal
0.1
352
Normal
0.1
494
Normal
0.1
921
Tumor
0.1
813
Tumor
0.1
916
Normal
0.1
298
Normal
0.1
642
Normal
0.1
1043
Tumor
0.1
756
Normal
0.1
465
Tumor
0.1
484
Normal
0.1
436
Normal
0.1
284
Normal
0.1
342
Normal
0.1
376
Normal
0.1
392
Normal
0.1
526
Normal
0.1
412
Normal
0.1
557
Tumor
0.1
444
Normal
0.1
131
Tumor
0.1
742
Normal
0.1
268
Normal
0.1
142
Normal
0.1
1026
Normal
0.1
695
Tumor
0.1
128
Normal
0.1
391
Tumor
0.1
1027
Tumor
0.1
222
Normal
0.1
186
Normal
0.1
361
Tumor
0.1
341
Tumor
0.1
367
Tumor
0.1
697
Tumor
0.1
1028
Normal
0.1
1046
Normal
0.1
966
Normal
0.1
126
Normal
0.1
331
Tumor
0.1
383
Tumor
0.1
943
Tumor
0.1
976
Normal
0.1
124
Normal
0.1
195
Tumor
0.1
968
Normal
0.1
358
Normal
0.1
664
Normal
0.1
468
Normal
0.1
956
Normal
0.1
744
Normal
0.1
514
Normal
0.1
213
Tumor
0.1
852
Normal
0.1
456
Normal
0.1
353
Tumor
0.1
297
Tumor
0.1
721
Tumor
0.1
185
Tumor
0.1
883
Tumor
0.1
728
Normal
0.1
356
Normal
0.1
538
Normal
0.1
814
Normal
0.1
354
Normal
0.1
786
Normal
0.1
536
Normal
0.1
955
Tumor
0.1
217
Tumor
0.1
666
Normal
0.1
1031
Tumor
0.1
357
Tumor
0.0
344
Normal
0.0
384
Normal
0.0
422
Normal
0.0
114
Normal
0.0
492
Normal
0.0
618
Normal
0.0
162
Normal
0.0
232
Normal
0.0
328
Normal
0.0
862
Normal
0.0
864
Normal
0.0
964
Normal
0.0
424
Normal
0.0
662
Normal
0.0
386
Normal
0.0
716
Normal
0.0
553
Tumor
0.0
978
Normal
0.0
665
Tumor
0.0
427
Tumor
0.0
414
Normal
0.0
1021
Tumor
0.0
866
Normal
0.0
1042
Normal
0.0
148
Normal
0.0
518
Normal
0.0
858
Normal
0.0
214
Normal
0.0
192
Normal
0.0
314
Normal
0.0
741
Tumor
0.0
865
Tumor
0.0
313
Tumor
0.0
564
Normal
0.0
516
Normal
0.0
224
Normal
0.0
823
Tumor
0.0
1041
Tumor
0.0
816
Normal
0.0
884
Normal
0.0
984
Normal
0.0
483
Tumor
0.0
874
Normal
0.0
146
Normal
0.0
375
Tumor
0.0
628
Normal
0.0
218
Normal
0.0
515
Tumor
0.0
545
Tumor
0.0
1014
Normal
0.0
228
Normal
0.0
132
Normal
0.0
396
Normal
0.0
364
Normal
0.0
223
Tumor
0.0
755
Tumor
0.0
817
Tumor
-0.1
558
Normal
-0.1
615
Tumor
-0.1
416
Normal
-0.1
686
Normal
-0.1
212
Normal
-0.1
368
Normal
-0.1
111
Normal
-0.1
1016
Normal
-0.1
147
Tumor
-0.1
636
Normal
-0.1
466
Normal
-0.1
258
Normal
-0.1
937
Tumor
-0.1
394
Normal
-0.1
535
Tumor
-0.1
953
Tumor
-0.1
868
Normal
-0.1
141
Tumor
-0.1
981
Tumor
-0.1
912
Normal
-0.1
432
Normal
-0.1
262
Normal
-0.1
272
Normal
-0.1
388
Normal
-0.1
446
Normal
-0.1
278
Normal
-0.1
467
Tumor
-0.1
332
Normal
-0.1
188
Normal
-0.2
312
Normal
-0.2
136
Normal
-0.2
452
Normal
-0.2
914
Normal
-0.2
172
Normal
-0.2
187
Tumor
-0.2
366
Normal
-0.2
415
Tumor
-0.2
311
Tumor
-0.2
451
Tumor
-0.2
517
Tumor
-0.2
145
Tumor
-0.2
911
Tumor
-0.2
411
Tumor
-0.2
421
Tumor
-0.2
434
Normal
-0.2
663
Tumor
-0.2
138
Normal
-0.2
574
Normal
-0.2
715
Tumor
-0.2
923
Tumor
-0.2
917
Tumor
-0.2
571
Tumor
-0.2
362
Normal
-0.2
724
Normal
-0.3
1015
Tumor
-0.3
211
Tumor
-0.3
125
Tumor
-0.3
867
Tumor
-0.3
231
Tumor
-0.4
1013
Tumor
-0.4
355
Tumor
-0.4
491
Tumor
-0.4
343
Tumor
-0.4
327
Tumor
-0.4
161
Tumor
-0.5
685
Tumor
-0.5
877
Tumor
-0.5
123
Tumor
-0.5
525
Tumor
-0.5
573
Tumor
-0.5
951
Tumor
-0.5
257
Tumor
-0.6
487
Tumor
-0.6
567
Tumor
-0.6
915
Tumor
-0.6
395
Tumor
-0.7
171
Tumor
-0.7
283
Tumor
-0.7
861
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
