MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.8 nTPM
HPA Brain:36.5 nTPM
GTEx:14.8 nTPM
FANTOM5:53.2 Scaled Tags Per Million
Pig:10.5 nTPM
Mouse:2.6 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 36.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.1
2019 Male, age 18, unknown 38.8
2411 Female, age 72, unknown 36.9
1833 Male, age 53, unknown 35.3
1830 Male, age 51, unknown 34.5
2666 Male, age 74, left hemisphere 33.4
1870 Female, age 42, unknown 29.5
1827 Male, age 72, unknown 28.8
2828 Female, age 72, unknown 27.1
2586 Male, age 75, left hemisphere 24.3
2219 Male, age 76, both hemispheres 22.5
Dorsal raphe nucleus
nTPM: 31.8
2016 Female, age 72, unknown 36.1
2750 Male, age 76, both hemispheres 31.7
2047 Male, age 72, unknown 31.3
1828 Male, age 53, unknown 30.5
2298 Female, age 72, unknown 29.3
Inferior colliculus
nTPM: 30.8
1890 Male, age 53, unknown 31.7
1848 Female, age 42, unknown 31.4
2097 Female, age 72, unknown 31.0
2849 Male, age 72, unknown 29.3
Median raphe nucleus
nTPM: 29.9
2220 Male, age 76, midline 29.9
Periaquaductal grey, anterior
nTPM: 31.9
1947 Male, age 18, unknown 35.2
2502 Female, age 75, unknown 32.2
1795 Male, age 51, unknown 28.4
Periaquaductal grey, dorsal
nTPM: 34.3
1831 Male, age 72, unknown 36.9
2464 Female, age 72, unknown 36.3
2850 Male, age 76, both hemispheres 34.6
1840 Male, age 53, unknown 29.5
Periaquaductal grey, lateral
nTPM: 32.0
2053 Male, age 18, unknown 33.7
2272 Male, age 74, both hemispheres 33.5
2140 Male, age 76, both hemispheres 28.9
Pretectal area
nTPM: 35.4
2007 Male, age 72, unknown 43.5
1817 Female, age 42, unknown 41.0
1815 Male, age 53, unknown 40.7
1944 Female, age 72, unknown 40.1
2273 Male, age 74, both hemispheres 35.9
1816 Male, age 51, unknown 35.3
2407 Male, age 75, both hemispheres 32.7
2667 Female, age 75, unknown 32.6
2224 Female, age 72, unknown 31.3
2316 Male, age 76, right hemisphere 28.2
2825 Male, age 18, unknown 27.7
Red nucleus
nTPM: 36.5
1904 Male, age 53, unknown 40.6
2588 Male, age 74, left hemisphere 40.2
1865 Male, age 51, unknown 38.9
1821 Female, age 72, unknown 38.6
2785 Male, age 18, unknown 38.6
2823 Male, age 76, right hemisphere 38.2
2503 Female, age 72, unknown 36.4
2725 Female, age 75, unknown 36.4
1954 Female, age 42, unknown 34.6
2227 Male, age 72, unknown 34.4
2769 Male, age 72, unknown 32.0
2584 Male, age 75, left hemisphere 29.5
Substantia nigra
nTPM: 33.6
2409 Female, age 72, unknown 44.2
2583 Male, age 75, right hemisphere 38.7
1889 Female, age 72, unknown 37.9
2590 Female, age 75, unknown 35.6
2241 Male, age 72, unknown 31.8
1941 Male, age 53, unknown 31.3
2665 Male, age 74, both hemispheres 30.5
2699 Male, age 18, unknown 29.6
1851 Male, age 51, unknown 28.1
1916 Female, age 42, unknown 27.7
Superior colliculus
nTPM: 32.0
2587 Male, age 74, left hemisphere 37.0
1913 Female, age 42, unknown 35.3
1995 Male, age 72, unknown 33.8
1839 Male, age 51, unknown 33.7
2087 Female, age 72, unknown 33.7
1895 Male, age 76, right hemisphere 32.2
2668 Female, age 75, unknown 31.5
1796 Male, age 53, unknown 28.9
2261 Male, age 18, unknown 28.9
2664 Male, age 75, both hemispheres 25.3
Ventral tegmental area
nTPM: 31.9
2410 Female, age 72, unknown 37.6
2223 Female, age 72, unknown 33.3
1942 Male, age 51, unknown 32.7
2218 Male, age 76, both hemispheres 30.1
2021 Male, age 53, unknown 29.1
1915 Female, age 42, unknown 28.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.8
Samples: 139

Max nTPM: 28.6
Min nTPM: 7.1
Std nTPM: 3.7
Median nTPM: 14.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 28.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 27.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 25.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 25.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 22.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 22.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 22.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 21.4
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 21.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 21.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 20.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 53.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.2
FF:10158-103A5 76 years, female 53.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 10.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.5
Samples: 4

Max nTPM: 11.3
Min nTPM: 9.2
Sample A Female 10.7
Sample B Female 11.3
Sample C Male 9.2
Sample D Male 10.6
Midbrain
nTPM: 10.1
Samples: 4

Max nTPM: 12.8
Min nTPM: 8.0
Sample A Female 12.8
Sample B Female 10.6
Sample C Male 9.1
Sample D Male 8.0
Periaqueductal gray
nTPM: 9.7
Samples: 3

Max nTPM: 9.8
Min nTPM: 9.4
Sample B Female 9.8
Sample C Male 9.8
Sample D Male 9.4
Superior colliculi
nTPM: 10.5
Samples: 4

Max nTPM: 11.1
Min nTPM: 9.9
Sample A Female 10.3
Sample B Female 11.1
Sample C Male 10.6
Sample D Male 9.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.7
Samples: 4

Max nTPM: 2.8
Min nTPM: 2.5
Sample A Male 2.5
Sample B Male 2.6
Sample C Female 2.7
Sample D Female 2.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
74990493 Antisense, RP_060410_01_B03, Mouse strain C57BL/6J (56 days, male) 0.6

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