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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SBDS is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
54.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
153.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
138.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
129.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
120.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
120.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
118.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
117.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
114.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
109.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
109.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
108.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
108.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
104.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
102.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
100.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
99.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
98.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
98.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
97.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
97.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
95.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
88.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
88.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
86.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
86.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
84.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
84.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
83.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
83.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
82.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
82.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
82.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
81.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
81.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
81.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
79.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
78.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
78.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
78.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
77.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
77.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
76.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
76.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
76.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
75.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
74.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
74.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
73.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
73.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
73.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
72.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
72.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
72.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
71.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
71.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
71.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
70.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
70.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
70.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
70.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
69.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
69.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
69.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
69.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
69.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
69.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
68.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
68.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
68.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
68.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
67.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
67.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
66.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
66.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
66.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
66.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
66.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
65.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
65.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
65.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
65.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
65.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
65.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
65.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
64.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
64.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
64.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
64.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
64.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
64.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
64.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
64.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
64.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
64.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
64.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
63.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
63.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
63.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
63.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
62.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
62.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
61.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
61.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
61.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
61.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
61.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
61.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
61.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
61.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
61.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
60.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
60.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
60.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
60.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
60.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
60.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
59.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
59.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
59.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
59.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
59.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
59.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
59.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
59.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
59.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
59.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
59.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
58.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
58.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
58.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
58.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
58.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
58.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
58.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
57.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
57.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
57.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
57.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
57.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
57.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
57.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
57.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
57.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
56.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
56.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
56.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
56.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
56.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
56.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
55.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
55.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
55.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
55.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
55.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
55.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
55.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
55.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
54.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
54.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
54.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
54.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
54.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
54.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
54.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
54.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
53.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
53.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
53.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
53.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
53.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
53.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
53.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
53.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
53.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
53.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
52.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
52.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
52.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
52.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
52.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
52.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
52.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
51.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
51.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
51.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
51.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
51.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
51.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
51.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
51.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
51.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
51.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
50.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
50.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
50.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
50.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
50.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
50.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
50.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
49.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
49.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
49.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
49.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
49.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
49.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
49.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
49.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
48.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
48.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
48.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
48.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
48.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
48.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
48.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
47.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
47.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
47.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
47.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
47.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
47.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
46.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
46.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
46.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
46.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
46.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
46.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
46.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
46.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
46.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
45.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
45.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
45.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
45.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
45.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
45.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
45.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
45.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
45.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
44.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
44.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
44.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
44.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
44.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
44.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
44.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
44.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
43.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
43.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
43.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
43.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
43.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
43.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
43.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
43.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
43.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
43.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
43.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
42.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
42.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
42.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
42.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
42.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
42.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
42.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
42.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
42.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
42.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
42.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
41.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
41.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
41.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
41.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
41.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
40.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
40.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
39.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
39.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
39.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
39.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
39.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
39.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
39.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
39.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
38.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
38.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
38.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
37.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
37.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
37.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
37.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
37.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
37.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
37.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
37.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
37.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
37.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
36.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
36.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
36.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
36.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
36.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
35.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
35.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
35.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
35.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
34.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
34.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
34.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
34.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
34.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
34.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
34.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
33.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
33.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
33.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
33.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
33.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
33.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
32.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
32.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
32.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
31.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
31.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
31.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
31.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
31.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
30.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
30.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
30.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
30.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
30.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
30.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
28.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
28.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
27.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
26.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
26.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
26.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
25.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
24.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
23.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
23.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
22.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
22.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
22.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
22.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
21.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
19.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
16.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SBDS is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
54.9
Number of samples
231
Samples
Sample
Description
TPM
DO48746
0 years, male, NA, stage:3, alive, 570 days
131.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
123.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
123.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
113.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
112.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
112.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
106.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
104.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
104.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
103.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
100.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
99.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
94.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
93.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
93.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
88.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
87.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
87.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
86.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
85.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
84.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
82.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
82.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
80.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
78.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
78.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
78.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
77.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
76.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
76.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
75.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
75.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
75.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
74.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
74.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
73.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
72.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
71.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
71.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
70.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
69.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
69.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
68.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
67.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
67.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
67.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
67.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
67.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
66.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
66.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
66.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
65.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
65.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
65.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
65.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
65.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
64.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
63.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
63.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
62.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
62.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
62.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
62.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
62.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
62.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
61.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
61.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
61.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
61.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
60.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
59.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
59.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
59.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
58.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
58.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
58.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
58.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
58.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
58.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
58.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
58.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
57.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
57.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
57.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
57.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
57.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
57.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
56.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
56.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
56.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
56.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
56.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
55.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
55.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
55.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
55.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
54.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
54.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
54.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
54.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
53.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
53.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
53.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
53.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
53.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
53.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
52.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
52.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
52.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
52.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
52.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
51.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
51.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
50.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
50.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
50.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
50.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
50.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
49.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
49.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
49.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
49.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
49.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
49.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
49.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
49.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
49.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
49.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
48.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
48.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
48.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
48.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
48.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
48.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
48.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
48.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
48.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
48.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
48.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
47.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
47.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
47.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
47.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
46.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
46.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
46.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
46.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
46.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
46.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
45.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
45.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
45.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
45.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
45.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
44.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
44.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
44.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
44.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
44.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
44.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
44.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
43.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
43.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
43.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
43.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
42.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
42.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
42.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
41.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
41.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
41.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
41.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
40.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
40.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
40.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
40.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
40.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
40.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
39.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
39.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
39.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
39.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
39.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
38.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
38.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
38.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
38.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
38.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
38.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
38.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
37.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
37.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
37.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
37.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
36.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
36.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
36.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
35.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
35.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
35.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
35.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
35.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
34.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
34.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
34.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
34.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
34.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
33.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
33.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
32.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
32.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
32.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
32.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
32.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
31.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
31.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
30.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
30.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
30.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
28.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
27.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
26.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
24.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
24.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
483
Tumor
0.6
137
Tumor
0.6
967
Tumor
0.5
915
Tumor
0.4
445
Tumor
0.4
951
Tumor
0.4
515
Tumor
0.4
867
Tumor
0.4
431
Tumor
0.4
685
Tumor
0.4
785
Tumor
0.4
135
Tumor
0.4
481
Tumor
0.4
527
Tumor
0.3
557
Tumor
0.3
331
Tumor
0.3
538
Normal
0.3
455
Tumor
0.3
715
Tumor
0.3
697
Tumor
0.3
231
Tumor
0.2
958
Normal
0.2
1013
Tumor
0.2
261
Tumor
0.2
484
Normal
0.2
477
Tumor
0.2
964
Normal
0.2
1027
Tumor
0.2
471
Tumor
0.2
911
Tumor
0.2
1028
Normal
0.2
746
Normal
0.2
537
Tumor
0.2
977
Tumor
0.2
1021
Tumor
0.2
516
Normal
0.2
878
Normal
0.2
635
Tumor
0.2
223
Tumor
0.2
553
Tumor
0.2
546
Normal
0.2
1014
Normal
0.1
554
Normal
0.1
488
Normal
0.1
924
Normal
0.1
353
Tumor
0.1
435
Tumor
0.1
1022
Normal
0.1
883
Tumor
0.1
714
Normal
0.1
227
Tumor
0.1
778
Normal
0.1
952
Normal
0.1
968
Normal
0.1
342
Normal
0.1
922
Normal
0.1
1031
Tumor
0.1
448
Normal
0.1
963
Tumor
0.1
415
Tumor
0.1
147
Tumor
0.1
518
Normal
0.1
954
Normal
0.1
938
Normal
0.1
857
Tumor
0.1
498
Normal
0.1
411
Tumor
0.1
976
Normal
0.1
817
Tumor
0.1
351
Tumor
0.1
756
Normal
0.1
412
Normal
0.1
866
Normal
0.1
395
Tumor
0.1
534
Normal
0.1
722
Normal
0.1
864
Normal
0.1
124
Normal
0.1
851
Tumor
0.1
513
Tumor
0.1
786
Normal
0.1
128
Normal
0.1
376
Normal
0.1
738
Normal
0.1
698
Normal
0.1
741
Tumor
0.1
862
Normal
0.1
881
Tumor
0.1
955
Tumor
0.1
1041
Tumor
0.1
956
Normal
0.1
944
Normal
0.1
365
Tumor
0.1
492
Normal
0.1
423
Tumor
0.1
957
Tumor
0.1
696
Normal
0.1
298
Normal
0.0
713
Tumor
0.0
984
Normal
0.0
465
Tumor
0.0
132
Normal
0.0
616
Normal
0.0
744
Normal
0.0
494
Normal
0.0
641
Tumor
0.0
1032
Normal
0.0
142
Normal
0.0
123
Tumor
0.0
916
Normal
0.0
563
Tumor
0.0
228
Normal
0.0
171
Tumor
0.0
466
Normal
0.0
882
Normal
0.0
517
Tumor
0.0
965
Tumor
0.0
1026
Normal
0.0
413
Tumor
0.0
1045
Tumor
0.0
462
Normal
0.0
271
Tumor
0.0
388
Normal
0.0
212
Normal
0.0
436
Normal
0.0
816
Normal
0.0
686
Normal
0.0
474
Normal
0.0
852
Normal
0.0
425
Tumor
0.0
728
Normal
0.0
873
Tumor
0.0
727
Tumor
0.0
824
Normal
0.0
136
Normal
0.0
478
Normal
0.0
755
Tumor
0.0
861
Tumor
0.0
865
Tumor
0.0
422
Normal
0.0
528
Normal
0.0
364
Normal
0.0
648
Normal
0.0
536
Normal
0.0
192
Normal
0.0
568
Normal
0.0
966
Normal
0.0
818
Normal
0.0
443
Tumor
0.0
394
Normal
0.0
745
Tumor
0.0
918
Normal
0.0
874
Normal
0.0
983
Tumor
0.0
461
Tumor
0.0
387
Tumor
0.0
362
Normal
0.0
815
Tumor
0.0
355
Tumor
0.0
327
Tumor
0.0
392
Normal
0.0
277
Tumor
0.0
344
Normal
0.0
1025
Tumor
0.0
472
Normal
0.0
742
Normal
0.0
615
Tumor
0.0
526
Normal
0.0
921
Tumor
0.0
314
Normal
0.0
426
Normal
0.0
617
Tumor
0.0
917
Tumor
0.0
162
Normal
0.0
185
Tumor
0.0
214
Normal
-0.1
368
Normal
-0.1
672
Normal
-0.1
858
Normal
-0.1
663
Tumor
-0.1
138
Normal
-0.1
384
Normal
-0.1
432
Normal
-0.1
491
Tumor
-0.1
148
Normal
-0.1
267
Tumor
-0.1
482
Normal
-0.1
1046
Normal
-0.1
533
Tumor
-0.1
172
Normal
-0.1
224
Normal
-0.1
664
Normal
-0.1
213
Tumor
-0.1
111
Normal
-0.1
416
Normal
-0.1
1044
Normal
-0.1
1016
Normal
-0.1
571
Tumor
-0.1
414
Normal
-0.1
524
Normal
-0.1
354
Normal
-0.1
975
Tumor
-0.1
572
Normal
-0.1
628
Normal
-0.1
627
Tumor
-0.1
618
Normal
-0.1
446
Normal
-0.1
493
Tumor
-0.1
424
Normal
-0.1
1042
Normal
-0.1
114
Normal
-0.1
535
Tumor
-0.1
313
Tumor
-0.1
286
Normal
-0.1
284
Normal
-0.1
222
Normal
-0.1
695
Tumor
-0.1
636
Normal
-0.1
452
Normal
-0.1
196
Normal
-0.1
328
Normal
-0.1
366
Normal
-0.1
356
Normal
-0.1
813
Tumor
-0.1
923
Tumor
-0.1
716
Normal
-0.1
195
Tumor
-0.1
914
Normal
-0.1
737
Tumor
-0.1
428
Normal
-0.1
221
Tumor
-0.1
913
Tumor
-0.1
131
Tumor
-0.1
386
Normal
-0.1
433
Tumor
-0.1
497
Tumor
-0.1
352
Normal
-0.1
564
Normal
-0.1
146
Normal
-0.1
514
Normal
-0.1
456
Normal
-0.1
823
Tumor
-0.1
126
Normal
-0.1
297
Tumor
-0.1
278
Normal
-0.1
375
Tumor
-0.1
666
Normal
-0.1
868
Normal
-0.1
661
Tumor
-0.1
665
Tumor
-0.1
662
Normal
-0.1
926
Normal
-0.1
186
Normal
-0.1
743
Tumor
-0.2
332
Normal
-0.2
523
Tumor
-0.2
341
Tumor
-0.2
232
Normal
-0.2
312
Normal
-0.2
191
Tumor
-0.2
358
Normal
-0.2
464
Normal
-0.2
113
Tumor
-0.2
943
Tumor
-0.2
451
Tumor
-0.2
444
Normal
-0.2
912
Normal
-0.2
268
Normal
-0.2
473
Tumor
-0.2
525
Tumor
-0.2
187
Tumor
-0.2
642
Normal
-0.2
396
Normal
-0.2
363
Tumor
-0.2
361
Tumor
-0.2
283
Tumor
-0.2
262
Normal
-0.2
545
Tumor
-0.2
574
Normal
-0.2
127
Tumor
-0.2
468
Normal
-0.2
112
Tumor
-0.2
434
Normal
-0.2
272
Normal
-0.2
447
Tumor
-0.2
311
Tumor
-0.2
558
Normal
-0.2
385
Tumor
-0.2
814
Normal
-0.2
953
Tumor
-0.2
671
Tumor
-0.2
188
Normal
-0.3
218
Normal
-0.3
884
Normal
-0.3
721
Tumor
-0.3
258
Normal
-0.3
1043
Tumor
-0.3
383
Tumor
-0.3
391
Tumor
-0.3
421
Tumor
-0.3
217
Tumor
-0.3
427
Tumor
-0.3
285
Tumor
-0.3
257
Tumor
-0.3
978
Normal
-0.3
393
Tumor
-0.3
777
Tumor
-0.3
145
Tumor
-0.3
863
Tumor
-0.4
161
Tumor
-0.4
367
Tumor
-0.4
877
Tumor
-0.4
467
Tumor
-0.4
567
Tumor
-0.5
647
Tumor
-0.5
141
Tumor
-0.5
463
Tumor
-0.5
1015
Tumor
-0.5
573
Tumor
-0.5
357
Tumor
-0.5
982
Normal
-0.5
125
Tumor
-0.5
937
Tumor
-0.6
981
Tumor
-0.6
211
Tumor
-0.6
925
Tumor
-0.6
723
Tumor
-0.6
487
Tumor
-0.7
343
Tumor
-0.7
724
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
