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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCAF1 is not prognostic in Kidney Chromophobe (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
32.5
Number of samples
64
Samples
Sample
Description
TPM
TCGA-KL-8338-01A
0 years, male, white, stage:Stage III, alive, 2633 days
66.5
TCGA-KN-8432-01A
0 years, female, white, stage:Stage II, alive, 76 days
66.4
TCGA-KN-8429-01A
0 years, female, white, stage:Stage III, alive, 2650 days
60.5
TCGA-KL-8331-01A
0 years, female, white, stage:Stage II, alive, 3010 days
60.3
TCGA-KL-8329-01A
0 years, female, asian, stage:Stage I, alive, 2752 days
57.6
TCGA-KN-8434-01A
0 years, female, white, stage:Stage II, alive, 1797 days
54.0
TCGA-KL-8336-01A
0 years, female, white, stage:Stage IV, dead, 920 days
53.9
TCGA-KN-8424-01A
0 years, female, white, stage:Stage I, alive, 1983 days
53.1
TCGA-KN-8423-01A
0 years, male, white, stage:Stage I, alive, 788 days
52.5
TCGA-KN-8436-01A
0 years, male, white, stage:Stage II, alive, 1288 days
51.8
TCGA-KL-8323-01A
0 years, female, white, stage:Stage III, dead, 1158 days
46.5
TCGA-KO-8411-01A
0 years, male, white, stage:Stage I, alive, 3958 days
44.0
TCGA-KL-8330-01A
0 years, female, black or african american, stage:Stage II, alive, 3304 days
43.1
TCGA-KN-8426-01A
0 years, male, white, stage:Stage IV, alive, 108 days
41.8
TCGA-KM-8442-01A
0 years, male, stage:Stage II, alive, 1437 days
41.2
TCGA-KN-8435-01A
0 years, male, white, stage:Stage II, alive, 3498 days
41.0
TCGA-KO-8404-01A
0 years, male, white, stage:Stage IV, dead, 325 days
40.7
TCGA-KL-8343-01A
0 years, male, white, stage:Stage III, dead, 2172 days
39.6
TCGA-KL-8324-01A
0 years, female, white, stage:Stage II, alive, 4676 days
37.8
TCGA-KL-8333-01A
0 years, male, white, stage:Stage II, alive, 2991 days
37.7
TCGA-KM-8639-01A
0 years, male, white, stage:Stage I, alive, 953 days
37.1
TCGA-KL-8325-01A
0 years, female, white, stage:Stage II, dead, 725 days
35.0
TCGA-KO-8417-01A
0 years, female, white, stage:Stage I, alive, 2815 days
34.2
TCGA-KN-8428-01A
0 years, male, white, stage:Stage II, dead, 1590 days
34.2
TCGA-KL-8337-01A
0 years, male, black or african american, stage:Stage II, alive, 1364 days
34.0
TCGA-KO-8414-01A
0 years, female, white, stage:Stage II, alive, 3212 days
32.7
TCGA-KL-8344-01A
0 years, male, white, stage:Stage III, alive, 876 days
31.9
TCGA-KN-8418-01A
0 years, female, white, stage:Stage II, alive, 3935 days
31.9
TCGA-KO-8406-01A
0 years, female, white, stage:Stage I, alive, 3145 days
31.5
TCGA-KL-8345-01A
0 years, male, white, stage:Stage III, alive, 1665 days
31.2
TCGA-KL-8334-01A
0 years, female, white, stage:Stage III, alive, 2949 days
30.4
TCGA-KL-8328-01A
0 years, male, white, stage:Stage II, alive, 3127 days
30.1
TCGA-KM-8440-01A
0 years, male, black or african american, stage:Stage III, alive, 1366 days
30.1
TCGA-KL-8339-01A
0 years, male, white, stage:Stage IV, dead, 855 days
29.6
TCGA-KM-8443-01A
0 years, male, white, stage:Stage II, alive, 1520 days
29.0
TCGA-KL-8346-01A
0 years, male, white, stage:Stage II, alive, 1897 days
28.9
TCGA-KO-8407-01A
0 years, male, white, stage:Stage II, alive, 2820 days
28.7
TCGA-KL-8332-01A
0 years, male, white, stage:Stage I, alive, 2582 days
27.2
TCGA-KL-8326-01A
0 years, male, white, stage:Stage III, alive, 3322 days
26.9
TCGA-KN-8427-01A
0 years, male, white, stage:Stage IV, alive, 30 days
26.8
TCGA-KL-8340-01A
0 years, male, white, stage:Stage II, alive, 2024 days
25.6
TCGA-KN-8433-01A
0 years, female, white, stage:Stage III, alive, 341 days
25.2
TCGA-KN-8425-01A
0 years, male, white, stage:Stage I, alive, 3179 days
23.2
TCGA-KL-8342-01A
0 years, female, white, stage:Stage II, alive, 2248 days
23.1
TCGA-KN-8421-01A
0 years, female, white, stage:Stage II, alive, 2674 days
22.9
TCGA-KM-8438-01A
0 years, female, white, stage:Stage II, alive, 4622 days
22.8
TCGA-KO-8408-01A
0 years, male, white, stage:Stage III, dead, 507 days
22.1
TCGA-KL-8327-01A
0 years, female, white, stage:Stage I, alive, 4169 days
21.6
TCGA-KN-8431-01A
0 years, female, stage:Stage II, alive, 588 days
21.3
TCGA-KO-8413-01A
0 years, male, white, stage:Stage I, alive, 3038 days
21.1
TCGA-KO-8410-01A
0 years, female, white, stage:Stage I, alive, 3136 days
20.9
TCGA-KO-8416-01A
0 years, male, white, stage:Stage III, alive, 2752 days
20.9
TCGA-KL-8335-01A
0 years, male, white, stage:Stage III, alive, 2815 days
20.2
TCGA-KM-8476-01A
0 years, male, white, stage:Stage I, alive, 3745 days
18.5
TCGA-KO-8409-01A
0 years, male, white, stage:Stage II, alive, 3180 days
18.5
TCGA-KN-8419-01A
0 years, male, black or african american, stage:Stage II, alive, 714 days
18.2
TCGA-KO-8415-01A
0 years, female, white, stage:Stage I, alive, 2939 days
17.7
TCGA-KO-8405-01A
0 years, male, white, stage:Stage III, alive, 3056 days
17.6
TCGA-KL-8341-01A
0 years, male, asian, stage:Stage IV, dead, 754 days
17.1
TCGA-KM-8439-01A
0 years, male, white, stage:Stage I, alive, 708 days
16.4
TCGA-KO-8403-01A
0 years, male, white, stage:Stage I, alive, 3208 days
16.0
TCGA-KN-8437-01A
0 years, female, white, stage:Stage I, alive, 3068 days
15.5
TCGA-KM-8441-01A
0 years, female, white, stage:Stage I, alive, 876 days
15.1
TCGA-KM-8477-01A
0 years, male, white, stage:Stage I, alive, 1553 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCAF1 is potential prognostic, high expression is favorable in Kidney Renal Clear Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.4
Number of samples
521
Samples
Sample
Description
TPM
TCGA-B2-5636-01A
0 years, male, white, stage:Stage I, alive, 919 days
47.5
TCGA-CJ-5681-01A
0 years, female, white, stage:Stage IV, dead, 552 days
43.6
TCGA-GK-A6C7-01A
0 years, female, black or african american, stage:Stage I, alive, 61 days
41.9
TCGA-T7-A92I-01A
0 years, female, black or african american, stage:Stage I, alive, 356 days
41.2
TCGA-A3-A8CQ-01A
0 years, female, black or african american, stage:Stage I, alive, 3 days
41.2
TCGA-G6-A8L8-01A
0 years, female, black or african american, stage:Stage I, dead, 1091 days
40.6
TCGA-B8-A54K-01A
0 years, male, black or african american, stage:Stage I, alive, 469 days
38.8
TCGA-A3-A6NN-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
37.9
TCGA-B0-4696-01A
0 years, male, white, stage:Stage III, dead, 866 days
37.8
TCGA-B0-5691-01A
0 years, female, white, stage:Stage I, alive, 3431 days
37.4
TCGA-CW-5583-01A
0 years, female, white, stage:Stage I, alive, 2489 days
36.6
TCGA-CW-5585-01A
0 years, male, white, stage:Stage IV, alive, 2609 days
36.4
TCGA-DV-5567-01A
0 years, female, black or african american, stage:Stage I, alive, 2004 days
34.4
TCGA-AS-3778-01A
0 years, male, white, stage:Stage I, alive, 43 days
34.1
TCGA-B0-4710-01A
0 years, female, white, stage:Stage III, alive, 1755 days
34.0
TCGA-B0-5709-01A
0 years, female, white, stage:Stage III, alive, 3974 days
33.8
TCGA-DV-5576-01A
0 years, female, black or african american, stage:Stage I, dead, 727 days
33.6
TCGA-B0-4688-01A
0 years, male, white, stage:Stage IV, dead, 101 days
33.1
TCGA-B0-5699-01A
0 years, male, white, stage:Stage I, alive, 3841 days
33.1
TCGA-CJ-5680-01A
0 years, female, white, stage:Stage IV, dead, 768 days
33.0
TCGA-B8-5164-01A
0 years, male, white, stage:Stage III, alive, 26 days
32.8
TCGA-B8-A54H-01A
0 years, female, black or african american, stage:Stage II, alive, 256 days
32.8
TCGA-B4-5378-01A
0 years, male, white, stage:Stage I, alive, 175 days
32.6
TCGA-A3-A6NL-01A
0 years, female, black or african american, stage:Stage I, alive, 689 days
32.6
TCGA-B4-5377-01A
0 years, female, white, stage:Stage IV, alive, 365 days
32.6
TCGA-A3-3320-01A
0 years, female, white, stage:Stage I, alive, 1508 days
32.6
TCGA-B0-5693-01A
0 years, female, white, stage:Stage I, alive, 4074 days
32.4
TCGA-CW-5591-01A
0 years, male, white, stage:Stage IV, alive, 2271 days
32.3
TCGA-B8-5159-01A
0 years, female, white, stage:Stage I, alive, 722 days
31.9
TCGA-B0-5690-01A
0 years, female, white, stage:Stage I, alive, 3392 days
31.9
TCGA-B0-5692-01A
0 years, female, white, stage:Stage III, alive, 3944 days
31.8
TCGA-CZ-5982-01A
0 years, female, white, stage:Stage I, alive, 2439 days
31.5
TCGA-B8-A54J-01A
0 years, male, black or african american, stage:Stage II, alive, 528 days
31.5
TCGA-A3-A8OW-01A
0 years, male, black or african american, stage:Stage III, alive, 323 days
30.9
TCGA-CJ-4876-01A
0 years, male, white, stage:Stage II, alive, 1955 days
30.9
TCGA-CW-5584-01A
0 years, male, white, stage:Stage III, dead, 164 days
30.8
TCGA-B8-5553-01A
0 years, female, white, stage:Stage I, alive, 435 days
30.7
TCGA-A3-3349-01A
0 years, female, white, stage:Stage I, alive, 1385 days
30.6
TCGA-B8-5551-01A
0 years, female, black or african american, stage:Stage I, alive, 16 days
30.6
TCGA-CW-6097-01A
0 years, male, white, stage:Stage III, dead, 571 days
30.6
TCGA-B0-5695-01A
0 years, female, white, stage:Stage I, alive, 2150 days
30.3
TCGA-BP-4331-01A
0 years, male, white, stage:Stage I, dead, 2454 days
30.3
TCGA-CJ-4905-01A
0 years, female, white, stage:Stage I, alive, 1496 days
30.3
TCGA-B0-4698-01A
0 years, male, white, stage:Stage IV, dead, 42 days
30.3
TCGA-BP-4352-01A
0 years, female, white, stage:Stage IV, dead, 344 days
30.2
TCGA-A3-3351-01A
0 years, male, white, stage:Stage II, alive, 910 days
30.2
TCGA-CJ-4634-01A
0 years, female, white, stage:Stage I, alive, 3498 days
30.0
TCGA-A3-A6NI-01A
0 years, male, black or african american, stage:Stage I, alive, 1018 days
29.9
TCGA-BP-5181-01A
0 years, female, white, stage:Stage I, alive, 1495 days
29.7
TCGA-BP-4970-01A
0 years, male, asian, stage:Stage III, alive, 433 days
29.7
TCGA-B8-A8YJ-01A
0 years, female, black or african american, stage:Stage I, alive, 431 days
29.7
TCGA-CW-6088-01A
0 years, male, white, stage:Stage I, alive, 3222 days
29.6
TCGA-B0-4699-01A
0 years, male, white, stage:Stage IV, dead, 110 days
29.5
TCGA-A3-A6NJ-01A
0 years, female, black or african american, stage:Stage I, alive, 468 days
29.4
TCGA-A3-3372-01A
0 years, male, white, stage:Stage III, alive, 735 days
29.0
TCGA-BP-4965-01A
0 years, male, white, stage:Stage I, alive, 1871 days
29.0
TCGA-BP-4342-01A
0 years, male, white, stage:Stage II, dead, 2256 days
28.9
TCGA-CW-5587-01A
0 years, female, white, stage:Stage III, alive, 2226 days
28.9
TCGA-CJ-4869-01A
0 years, male, white, stage:Stage III, alive, 2554 days
28.9
TCGA-BP-4177-01A
0 years, male, white, stage:Stage I, alive, 1670 days
28.7
TCGA-BP-4983-01A
0 years, female, asian, stage:Stage III, alive, 1413 days
28.4
TCGA-B2-5641-01A
0 years, male, white, stage:Stage I, alive, 656 days
28.2
TCGA-EU-5904-01A
0 years, female, white, stage:Stage I, alive, 551 days
28.2
TCGA-BP-4976-01A
0 years, male, white, stage:Stage I, alive, 1632 days
28.1
TCGA-BP-4967-01A
0 years, male, white, stage:Stage III, alive, 205 days
28.1
TCGA-DV-5575-01A
0 years, female, white, stage:Stage I, alive, 1729 days
28.0
TCGA-B0-5119-01A
0 years, female, white, stage:Stage I, alive, 1552 days
27.8
TCGA-CW-5589-01A
0 years, male, white, stage:Stage I, alive, 2378 days
27.8
TCGA-B2-A4SR-01A
0 years, male, black or african american, stage:Stage II, alive, 507 days
27.8
TCGA-CJ-4899-01A
0 years, male, asian, stage:Stage I, alive, 1528 days
27.6
TCGA-B0-4821-01A
0 years, female, asian, stage:Stage III, dead, 1230 days
27.5
TCGA-A3-3359-01A
0 years, female, white, stage:Stage I, alive, 2504 days
27.4
TCGA-BP-5186-01A
0 years, female, white, stage:Stage I, alive, 693 days
27.3
TCGA-B4-5844-01A
0 years, female, white, stage:Stage II, alive, 7 days
27.3
TCGA-B8-A7U6-01A
0 years, female, black or african american, stage:Stage I, alive, 495 days
27.2
TCGA-CJ-4894-01A
0 years, male, white, stage:Stage III, dead, 841 days
27.1
TCGA-B4-5834-01A
0 years, male, white, stage:Stage I, alive, 38 days
27.1
TCGA-B0-5098-01A
0 years, female, black or african american, stage:Stage I, dead, 1584 days
27.1
TCGA-A3-A8OV-01A
0 years, male, black or african american, stage:Stage I, alive, 340 days
27.1
TCGA-B8-A54F-01A
0 years, female, black or african american, stage:Stage I, alive, 519 days
27.0
TCGA-B0-5100-01A
0 years, male, black or african american, stage:Stage III, dead, 1913 days
26.8
TCGA-CJ-4908-01A
0 years, male, white, stage:Stage I, alive, 1531 days
26.7
TCGA-B0-5701-01A
0 years, male, white, stage:Stage III, alive, 2461 days
26.6
TCGA-CW-5581-01A
0 years, male, white, stage:Stage I, alive, 2799 days
26.5
TCGA-AK-3461-01A
0 years, male, white, stage:Stage I, alive, 2217 days
26.5
TCGA-BP-4795-01A
0 years, female, white, stage:Stage I, alive, 620 days
26.5
TCGA-BP-4760-01A
0 years, male, black or african american, stage:Stage I, alive, 2361 days
26.5
TCGA-CW-6087-01A
0 years, male, white, stage:Stage IV, dead, 41 days
26.5
TCGA-A3-3326-01A
0 years, male, white, stage:Stage I, alive, 1137 days
26.4
TCGA-A3-3317-01A
0 years, male, stage:Stage II, alive, 1491 days
26.3
TCGA-CW-6093-01A
0 years, male, white, stage:Stage I, alive, 3146 days
26.3
TCGA-BP-4768-01A
0 years, female, white, stage:Stage I, alive, 400 days
26.3
TCGA-3Z-A93Z-01A
0 years, male, black or african american, stage:Stage I, alive, 385 days
26.2
TCGA-B0-5107-01A
0 years, female, white, stage:Stage IV, dead, 927 days
26.2
TCGA-B0-5705-01A
0 years, female, white, stage:Stage I, alive, 4537 days
26.2
TCGA-CZ-5451-01A
0 years, male, white, stage:Stage II, alive, 1929 days
26.1
TCGA-A3-3376-01A
0 years, male, black or african american, stage:Stage I, dead, 1696 days
26.0
TCGA-BP-4994-01A
0 years, male, white, stage:Stage I, alive, 1308 days
26.0
TCGA-BP-4340-01A
0 years, female, white, stage:Stage I, dead, 562 days
25.9
TCGA-AK-3450-01A
0 years, female, white, stage:Stage I, alive, 1508 days
25.9
TCGA-CZ-4859-01A
0 years, female, white, stage:Stage I, alive, 1787 days
25.9
TCGA-B8-5545-01A
0 years, male, black or african american, stage:Stage I, alive, 1525 days
25.8
TCGA-BP-4766-01A
0 years, female, white, stage:Stage I, alive, 1462 days
25.8
TCGA-DV-5565-01A
0 years, male, white, stage:Stage I, alive, 1329 days
25.7
TCGA-BP-5200-01A
0 years, male, white, stage:Stage II, alive, 1063 days
25.7
TCGA-BP-5196-01A
0 years, male, white, stage:Stage I, alive, 1018 days
25.7
TCGA-B8-4148-01A
0 years, female, white, stage:Stage I, alive, 1520 days
25.7
TCGA-CJ-4907-01A
0 years, male, white, stage:Stage III, alive, 1499 days
25.7
TCGA-BP-4993-01A
0 years, male, white, stage:Stage I, alive, 177 days
25.6
TCGA-EU-5907-01A
0 years, male, white, stage:Stage III, alive, 127 days
25.5
TCGA-A3-3370-01A
0 years, female, white, stage:Stage I, alive, 2274 days
25.5
TCGA-BP-5199-01A
0 years, male, white, stage:Stage II, alive, 1355 days
25.5
TCGA-BP-4341-01A
0 years, male, white, stage:Stage III, dead, 1589 days
25.4
TCGA-BP-4987-01A
0 years, female, asian, stage:Stage I, alive, 1124 days
25.4
TCGA-BP-4761-01A
0 years, male, white, stage:Stage III, alive, 182 days
25.3
TCGA-BP-5192-01A
0 years, male, white, stage:Stage I, alive, 714 days
25.3
TCGA-BP-4986-01A
0 years, male, white, stage:Stage I, alive, 785 days
25.3
TCGA-B0-5094-01A
0 years, male, white, stage:Stage IV, dead, 333 days
25.3
TCGA-B8-5546-01A
0 years, female, black or african american, stage:Stage I, alive, 505 days
25.2
TCGA-BP-4775-01A
0 years, female, white, stage:Stage I, alive, 1843 days
25.2
TCGA-CZ-4862-01A
0 years, male, white, stage:Stage I, alive, 3271 days
25.1
TCGA-DV-5566-01A
0 years, female, white, stage:Stage I, alive, 1398 days
25.0
TCGA-A3-3328-01A
0 years, male, white, stage:Stage I, alive, 1385 days
25.0
TCGA-A3-3347-01A
0 years, female, white, stage:Stage III, dead, 1610 days
25.0
TCGA-BP-4769-01A
0 years, male, white, stage:Stage I, alive, 1876 days
25.0
TCGA-CJ-6032-01A
0 years, female, white, stage:Stage II, alive, 3639 days
25.0
TCGA-BP-5004-01A
0 years, male, white, stage:Stage I, alive, 1126 days
24.9
TCGA-CJ-4635-01A
0 years, male, white, stage:Stage I, alive, 1416 days
24.9
TCGA-B8-5549-01A
0 years, male, white, stage:Stage I, alive, 194 days
24.8
TCGA-B8-5158-01A
0 years, male, white, stage:Stage III, alive, 1218 days
24.8
TCGA-BP-4774-01A
0 years, female, white, stage:Stage I, alive, 1885 days
24.8
TCGA-CJ-5675-01A
0 years, male, white, stage:Stage II, alive, 3936 days
24.8
TCGA-B8-5165-01A
0 years, male, white, stage:Stage I, alive, 737 days
24.7
TCGA-B0-5102-01A
0 years, female, white, stage:Stage I, dead, 2764 days
24.6
TCGA-EU-5906-01A
0 years, male, white, stage:Stage I, alive, 206 days
24.6
TCGA-CJ-4643-01A
0 years, female, white, stage:Stage II, alive, 1793 days
24.5
TCGA-B0-4818-01A
0 years, female, white, stage:Stage II, dead, 510 days
24.5
TCGA-B2-4102-01A
0 years, male, white, stage:Stage I, alive, 952 days
24.4
TCGA-B0-5110-01A
0 years, female, white, stage:Stage I, alive, 2009 days
24.3
TCGA-AK-3440-01A
0 years, male, white, stage:Stage I, alive, 2865 days
24.3
TCGA-A3-3387-01A
0 years, male, white, stage:Stage I, alive, 617 days
24.2
TCGA-A3-3346-01A
0 years, male, white, stage:Stage I, dead, 137 days
24.2
TCGA-B0-4849-01A
0 years, male, white, stage:Stage III, dead, 69 days
24.1
TCGA-CJ-4878-01A
0 years, female, white, stage:Stage III, alive, 2186 days
24.0
TCGA-B0-5095-01A
0 years, male, white, stage:Stage III, dead, 245 days
24.0
TCGA-BP-4173-01A
0 years, male, white, stage:Stage II, alive, 1893 days
24.0
TCGA-BP-4961-01A
0 years, male, white, stage:Stage I, alive, 1935 days
23.9
TCGA-B0-5700-01A
0 years, male, white, stage:Stage I, alive, 1790 days
23.9
TCGA-CJ-4920-01A
0 years, female, white, stage:Stage I, dead, 139 days
23.8
TCGA-A3-3382-01A
0 years, male, white, stage:Stage I, alive, 574 days
23.8
TCGA-CJ-4892-01A
0 years, female, white, stage:Stage I, alive, 1521 days
23.7
TCGA-B0-5092-01A
0 years, female, white, stage:Stage IV, dead, 459 days
23.7
TCGA-A3-3373-01A
0 years, female, white, stage:Stage I, alive, 1621 days
23.7
TCGA-B0-5703-01A
0 years, male, white, stage:Stage I, alive, 2246 days
23.7
TCGA-CZ-5985-01A
0 years, male, white, stage:Stage II, alive, 1997 days
23.7
TCGA-BP-4982-01A
0 years, male, white, stage:Stage I, alive, 1014 days
23.6
TCGA-B0-4703-01A
0 years, male, white, stage:Stage IV, dead, 182 days
23.6
TCGA-B0-4827-01A
0 years, female, white, stage:Stage III, dead, 885 days
23.6
TCGA-BP-5201-01A
0 years, male, white, stage:Stage IV, alive, 951 days
23.6
TCGA-BP-4991-01A
0 years, male, white, stage:Stage I, alive, 1413 days
23.5
TCGA-B0-4836-01A
0 years, male, white, stage:Stage IV, dead, 1238 days
23.5
TCGA-BP-4977-01A
0 years, male, white, stage:Stage I, alive, 454 days
23.4
TCGA-BP-5007-01A
0 years, male, white, stage:Stage II, alive, 1140 days
23.4
TCGA-BP-4330-01A
0 years, female, black or african american, stage:Stage III, alive, 1888 days
23.3
TCGA-CZ-5452-01A
0 years, male, white, stage:Stage II, alive, 1789 days
23.3
TCGA-B0-4945-01A
0 years, female, white, stage:Stage I, dead, 2145 days
23.3
TCGA-B0-4848-01A
0 years, male, white, stage:Stage III, dead, 883 days
23.3
TCGA-BP-4998-01A
0 years, male, asian, stage:Stage I, alive, 932 days
23.2
TCGA-B2-5639-01A
0 years, male, white, stage:Stage IV, dead, 1003 days
23.2
TCGA-BP-4973-01A
0 years, male, white, stage:Stage III, alive, 1384 days
23.2
TCGA-B0-4845-01A
0 years, male, white, stage:Stage IV, dead, 1986 days
23.2
TCGA-BP-5183-01A
0 years, male, white, stage:Stage III, alive, 1291 days
23.2
TCGA-B0-4707-01A
0 years, male, white, stage:Stage III, dead, 600 days
23.1
TCGA-CZ-5988-01A
0 years, male, white, stage:Stage I, alive, 693 days
23.1
TCGA-BP-4327-01A
0 years, female, white, stage:Stage II, dead, 109 days
23.1
TCGA-CW-5590-01A
0 years, male, white, stage:Stage IV, dead, 1075 days
23.1
TCGA-A3-3343-01A
0 years, male, white, stage:Stage II, alive, 945 days
23.0
TCGA-CZ-5458-01A
0 years, male, white, stage:Stage III, alive, 2789 days
23.0
TCGA-B0-5099-01A
0 years, female, white, stage:Stage III, dead, 485 days
22.9
TCGA-B4-5836-01A
0 years, female, white, stage:Stage I, alive, 141 days
22.7
TCGA-CJ-4868-01A
0 years, male, white, stage:Stage IV, dead, 646 days
22.7
TCGA-CJ-5671-01A
0 years, male, white, stage:Stage I, alive, 3987 days
22.7
TCGA-CZ-4864-01A
0 years, male, white, stage:Stage II, dead, 1315 days
22.7
TCGA-B8-5550-01A
0 years, male, white, stage:Stage III, alive, 1476 days
22.7
TCGA-B0-5707-01A
0 years, female, white, stage:Stage I, alive, 3744 days
22.7
TCGA-CJ-4886-01A
0 years, female, white, stage:Stage I, alive, 1952 days
22.7
TCGA-BP-5198-01A
0 years, male, white, stage:Stage III, alive, 603 days
22.6
TCGA-EU-5905-01A
0 years, female, white, stage:Stage I, alive, 119 days
22.6
TCGA-CJ-4904-01A
0 years, female, white, stage:Stage IV, alive, 3302 days
22.5
TCGA-B0-4701-01A
0 years, female, white, stage:Stage IV, dead, 238 days
22.4
TCGA-MM-A563-01A
0 years, male, black or african american, stage:'--, alive, 591 days
22.3
TCGA-B0-4718-01A
0 years, male, white, stage:Stage III, alive, 1778 days
22.3
TCGA-BP-4165-01A
0 years, female, white, stage:Stage I, alive, 3037 days
22.3
TCGA-BP-4354-01A
0 years, male, white, stage:Stage IV, dead, 1034 days
22.3
TCGA-BP-4771-01A
0 years, male, white, stage:Stage IV, dead, 162 days
22.3
TCGA-BP-4351-01A
0 years, female, white, stage:Stage III, alive, 970 days
22.3
TCGA-BP-4790-01A
0 years, male, white, stage:Stage I, dead, 1111 days
22.2
TCGA-BP-4169-01A
0 years, female, white, stage:Stage II, dead, 701 days
22.2
TCGA-CZ-4858-01A
0 years, male, white, stage:Stage II, dead, 2105 days
22.1
TCGA-B0-4706-01A
0 years, male, white, stage:Stage III, dead, 65 days
22.1
TCGA-A3-3308-01A
0 years, female, white, stage:Stage III, alive, 16 days
22.1
TCGA-B8-5163-01A
0 years, female, white, stage:Stage III, alive, 822 days
22.0
TCGA-CJ-4639-01A
0 years, female, white, stage:Stage II, alive, 3229 days
21.9
TCGA-B0-4824-01A
0 years, female, white, stage:Stage I, dead, 1657 days
21.9
TCGA-B0-4814-01A
0 years, male, white, stage:Stage IV, dead, 168 days
21.9
TCGA-BP-4963-01A
0 years, male, white, stage:Stage I, alive, 1834 days
21.9
TCGA-BP-5182-01A
0 years, male, white, stage:Stage I, alive, 1165 days
21.9
TCGA-6D-AA2E-01A
0 years, female, black or african american, stage:Stage I, alive, 362 days
21.7
TCGA-CZ-5453-01A
0 years, male, white, stage:Stage II, dead, 2419 days
21.7
TCGA-BP-5174-01A
0 years, female, white, stage:Stage I, alive, 2257 days
21.7
TCGA-B0-5713-01A
0 years, female, white, stage:Stage III, alive, 2782 days
21.6
TCGA-BP-4349-01A
0 years, female, white, stage:Stage I, alive, 372 days
21.6
TCGA-BP-4995-01A
0 years, male, white, stage:Stage I, alive, 1371 days
21.6
TCGA-A3-3322-01A
0 years, male, white, stage:Stage I, alive, 1478 days
21.6
TCGA-CJ-5682-01A
0 years, male, white, stage:Stage IV, alive, 3736 days
21.6
TCGA-CJ-5672-01A
0 years, male, white, stage:Stage I, dead, 1972 days
21.6
TCGA-B2-4101-01A
0 years, male, white, stage:Stage II, alive, 648 days
21.5
TCGA-A3-3362-01A
0 years, female, white, stage:Stage I, alive, 1559 days
21.5
TCGA-CJ-4893-01A
0 years, female, white, stage:Stage I, alive, 750 days
21.5
TCGA-MM-A84U-01A
0 years, female, black or african american, stage:Stage I, alive, 700 days
21.4
TCGA-CZ-4854-01A
0 years, male, white, stage:Stage I, dead, 1404 days
21.4
TCGA-A3-3331-01A
0 years, female, white, stage:Stage I, alive, 1257 days
21.3
TCGA-B8-4143-01A
0 years, female, white, stage:Stage IV, dead, 709 days
21.2
TCGA-B0-4810-01A
0 years, male, white, stage:Stage III, dead, 478 days
21.2
TCGA-CJ-4895-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
21.2
TCGA-BP-5189-01A
0 years, male, white, stage:Stage I, dead, 822 days
21.2
TCGA-BP-4974-01A
0 years, male, white, stage:Stage IV, dead, 211 days
21.2
TCGA-CZ-5469-01A
0 years, male, white, stage:Stage II, dead, 946 days
21.1
TCGA-A3-3323-01A
0 years, male, white, stage:Stage I, alive, 1106 days
21.1
TCGA-B0-4838-01A
0 years, female, white, stage:Stage I, dead, 834 days
21.0
TCGA-CZ-5461-01A
0 years, male, white, stage:Stage IV, dead, 330 days
21.0
TCGA-B0-4846-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
20.9
TCGA-B0-4816-01A
0 years, male, white, stage:Stage II, dead, 1371 days
20.8
TCGA-BP-4781-01A
0 years, male, white, stage:Stage I, alive, 2080 days
20.8
TCGA-B2-3923-01A
0 years, male, white, stage:Stage II, alive, 992 days
20.8
TCGA-CZ-4863-01A
0 years, female, white, stage:Stage III, alive, 1928 days
20.8
TCGA-B8-A54G-01A
0 years, male, black or african american, stage:Stage I, alive, 53 days
20.7
TCGA-AK-3445-01A
0 years, male, white, stage:Stage III, alive, 2392 days
20.7
TCGA-BP-4801-01A
0 years, male, white, stage:Stage I, alive, 1124 days
20.6
TCGA-CJ-5683-01A
0 years, male, white, stage:Stage I, alive, 1889 days
20.6
TCGA-AK-3443-01A
0 years, male, white, stage:Stage II, alive, 1423 days
20.6
TCGA-B0-5812-01A
0 years, male, white, stage:Stage I, alive, 3834 days
20.5
TCGA-CJ-5677-01A
0 years, female, white, stage:Stage IV, dead, 782 days
20.5
TCGA-BP-4346-01A
0 years, male, white, stage:Stage III, dead, 1493 days
20.4
TCGA-BP-4985-01A
0 years, male, white, stage:Stage III, dead, 952 days
20.3
TCGA-B0-5697-01A
0 years, male, white, stage:Stage I, alive, 2630 days
20.3
TCGA-CW-5580-01A
0 years, female, white, stage:Stage IV, dead, 1964 days
20.3
TCGA-BP-4770-01A
0 years, female, white, stage:Stage IV, dead, 329 days
20.3
TCGA-B0-5113-01A
0 years, female, white, stage:Stage III, alive, 1175 days
20.2
TCGA-B0-5106-01A
0 years, male, white, stage:Stage I, dead, 1598 days
20.2
TCGA-CJ-4640-01A
0 years, male, white, stage:Stage III, alive, 3480 days
20.2
TCGA-AK-3454-01A
0 years, male, white, stage:Stage I, alive, 874 days
20.2
TCGA-A3-3325-01A
0 years, male, white, stage:Stage I, dead, 1170 days
20.1
TCGA-BP-5008-01A
0 years, male, white, stage:Stage I, alive, 1071 days
20.1
TCGA-BP-4789-01A
0 years, male, white, stage:Stage I, alive, 1489 days
20.1
TCGA-A3-3352-01A
0 years, male, white, stage:Stage III, dead, 561 days
20.1
TCGA-DV-5569-01A
0 years, female, white, stage:Stage I, alive, 355 days
20.0
TCGA-DV-5573-01A
0 years, male, white, stage:Stage I, alive, 1130 days
20.0
TCGA-CJ-4918-01A
0 years, male, white, stage:Stage IV, dead, 93 days
19.9
TCGA-BP-5195-01A
0 years, male, white, stage:Stage I, alive, 749 days
19.9
TCGA-BP-5177-01A
0 years, female, white, stage:Stage I, alive, 293 days
19.9
TCGA-B0-5711-01A
0 years, male, white, stage:Stage III, alive, 3989 days
19.9
TCGA-B0-4844-01A
0 years, male, white, stage:Stage IV, dead, 313 days
19.9
TCGA-B0-5402-01A
0 years, male, white, stage:Stage IV, alive, 1290 days
19.9
TCGA-BP-4784-01A
0 years, female, white, stage:Stage I, alive, 1854 days
19.8
TCGA-B0-5096-01A
0 years, female, white, stage:Stage III, dead, 68 days
19.8
TCGA-A3-3324-01A
0 years, male, white, stage:Stage I, alive, 1186 days
19.8
TCGA-BP-5202-01A
0 years, male, white, stage:Stage III, alive, 29 days
19.7
TCGA-B0-5399-01A
0 years, male, white, stage:Stage I, alive, 1411 days
19.7
TCGA-DV-5568-01A
0 years, male, white, stage:Stage I, alive, 370 days
19.7
TCGA-BP-4355-01A
0 years, female, white, stage:Stage III, dead, 953 days
19.7
TCGA-DV-A4W0-01A
0 years, male, black or african american, stage:Stage I, alive, 2470 days
19.6
TCGA-B4-5835-01A
0 years, female, white, stage:Stage I, alive, 16 days
19.6
TCGA-BP-5184-01A
0 years, male, white, stage:Stage I, alive, 1133 days
19.6
TCGA-CZ-5462-01A
0 years, male, white, stage:Stage IV, dead, 311 days
19.6
TCGA-CZ-5456-01A
0 years, male, white, stage:Stage II, alive, 2422 days
19.6
TCGA-A3-3307-01A
0 years, male, stage:Stage III, alive, 1436 days
19.6
TCGA-BP-4807-01A
0 years, male, white, stage:Stage I, alive, 211 days
19.5
TCGA-BP-4347-01A
0 years, male, white, stage:Stage III, alive, 1367 days
19.5
TCGA-B0-5088-01A
0 years, male, white, stage:Stage I, dead, 563 days
19.5
TCGA-CJ-4889-01A
0 years, female, white, stage:Stage I, alive, 1946 days
19.5
TCGA-CJ-4641-01A
0 years, female, white, stage:Stage IV, dead, 1661 days
19.5
TCGA-CZ-4857-01A
0 years, male, white, stage:Stage IV, dead, 1432 days
19.5
TCGA-B0-5097-01A
0 years, female, white, stage:Stage III, alive, 665 days
19.4
TCGA-CJ-6030-01A
0 years, male, white, stage:Stage I, dead, 2299 days
19.4
TCGA-BP-4999-01A
0 years, male, white, stage:Stage I, alive, 1266 days
19.4
TCGA-BP-5176-01A
0 years, female, white, stage:Stage I, dead, 1590 days
19.4
TCGA-BP-4765-01A
0 years, male, white, stage:Stage I, alive, 2184 days
19.2
TCGA-BP-4164-01A
0 years, female, white, stage:Stage III, dead, 992 days
19.1
TCGA-A3-3311-01A
0 years, male, stage:Stage I, dead, 1191 days
19.1
TCGA-G6-A8L6-01A
0 years, male, black or african american, stage:Stage IV, dead, 313 days
19.1
TCGA-BP-4325-01A
0 years, female, white, stage:Stage I, alive, 2964 days
19.1
TCGA-BP-5173-01A
0 years, male, white, stage:Stage I, dead, 62 days
19.0
TCGA-B0-5108-01A
0 years, male, white, stage:Stage III, alive, 1782 days
19.0
TCGA-CJ-5684-01A
0 years, male, white, stage:Stage III, alive, 2231 days
19.0
TCGA-CZ-5467-01A
0 years, female, white, stage:Stage III, dead, 73 days
19.0
TCGA-BP-4782-01A
0 years, female, white, stage:Stage I, alive, 354 days
19.0
TCGA-CZ-4853-01A
0 years, male, white, stage:Stage I, alive, 774 days
19.0
TCGA-A3-3374-01A
0 years, female, black or african american, stage:Stage I, alive, 1314 days
18.9
TCGA-B0-4828-01A
0 years, male, white, stage:Stage IV, dead, 307 days
18.9
TCGA-BP-4161-01A
0 years, male, white, stage:Stage I, alive, 2746 days
18.9
TCGA-BP-4959-01A
0 years, male, white, stage:Stage I, alive, 2660 days
18.9
TCGA-BP-5180-01A
0 years, male, white, stage:Stage I, alive, 2263 days
18.9
TCGA-AK-3433-01A
0 years, female, white, stage:Stage II, alive, 3409 days
18.9
TCGA-CJ-4637-01A
0 years, female, white, stage:Stage IV, dead, 2227 days
18.9
TCGA-CJ-5676-01A
0 years, male, white, stage:Stage III, alive, 4067 days
18.9
TCGA-CJ-4870-01A
0 years, female, black or african american, stage:Stage III, alive, 1498 days
18.8
TCGA-AK-3456-01A
0 years, male, black or african american, stage:Stage II, alive, 1143 days
18.8
TCGA-CZ-5455-01A
0 years, male, white, stage:Stage IV, dead, 561 days
18.8
TCGA-B0-5712-01A
0 years, female, black or african american, stage:Stage IV, alive, 2722 days
18.8
TCGA-B0-4700-01A
0 years, male, white, stage:Stage IV, dead, 1980 days
18.8
TCGA-B0-4690-01A
0 years, male, white, stage:Stage IV, dead, 43 days
18.8
TCGA-BP-5168-01A
0 years, male, white, stage:Stage I, dead, 1463 days
18.7
TCGA-B0-5077-01A
0 years, male, white, stage:Stage I, dead, 1317 days
18.7
TCGA-B0-4694-01A
0 years, male, white, stage:Stage III, dead, 106 days
18.6
TCGA-DV-A4VZ-01A
0 years, male, black or african american, stage:Stage I, alive, 365 days
18.6
TCGA-BP-4972-01A
0 years, female, white, stage:Stage III, alive, 1502 days
18.6
TCGA-BP-4787-01A
0 years, female, white, stage:Stage IV, dead, 480 days
18.6
TCGA-A3-3378-01A
0 years, male, white, stage:Stage I, alive, 630 days
18.5
TCGA-BP-4170-01A
0 years, female, white, stage:Stage I, dead, 2343 days
18.4
TCGA-B8-4151-01A
0 years, female, white, stage:Stage III, alive, 1299 days
18.4
TCGA-B8-4622-01A
0 years, male, white, stage:Stage IV, alive, 1525 days
18.4
TCGA-CZ-5459-01A
0 years, male, white, stage:Stage III, alive, 1683 days
18.4
TCGA-MW-A4EC-01A
0 years, female, black or african american, stage:Stage I, alive, 498 days
18.4
TCGA-CZ-4866-01A
0 years, female, white, stage:Stage I, alive, 3267 days
18.4
TCGA-AK-3431-01A
0 years, female, white, stage:Stage II, dead, 2241 days
18.4
TCGA-B4-5843-01A
0 years, male, white, stage:Stage I, alive, 11 days
18.3
TCGA-B0-4693-01A
0 years, female, white, stage:Stage III, dead, 77 days
18.3
TCGA-CJ-5686-01A
0 years, female, white, stage:Stage I, alive, 2038 days
18.3
TCGA-CJ-4882-01A
0 years, male, black or african american, stage:Stage III, alive, 1883 days
18.3
TCGA-B8-4619-01A
0 years, male, white, stage:Stage I, alive, 523 days
18.3
TCGA-B0-5710-01A
0 years, male, white, stage:Stage I, alive, 2430 days
18.3
TCGA-CZ-5984-01A
0 years, male, white, stage:Stage I, alive, 2067 days
18.2
TCGA-CZ-5460-01A
0 years, male, white, stage:Stage IV, alive, 2873 days
18.2
TCGA-B8-A54D-01A
0 years, male, black or african american, stage:Stage III, alive, 830 days
18.2
TCGA-B0-5696-01A
0 years, male, white, stage:Stage III, alive, 2609 days
18.2
TCGA-CJ-6033-01A
0 years, female, white, stage:Stage IV, dead, 224 days
18.1
TCGA-CZ-5466-01A
0 years, male, stage:Stage III, alive, 685 days
18.0
TCGA-BP-4797-01A
0 years, male, white, stage:Stage III, alive, 1107 days
18.0
TCGA-CJ-4902-01A
0 years, male, white, stage:Stage III, alive, 1520 days
18.0
TCGA-AK-3453-01A
0 years, female, white, stage:Stage II, alive, 2531 days
18.0
TCGA-A3-3367-01A
0 years, male, white, stage:Stage I, alive, 2270 days
17.9
TCGA-BP-4758-01A
0 years, male, white, stage:Stage I, alive, 2208 days
17.8
TCGA-AK-3428-01A
0 years, male, white, stage:Stage III, alive, 3728 days
17.7
TCGA-B0-4837-01A
0 years, male, white, stage:Stage I, dead, 1378 days
17.7
TCGA-BP-4975-01A
0 years, male, white, stage:Stage I, alive, 1433 days
17.6
TCGA-BP-5194-01A
0 years, male, white, stage:Stage I, alive, 408 days
17.6
TCGA-CZ-5986-01A
0 years, male, white, stage:Stage I, alive, 373 days
17.5
TCGA-CZ-5463-01A
0 years, male, white, stage:Stage II, alive, 662 days
17.5
TCGA-BP-4162-01A
0 years, female, white, stage:Stage I, alive, 3074 days
17.4
TCGA-CJ-4881-01A
0 years, male, white, stage:Stage III, alive, 2014 days
17.4
TCGA-CJ-4871-01A
0 years, male, white, stage:Stage IV, alive, 2423 days
17.4
TCGA-B0-5083-01A
0 years, male, white, stage:Stage I, dead, 1045 days
17.4
TCGA-BP-5006-01A
0 years, male, white, stage:Stage I, alive, 840 days
17.4
TCGA-CJ-4916-01A
0 years, female, white, stage:Stage III, alive, 1373 days
17.3
TCGA-B0-5698-01A
0 years, male, black or african american, stage:Stage I, alive, 3631 days
17.3
TCGA-BP-4326-01A
0 years, female, white, stage:Stage I, dead, 1625 days
17.2
TCGA-CZ-5468-01A
0 years, male, white, stage:Stage IV, dead, 59 days
17.2
TCGA-A3-3380-01A
0 years, male, stage:Stage I, alive, 567 days
17.2
TCGA-CZ-4860-01A
0 years, male, white, stage:Stage IV, dead, 206 days
17.2
TCGA-CZ-4856-01A
0 years, female, white, stage:Stage I, alive, 18 days
17.2
TCGA-CJ-4903-01A
0 years, male, white, stage:Stage I, alive, 1560 days
17.1
TCGA-B0-5694-01A
0 years, male, white, stage:Stage III, dead, 480 days
17.1
TCGA-B0-4833-01A
0 years, female, white, stage:Stage I, dead, 2386 days
17.0
TCGA-A3-3383-01A
0 years, male, white, stage:Stage I, alive, 861 days
17.0
TCGA-G6-A5PC-01A
0 years, female, black or african american, stage:Stage IV, dead, 242 days
16.9
TCGA-AK-3434-01A
0 years, male, white, stage:Stage I, alive, 2087 days
16.9
TCGA-B0-5080-01A
0 years, male, white, stage:Stage IV, dead, 342 days
16.9
TCGA-DV-5574-01A
0 years, male, white, stage:Stage I, alive, 2016 days
16.9
TCGA-CJ-4887-01A
0 years, male, white, stage:Stage IV, dead, 932 days
16.8
TCGA-BP-4756-01A
0 years, female, asian, stage:Stage I, alive, 374 days
16.8
TCGA-A3-3316-01A
0 years, male, white, stage:Stage II, alive, 1493 days
16.8
TCGA-CZ-5987-01A
0 years, male, white, stage:Stage IV, dead, 445 days
16.7
TCGA-A3-3329-01A
0 years, male, white, stage:Stage I, alive, 1624 days
16.7
TCGA-CJ-4873-01A
0 years, female, white, stage:Stage III, alive, 1776 days
16.6
TCGA-CJ-4897-01A
0 years, female, white, stage:Stage III, alive, 3341 days
16.6
TCGA-A3-3357-01A
0 years, male, white, stage:Stage II, alive, 2688 days
16.6
TCGA-B0-5081-01A
0 years, female, white, stage:Stage III, dead, 362 days
16.5
TCGA-B0-5120-01A
0 years, female, white, stage:Stage I, alive, 1169 days
16.4
TCGA-B0-4823-01A
0 years, male, white, stage:Stage I, dead, 454 days
16.4
TCGA-AK-3460-01A
0 years, male, white, stage:Stage I, alive, 2508 days
16.3
TCGA-CW-5588-01A
0 years, female, white, stage:Stage I, alive, 2017 days
16.3
TCGA-CJ-5679-01A
0 years, male, white, stage:Stage III, dead, 679 days
16.3
TCGA-BP-5001-01A
0 years, female, white, stage:Stage I, alive, 1177 days
16.3
TCGA-B0-4822-01A
0 years, male, white, stage:Stage II, dead, 1111 days
16.2
TCGA-CJ-6027-01A
0 years, male, white, stage:Stage I, dead, 3615 days
16.2
TCGA-CJ-4891-01A
0 years, female, white, stage:Stage III, dead, 819 days
16.1
TCGA-G6-A8L7-01A
0 years, female, black or african american, stage:Stage I, alive, 2133 days
16.1
TCGA-B0-5075-01A
0 years, female, white, stage:Stage III, dead, 637 days
16.0
TCGA-BP-4804-01A
0 years, male, white, stage:Stage I, alive, 1459 days
15.9
TCGA-BP-4332-01A
0 years, male, white, stage:Stage III, alive, 1133 days
15.9
TCGA-BP-4969-01A
0 years, female, white, stage:Stage I, alive, 1794 days
15.9
TCGA-CJ-4888-01A
0 years, male, white, stage:Stage IV, dead, 1567 days
15.9
TCGA-BP-4803-01A
0 years, male, white, stage:Stage III, alive, 204 days
15.9
TCGA-CJ-4644-01A
0 years, female, white, stage:Stage IV, dead, 336 days
15.8
TCGA-CJ-4885-01A
0 years, male, white, stage:Stage IV, alive, 3451 days
15.8
TCGA-CJ-6028-01A
0 years, male, white, stage:Stage IV, dead, 1625 days
15.8
TCGA-AK-3465-01A
0 years, female, black or african american, stage:Stage I, alive, 369 days
15.8
TCGA-BP-5187-01A
0 years, male, white, stage:Stage I, alive, 406 days
15.8
TCGA-BP-4968-01A
0 years, male, white, stage:Stage I, alive, 1746 days
15.7
TCGA-BP-4344-01A
0 years, female, white, stage:Stage I, alive, 1666 days
15.7
TCGA-B0-4839-01A
0 years, female, white, stage:Stage I, dead, 1639 days
15.7
TCGA-BP-5010-01A
0 years, male, white, stage:Stage III, dead, 878 days
15.7
TCGA-B0-4847-01A
0 years, male, white, stage:Stage IV, dead, 793 days
15.6
TCGA-CJ-4638-01A
0 years, female, white, stage:Stage IV, dead, 431 days
15.5
TCGA-A3-3319-01A
0 years, male, white, stage:Stage I, alive, 1130 days
15.5
TCGA-BP-4334-01A
0 years, male, white, stage:Stage III, dead, 645 days
15.4
TCGA-CZ-5470-01A
0 years, female, stage:Stage II, alive, 386 days
15.3
TCGA-CZ-5457-01A
0 years, male, white, stage:Stage III, alive, 2754 days
15.3
TCGA-CZ-5465-01A
0 years, female, stage:Stage III, dead, 2564 days
15.2
TCGA-A3-3313-01A
0 years, male, black or african american, stage:Stage I, dead, 735 days
15.2
TCGA-CZ-5464-01A
0 years, male, white, stage:Stage IV, alive, 2128 days
15.1
TCGA-B0-4843-01A
0 years, male, white, stage:Stage III, dead, 320 days
15.0
TCGA-BP-4163-01A
0 years, female, white, stage:Stage III, alive, 2839 days
14.9
TCGA-B0-5085-01A
0 years, female, white, stage:Stage III, dead, 770 days
14.9
TCGA-B4-5838-01A
0 years, male, white, stage:'--, alive, 166 days
14.9
TCGA-CJ-4874-01A
0 years, female, white, stage:Stage I, alive, 2283 days
14.8
TCGA-CJ-6031-01A
0 years, male, white, stage:Stage I, alive, 1906 days
14.8
TCGA-B2-3924-01A
0 years, male, white, stage:Stage I, alive, 1092 days
14.7
TCGA-A3-3306-01A
0 years, male, white, stage:Stage I, alive, 1120 days
14.7
TCGA-B0-4834-01A
0 years, male, white, stage:Stage I, dead, 2090 days
14.7
TCGA-CZ-4861-01A
0 years, male, white, stage:Stage II, dead, 446 days
14.6
TCGA-B0-5117-01A
0 years, male, white, stage:Stage I, alive, 1608 days
14.5
TCGA-A3-3358-01A
0 years, female, white, stage:Stage I, alive, 1307 days
14.5
TCGA-B8-A54E-01A
0 years, female, black or african american, stage:Stage I, alive, 909 days
14.5
TCGA-B0-4842-01A
0 years, female, white, stage:Stage III, dead, 1724 days
14.5
TCGA-BP-4964-01A
0 years, female, white, stage:Stage I, alive, 1862 days
14.5
TCGA-B0-5084-01A
0 years, male, white, stage:Stage IV, dead, 222 days
14.4
TCGA-BP-4762-01A
0 years, male, white, stage:Stage I, dead, 1343 days
14.4
TCGA-BP-4776-01A
0 years, male, white, stage:Stage I, alive, 411 days
14.4
TCGA-BP-4981-01A
0 years, female, white, stage:Stage III, dead, 1097 days
14.4
TCGA-B0-4813-01A
0 years, male, white, stage:Stage III, dead, 18 days
14.3
TCGA-CJ-4912-01A
0 years, male, white, stage:Stage II, alive, 1657 days
14.3
TCGA-A3-3385-01A
0 years, female, white, stage:Stage I, alive, 1993 days
14.3
TCGA-BP-4174-01A
0 years, male, white, stage:Stage II, alive, 1879 days
14.3
TCGA-BP-4989-01A
0 years, male, white, stage:Stage III, alive, 118 days
14.3
TCGA-CZ-4865-01A
0 years, female, white, stage:Stage I, dead, 166 days
14.1
TCGA-BP-4798-01A
0 years, male, white, stage:'--, dead, 334 days
14.1
TCGA-A3-3363-01A
0 years, male, asian, stage:Stage II, alive, 319 days
14.1
TCGA-B0-4713-01A
0 years, female, white, stage:Stage III, dead, 202 days
13.9
TCGA-BP-5170-01A
0 years, male, white, stage:Stage I, alive, 2412 days
13.9
TCGA-BP-4158-01A
0 years, male, white, stage:Stage I, alive, 3377 days
13.8
TCGA-A3-3335-01A
0 years, male, white, stage:Stage II, alive, 1886 days
13.8
TCGA-B0-4714-01A
0 years, male, white, stage:Stage IV, dead, 99 days
13.8
TCGA-AK-3429-01A
0 years, female, white, stage:Stage II, alive, 3328 days
13.7
TCGA-AK-3426-01A
0 years, male, white, stage:Stage III, dead, 885 days
13.7
TCGA-BP-4971-01A
0 years, male, white, stage:Stage III, alive, 1487 days
13.7
TCGA-B0-4691-01A
0 years, male, white, stage:Stage IV, dead, 139 days
13.6
TCGA-CJ-4890-01A
0 years, male, white, stage:Stage IV, alive, 3519 days
13.6
TCGA-AK-3436-01A
0 years, male, white, stage:Stage IV, alive, 3331 days
13.4
TCGA-BP-4345-01A
0 years, male, white, stage:Stage III, alive, 1516 days
13.4
TCGA-CJ-5678-01A
0 years, male, black or african american, stage:Stage IV, dead, 574 days
13.4
TCGA-CJ-4884-01A
0 years, female, white, stage:Stage III, alive, 1759 days
13.2
TCGA-CJ-4901-01A
0 years, male, white, stage:Stage III, alive, 1450 days
13.2
TCGA-BP-5000-01A
0 years, male, white, stage:Stage I, alive, 563 days
13.2
TCGA-B0-5116-01A
0 years, male, white, stage:Stage III, alive, 1274 days
13.1
TCGA-B0-4815-01A
0 years, male, white, stage:Stage III, dead, 1588 days
13.1
TCGA-AK-3425-01A
0 years, male, white, stage:Stage I, alive, 3343 days
13.0
TCGA-B0-4817-01A
0 years, male, white, stage:Stage III, dead, 1019 days
12.7
TCGA-A3-3365-01A
0 years, male, white, stage:Stage I, alive, 873 days
12.7
TCGA-CJ-4872-01A
0 years, male, white, stage:Stage I, alive, 1435 days
12.6
TCGA-B0-4852-01A
0 years, female, white, stage:Stage II, dead, 1121 days
12.5
TCGA-B0-5706-01A
0 years, male, white, stage:Stage II, alive, 3205 days
12.5
TCGA-BP-5185-01A
0 years, male, white, stage:Stage I, alive, 1132 days
12.5
TCGA-BP-4759-01A
0 years, male, white, stage:Stage I, alive, 2372 days
12.4
TCGA-BP-5178-01A
0 years, male, white, stage:Stage IV, dead, 1912 days
12.3
TCGA-CZ-5454-01A
0 years, male, white, stage:Stage IV, dead, 722 days
12.3
TCGA-AK-3455-01A
0 years, female, white, stage:Stage III, dead, 683 days
12.3
TCGA-BP-4337-01A
0 years, female, white, stage:Stage III, dead, 2 days
12.3
TCGA-B8-4621-01A
0 years, male, black or african american, stage:Stage I, alive, 788 days
12.2
TCGA-BP-4166-01A
0 years, male, white, stage:Stage III, alive, 13 days
12.2
TCGA-BP-4962-01A
0 years, male, white, stage:Stage II, alive, 1785 days
12.2
TCGA-CW-6090-01A
0 years, male, white, stage:Stage I, alive, 2552 days
12.1
TCGA-BP-4335-01A
0 years, female, white, stage:Stage IV, dead, 475 days
12.0
TCGA-BP-4992-01A
0 years, male, white, stage:Stage I, alive, 501 days
11.9
TCGA-BP-5190-01A
0 years, male, white, stage:Stage I, alive, 1011 days
11.9
TCGA-CJ-4900-01A
0 years, female, white, stage:Stage IV, dead, 1714 days
11.8
TCGA-B8-4620-01A
0 years, female, white, stage:Stage III, alive, 777 days
11.7
TCGA-BP-4176-01A
0 years, male, white, stage:Stage I, alive, 1955 days
11.6
TCGA-BP-5175-01A
0 years, male, white, stage:Stage I, alive, 932 days
11.6
TCGA-CJ-4636-01A
0 years, male, white, stage:Stage III, alive, 1924 days
11.6
TCGA-B0-4841-01A
0 years, male, white, stage:Stage IV, dead, 204 days
11.4
TCGA-BP-4960-01A
0 years, male, white, stage:Stage II, alive, 2172 days
11.4
TCGA-B0-5109-01A
0 years, male, white, stage:Stage III, dead, 587 days
11.4
TCGA-B0-5400-01A
0 years, female, white, stage:Stage III, alive, 1733 days
11.3
TCGA-B0-5121-01A
0 years, male, white, stage:Stage I, alive, 1485 days
11.2
TCGA-B2-4098-01A
0 years, female, black or african american, stage:Stage I, dead, 51 days
11.2
TCGA-B0-4697-01A
0 years, female, white, stage:Stage IV, dead, 578 days
10.9
TCGA-BP-4167-01A
0 years, male, white, stage:Stage III, alive, 2718 days
10.8
TCGA-BP-4329-01A
0 years, male, white, stage:Stage III, dead, 845 days
10.7
TCGA-MM-A564-01A
0 years, male, black or african american, stage:Stage II, alive, 607 days
10.7
TCGA-CJ-4875-01A
0 years, male, white, stage:Stage IV, dead, 3554 days
10.6
TCGA-BP-4160-01A
0 years, male, white, stage:Stage III, alive, 2881 days
10.5
TCGA-BP-5009-01A
0 years, male, white, stage:Stage I, dead, 1092 days
10.5
TCGA-B2-4099-01A
0 years, male, white, stage:Stage I, alive, 972 days
10.5
TCGA-B0-4819-01A
0 years, female, white, stage:Stage IV, dead, 183 days
10.3
TCGA-B0-4712-01A
0 years, male, white, stage:Stage IV, dead, 1337 days
10.3
TCGA-BP-4338-01A
0 years, male, white, stage:Stage I, alive, 2859 days
10.3
TCGA-B0-4811-01A
0 years, male, white, stage:Stage III, dead, 1417 days
10.1
TCGA-B8-5162-01A
0 years, male, white, stage:Stage II, alive, 36 days
10.1
TCGA-AS-3777-01A
0 years, male, white, stage:Stage I, alive, 1238 days
10.0
TCGA-DV-A4VX-01A
0 years, male, black or african american, stage:Stage IV, dead, 1626 days
10.0
TCGA-BP-4777-01A
0 years, male, white, stage:Stage I, alive, 1731 days
9.9
TCGA-B8-A54I-01A
0 years, male, black or african american, stage:Stage I, alive, 150 days
9.7
TCGA-BP-5191-01A
0 years, male, white, stage:Stage III, alive, 967 days
9.0
TCGA-BP-4353-01A
0 years, male, white, stage:Stage I, dead, 375 days
8.7
TCGA-BP-4159-01A
0 years, male, white, stage:Stage I, dead, 2601 days
8.3
TCGA-B0-5702-01A
0 years, male, white, stage:Stage I, alive, 2172 days
7.9
TCGA-BP-5169-01A
0 years, male, white, stage:Stage I, alive, 193 days
7.6
TCGA-B8-4154-01A
0 years, female, white, stage:Stage I, alive, 1380 days
7.1
TCGA-BP-4763-01A
0 years, female, white, stage:Stage I, dead, 1270 days
5.7
TCGA-AK-3427-01A
0 years, male, white, stage:Stage I, alive, 3583 days
5.3
TCGA-AK-3451-01A
0 years, male, white, stage:Stage II, alive, 2868 days
4.6
TCGA-BP-4343-01A
0 years, male, white, stage:Stage III, dead, 1912 days
4.4
TCGA-AK-3458-01A
0 years, male, white, stage:Stage I, alive, 1168 days
4.2
TCGA-BP-4799-01A
0 years, male, white, stage:Stage III, dead, 1133 days
3.7
TCGA-B2-5635-01A
0 years, male, white, stage:Stage I, alive, 755 days
3.6
TCGA-B2-5633-01A
0 years, male, white, stage:Stage I, alive, 963 days
3.6
TCGA-B4-5832-01A
0 years, male, white, stage:Stage III, alive, 155 days
3.4
TCGA-AK-3447-01A
0 years, male, white, stage:Stage II, alive, 1217 days
1.8
TCGA-CZ-5989-01A
0 years, male, white, stage:Stage II, alive, 1905 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCAF1 is not prognostic in Kidney Renal Clear Cell Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.0
Number of samples
100
Samples
Sample
Description
TPM
ccRCC-80
0 years, male, NA, stage:pT2N0M0, alive, 3000 days
48.1
ccRCC-30
0 years, male, NA, stage:pT2N0M0, dead, 420 days
44.3
ccRCC-66
0 years, female, NA, stage:pT3bN0M1, alive, 2520 days
39.0
ccRCC-95
0 years, male, NA, stage:pT1bN0M0, alive, 3960 days
38.8
ccRCC-87
0 years, male, NA, stage:pT1bN0M0, alive, 2370 days
35.8
ccRCC-96
0 years, male, NA, stage:pT1aN0M0, alive, 3930 days
35.0
ccRCC-15
0 years, female, NA, stage:pT2N0M0, dead, 2070 days
34.9
ccRCC-86
0 years, female, NA, stage:pT1bN0M0, alive, 3390 days
34.3
ccRCC-20
0 years, female, NA, stage:pT3aN0M1, alive, 930 days
34.3
ccRCC-5
0 years, male, NA, stage:pT1aN0M0, alive, 2940 days
34.2
ccRCC-10
0 years, male, NA, stage:pT3aN2M1, dead, 90 days
33.8
ccRCC-50
0 years, male, NA, stage:pT3bN0M0, alive, 900 days
33.8
ccRCC-21
0 years, male, NA, stage:pT1bN0M0, alive, 1080 days
33.8
ccRCC-69
0 years, male, NA, stage:pT1aN0M0, alive, 2670 days
32.6
ccRCC-29
0 years, female, NA, stage:pT1aN0M0, alive, 1710 days
32.4
ccRCC-60
0 years, female, NA, stage:pT1aN0M0, alive, 1470 days
32.0
ccRCC-6
0 years, male, NA, stage:pT1bN0M0, alive, 2820 days
31.4
ccRCC-65
0 years, male, NA, stage:pT3bN0M1, dead, 300 days
31.3
ccRCC-85
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
30.9
ccRCC-44
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
30.5
ccRCC-17
0 years, female, NA, stage:pT1bN0M0, alive, 2220 days
30.3
ccRCC-84
0 years, male, NA, stage:pT1bN0M0, alive, 2010 days
30.3
ccRCC-77
0 years, male, NA, stage:pT1bN0M0, alive, 1860 days
30.1
ccRCC-72
0 years, male, NA, stage:pT1bN0M0, alive, 2760 days
29.7
ccRCC-71
0 years, male, NA, stage:pT1bN0M0, alive, 2160 days
29.6
ccRCC-35
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
29.6
ccRCC-97
0 years, male, NA, stage:pT1aN2M1, dead, 990 days
29.5
ccRCC-75
0 years, male, NA, stage:pT3aN1M1, dead, 180 days
29.3
ccRCC-52
0 years, female, NA, stage:pT3bN0M1, alive, 1350 days
29.2
ccRCC-79
0 years, male, NA, stage:pT1bN0M0, alive, 2670 days
29.1
ccRCC-92
0 years, male, NA, stage:pT1aN0M0, alive, 3660 days
29.0
ccRCC-14
0 years, male, NA, stage:pT3cN0M0, alive, 2280 days
29.0
ccRCC-51
0 years, male, NA, stage:pT3aN0M0, alive, 1410 days
28.8
ccRCC-98
0 years, male, NA, stage:pT1aN0M0, alive, 30 days
28.8
ccRCC-3
0 years, male, NA, stage:pT3bN1M0, dead, 240 days
28.8
ccRCC-18
0 years, female, NA, stage:pT1aN0M0, alive, 2130 days
28.8
ccRCC-93
0 years, male, NA, stage:pT1bN0M0, alive, 3660 days
28.7
ccRCC-13
0 years, female, NA, stage:pT3aN2M0, dead, 540 days
28.6
ccRCC-58
0 years, male, NA, stage:pT1aN0M0, alive, 1110 days
28.5
ccRCC-94
0 years, male, NA, stage:pT1bN0M0, dead, 480 days
28.4
ccRCC-89
0 years, male, NA, stage:pT1aN0M0, alive, 3510 days
28.2
ccRCC-102
0 years, male, NA, stage:pT1bN0M0, alive, 4260 days
28.1
ccRCC-7
0 years, female, NA, stage:pT2N0M0, alive, 330 days
27.7
ccRCC-91
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
27.4
ccRCC-73
0 years, male, NA, stage:pT1aN0M0, alive, 2640 days
27.3
ccRCC-83
0 years, male, NA, stage:pT1aN0M0, alive, 300 days
26.8
ccRCC-48
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
26.7
ccRCC-68
0 years, male, NA, stage:pT1bN0M0, alive, 2640 days
26.6
ccRCC-46
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
26.5
ccRCC-31
0 years, male, NA, stage:pT1aN0M0, alive, 1560 days
26.4
ccRCC-38
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
26.2
ccRCC-61
0 years, male, NA, stage:pT1aN0M0, alive, 1470 days
26.0
ccRCC-64
0 years, male, NA, stage:pT3aN0M0, alive, 2430 days
25.9
ccRCC-40
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
25.9
ccRCC-67
0 years, male, NA, stage:pT1aN0M0, dead, 1260 days
25.8
ccRCC-53
0 years, male, NA, stage:pT1aN0M0, alive, 1260 days
25.6
ccRCC-54
0 years, male, NA, stage:pT1bN0M0, alive, 1200 days
25.6
ccRCC-25
0 years, male, NA, stage:pT1aN0M0, alive, 1350 days
25.3
ccRCC-62
0 years, male, NA, stage:pT1bN0M0, alive, 1620 days
24.8
ccRCC-90
0 years, male, NA, stage:pT1aN0M0, dead, 1170 days
24.7
ccRCC-59
0 years, male, NA, stage:pT1bN0M0, alive, 930 days
24.7
ccRCC-34
0 years, male, NA, stage:pT3bN0M1, alive, 1530 days
24.5
ccRCC-42
0 years, male, NA, stage:pT3aN0M0, alive, 1170 days
24.5
ccRCC-100
0 years, male, NA, stage:pT1aN0M0, alive, 4260 days
24.1
ccRCC-23
0 years, male, NA, stage:pT1bN0M0, alive, 1170 days
24.0
ccRCC-43
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
23.6
ccRCC-103
0 years, female, NA, stage:pT1aN0M0, alive, 4350 days
23.5
ccRCC-76
0 years, female, NA, stage:pT3aN0M1, dead, 960 days
23.5
ccRCC-105
0 years, male, NA, stage:pT1aN0M0, alive, 2190 days
23.2
ccRCC-1
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
23.2
ccRCC-70
0 years, male, NA, stage:pT4N0M1, dead, 540 days
23.0
ccRCC-78
0 years, female, NA, stage:pT1aN0M0, alive, 2610 days
22.8
ccRCC-104
0 years, female, NA, stage:pT1aN0M0, alive, 3480 days
22.8
ccRCC-82
0 years, male, NA, stage:pT1aN0M0, alive, 3090 days
22.7
ccRCC-24
0 years, male, NA, stage:pT3bN0M0, dead, 750 days
22.6
ccRCC-32
0 years, male, NA, stage:pT2N0M0, dead, 1320 days
22.5
ccRCC-36
0 years, male, NA, stage:pT2N0M0, alive, 1410 days
21.9
ccRCC-106
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
21.7
ccRCC-88
0 years, male, NA, stage:pT1aN0M0, alive, 2880 days
21.3
ccRCC-19
0 years, female, NA, stage:pT2N0M0, alive, 2100 days
21.3
ccRCC-99
0 years, female, NA, stage:pT2N0M0, alive, 3330 days
21.1
ccRCC-12
0 years, male, NA, stage:pT1aN0M0, alive, 900 days
20.8
ccRCC-55
0 years, female, NA, stage:pT3bN0M0, alive, 1260 days
20.3
ccRCC-49
0 years, male, NA, stage:pT3bN0M0, alive, 1290 days
20.1
ccRCC-39
0 years, male, NA, stage:pT2N0M0, alive, 900 days
20.1
ccRCC-22
0 years, male, NA, stage:pT3bN0M0, dead, 330 days
20.0
ccRCC-45
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
19.7
ccRCC-81
0 years, male, NA, stage:pT3aN2M0, dead, 1290 days
19.6
ccRCC-4
0 years, male, NA, stage:pT1bN0M0, dead, 270 days
19.3
ccRCC-26
0 years, male, NA, stage:pT1bN0M0, alive, 1800 days
18.8
ccRCC-9
0 years, male, NA, stage:pT2N1M1, dead, 360 days
16.8
ccRCC-41
0 years, male, NA, stage:pT3bN0M0, dead, 540 days
16.8
ccRCC-56
0 years, male, NA, stage:pT1aN0M0, alive, 1950 days
15.9
ccRCC-37
0 years, female, NA, stage:pT1aN0M0, alive, 1500 days
15.0
ccRCC-2
0 years, male, NA, stage:pT1aN0M1, dead, 2190 days
14.7
ccRCC-16
0 years, male, NA, stage:pT2N0M0, alive, 2190 days
12.0
ccRCC-28
0 years, male, NA, stage:pT1bN0M0, alive, 1530 days
10.5
ccRCC-8
0 years, male, NA, stage:pT1bN0M0, alive, 2400 days
10.3
ccRCC-11
0 years, male, NA, stage:pT1aN0M0, alive, 2370 days
9.9
ccRCC-27
0 years, male, NA, stage:pT1aN0M0, alive, 1590 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCAF1 is not prognostic in Kidney Renal Papillary Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.8
Number of samples
282
Samples
Sample
Description
TPM
TCGA-G7-A8LD-01A
0 years, male, white, stage:Stage III, dead, 514 days
81.9
TCGA-F9-A7Q0-01A
0 years, female, asian, stage:Stage I, alive, 398 days
64.0
TCGA-A4-7734-01A
0 years, female, white, stage:Stage I, alive, 27 days
63.3
TCGA-UZ-A9PP-01A
0 years, male, white, stage:Stage I, alive, 3010 days
62.0
TCGA-O9-A75Z-01A
0 years, male, white, stage:Stage I, alive, 471 days
59.2
TCGA-BQ-5879-01A
0 years, female, white, stage:Stage III, dead, 697 days
55.0
TCGA-EV-5902-01A
0 years, male, white, stage:Stage I, alive, 578 days
54.8
TCGA-P4-AAVL-01A
0 years, male, white, stage:Stage III, dead, 487 days
54.7
TCGA-SX-A71S-01A
0 years, female, white, stage:Stage I, alive, 1504 days
52.7
TCGA-Y8-A894-01A
0 years, female, white, stage:Stage I, alive, 567 days
52.2
TCGA-5P-A9JU-01A
0 years, male, white, stage:Stage III, alive, 373 days
52.0
TCGA-B9-5155-01A
0 years, male, white, stage:Stage III, alive, 665 days
51.7
TCGA-5P-A9K8-01A
0 years, female, white, stage:'--, alive, 1309 days
50.9
TCGA-BQ-5894-01A
0 years, male, stage:Stage IV, alive, 84 days
46.4
TCGA-DZ-6133-01A
0 years, female, white, stage:Stage I, dead, 1557 days
46.1
TCGA-G7-6793-01A
0 years, female, white, stage:Stage IV, dead, 336 days
46.0
TCGA-G7-A4TM-01A
0 years, male, black or african american, stage:Stage I, alive, 768 days
45.8
TCGA-HE-7130-01A
female, stage:Stage III, alive, 1770 days
45.7
TCGA-GL-7966-01A
0 years, female, white, stage:Stage III, alive, 112 days
45.0
TCGA-B3-A6W5-01A
0 years, male, black or african american, stage:Stage I, alive, 309 days
44.6
TCGA-EV-5901-01A
0 years, female, white, stage:Stage I, alive, 1040 days
44.5
TCGA-UN-AAZ9-01A
0 years, female, black or african american, stage:Stage I, alive, 548 days
44.4
TCGA-BQ-5883-01A
0 years, female, black or african american, stage:Stage I, alive, 1242 days
44.1
TCGA-BQ-5891-01A
0 years, female, white, stage:Stage III, alive, 29 days
44.1
TCGA-A4-8098-01A
0 years, male, black or african american, stage:Stage I, alive, 896 days
43.8
TCGA-MH-A857-01A
0 years, male, black or african american, stage:Stage I, alive, 890 days
43.6
TCGA-HE-7129-01A
male, stage:Stage II, alive, 2492 days
42.8
TCGA-G7-A8LE-01A
0 years, male, white, stage:Stage I, alive, 2453 days
42.2
TCGA-DW-7842-01A
0 years, male, white, stage:Stage I, alive, 92 days
41.6
TCGA-BQ-5877-01A
0 years, male, black or african american, stage:Stage IV, dead, 270 days
40.0
TCGA-AL-7173-01A
0 years, female, white, stage:Stage IV, alive, 2060 days
39.8
TCGA-GL-A59R-01A
0 years, male, white, stage:Stage III, alive, 378 days
39.6
TCGA-B9-A5W7-01A
0 years, male, black or african american, stage:Stage I, alive, 585 days
39.5
TCGA-G7-6797-01A
0 years, male, white, stage:Stage III, alive, 765 days
39.5
TCGA-GL-6846-01A
0 years, male, white, stage:Stage IV, alive, 5925 days
39.2
TCGA-BQ-5878-01A
0 years, female, white, stage:Stage III, alive, 1938 days
39.0
TCGA-IZ-8196-01A
0 years, male, white, stage:Stage I, alive, 649 days
38.8
TCGA-UZ-A9PL-01A
0 years, male, white, stage:Stage II, alive, 3152 days
38.7
TCGA-Y8-A8S1-01A
0 years, male, white, stage:Stage I, alive, 404 days
38.7
TCGA-GL-7773-01A
0 years, male, white, stage:Stage I, alive, 393 days
38.5
TCGA-BQ-7050-01A
0 years, female, white, stage:Stage I, alive, 1864 days
38.4
TCGA-J7-8537-01A
0 years, female, asian, stage:Stage III, dead, 321 days
38.4
TCGA-B9-4116-01A
0 years, female, black or african american, stage:'--, alive, 627 days
37.7
TCGA-GL-8500-01A
0 years, male, white, stage:Stage I, alive, 841 days
37.6
TCGA-B1-A655-01A
0 years, female, white, stage:Stage I, alive, 510 days
37.1
TCGA-BQ-7051-01A
0 years, male, white, stage:Stage II, alive, 1533 days
37.0
TCGA-GL-A9DC-01A
0 years, female, white, stage:Stage I, alive, 392 days
37.0
TCGA-2Z-A9J9-01A
0 years, male, black or african american, stage:Stage I, alive, 2294 days
36.9
TCGA-UZ-A9PR-01A
0 years, male, white, stage:Stage I, alive, 2191 days
36.8
TCGA-DW-5560-01A
0 years, female, white, stage:Stage I, alive, 1486 days
36.5
TCGA-A4-A6HP-01A
0 years, male, white, stage:Stage I, alive, 379 days
36.1
TCGA-MH-A561-01A
0 years, male, white, stage:Stage I, alive, 841 days
35.8
TCGA-UZ-A9PQ-01A
0 years, male, black or african american, stage:Stage III, dead, 2624 days
35.7
TCGA-B1-A654-01A
0 years, female, black or african american, stage:Stage I, alive, 616 days
34.9
TCGA-G7-6792-01A
0 years, male, black or african american, stage:Stage I, alive, 2765 days
34.9
TCGA-F9-A97G-01A
0 years, male, asian, stage:Stage III, alive, 13 days
34.8
TCGA-DZ-6135-01A
0 years, male, stage:Stage I, alive, 2269 days
34.3
TCGA-F9-A8NY-01A
0 years, female, asian, stage:Stage IV, alive, 36 days
34.3
TCGA-V9-A7HT-01A
0 years, male, black or african american, stage:Stage II, alive, 965 days
34.0
TCGA-Y8-A896-01A
0 years, male, white, stage:Stage III, alive, 567 days
33.5
TCGA-SX-A7SU-01A
0 years, male, stage:Stage I, alive, 1331 days
32.9
TCGA-KV-A74V-01A
0 years, male, white, stage:Stage I, alive, 347 days
32.8
TCGA-DZ-6132-01A
0 years, male, stage:Stage I, alive, 2460 days
32.7
TCGA-Y8-A8RZ-01A
0 years, male, white, stage:Stage I, alive, 205 days
32.5
TCGA-KV-A6GE-01A
0 years, male, white, stage:Stage I, alive, 885 days
32.4
TCGA-UZ-A9PJ-01A
0 years, male, white, stage:Stage I, dead, 797 days
32.4
TCGA-BQ-5890-01A
0 years, male, white, stage:Stage III, alive, 233 days
32.4
TCGA-A4-A5Y0-01A
0 years, female, white, stage:Stage I, alive, 252 days
32.4
TCGA-EV-5903-01A
0 years, male, white, stage:Stage I, alive, 757 days
32.3
TCGA-DZ-6131-01A
0 years, male, white, stage:Stage III, alive, 2429 days
32.1
TCGA-B9-5156-01A
0 years, male, white, stage:'--, alive, 1338 days
31.9
TCGA-A4-7583-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
31.8
TCGA-A4-8515-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 709 days
31.6
TCGA-BQ-5887-01A
0 years, male, white, stage:Stage III, alive, 771 days
31.4
TCGA-A4-7288-01A
0 years, female, white, stage:'--, alive, 1857 days
31.3
TCGA-Y8-A8S0-01A
0 years, male, white, stage:Stage I, alive, 183 days
30.9
TCGA-B1-A47M-01A
0 years, male, black or african american, stage:Stage III, alive, 659 days
30.7
TCGA-IA-A83T-01A
0 years, male, white, stage:'--, dead, 2684 days
30.7
TCGA-2Z-A9JK-01A
0 years, male, white, stage:Stage III, alive, 1186 days
30.2
TCGA-UZ-A9PX-01A
0 years, male, white, stage:Stage I, alive, 1981 days
30.1
TCGA-HE-A5NH-01A
0 years, male, stage:Stage I, alive, 791 days
30.0
TCGA-B9-A5W8-01A
0 years, male, black or african american, stage:Stage II, alive, 524 days
30.0
TCGA-A4-A48D-01A
0 years, male, black or african american, stage:Stage I, alive, 379 days
30.0
TCGA-UZ-A9PM-01A
0 years, male, white, stage:Stage II, alive, 3811 days
29.9
TCGA-5P-A9JZ-01A
0 years, female, white, stage:'--, alive, 2744 days
29.9
TCGA-5P-A9KC-01A
0 years, female, white, stage:'--, alive, 377 days
29.8
TCGA-BQ-5884-01A
0 years, female, black or african american, stage:Stage I, alive, 792 days
29.8
TCGA-P4-A5E8-01A
0 years, male, white, stage:Stage III, dead, 1306 days
29.8
TCGA-2Z-A9J3-01A
0 years, male, white, stage:Stage II, dead, 1771 days
29.8
TCGA-2Z-A9JJ-01A
0 years, female, white, stage:Stage I, alive, 1213 days
29.7
TCGA-4A-A93W-01A
0 years, female, white, stage:Stage I, alive, 4 days
29.5
TCGA-P4-AAVK-01A
0 years, male, white, stage:Stage III, alive, 1590 days
29.4
TCGA-B9-A8YH-01A
0 years, male, black or african american, stage:Stage I, alive, 532 days
29.4
TCGA-IA-A40X-01A
0 years, female, black or african american, stage:Stage I, alive, 608 days
29.2
TCGA-UZ-A9PV-01A
0 years, male, white, stage:Stage I, alive, 1444 days
29.2
TCGA-BQ-5882-01A
0 years, male, stage:Stage III, dead, 658 days
29.0
TCGA-A4-8310-01A
0 years, male, white, stage:Stage III, alive, 780 days
28.9
TCGA-IA-A83W-01A
0 years, male, white, stage:Stage I, dead, 2043 days
28.9
TCGA-2Z-A9JR-01A
0 years, male, white, stage:Stage I, alive, 161 days
28.9
TCGA-A4-7287-01A
0 years, female, white, stage:Stage I, dead, 597 days
28.8
TCGA-DZ-6134-01A
0 years, male, white, stage:Stage I, alive, 1856 days
28.8
TCGA-G7-7501-01A
0 years, female, black or african american, stage:Stage III, dead, 624 days
28.6
TCGA-BQ-7055-01A
0 years, male, white, stage:Stage I, alive, 799 days
28.5
TCGA-B3-3926-01A
0 years, female, white, stage:Stage I, alive, 883 days
28.5
TCGA-B3-4104-01A
0 years, male, white, stage:Stage II, alive, 1049 days
28.5
TCGA-SX-A7SQ-01A
0 years, male, white, stage:Stage I, alive, 1266 days
28.4
TCGA-AL-3467-01A
0 years, female, white, stage:'--, alive, 2135 days
28.4
TCGA-2Z-A9JS-01A
0 years, male, white, stage:Stage I, dead, 492 days
28.3
TCGA-BQ-5889-01A
0 years, male, white, stage:Stage IV, dead, 329 days
28.1
TCGA-B9-A5W9-01A
0 years, male, white, stage:Stage I, alive, 5 days
27.9
TCGA-B1-7332-01A
0 years, female, black or african american, stage:Stage II, alive, 1141 days
27.9
TCGA-DW-7839-01A
0 years, female, white, stage:Stage I, alive, 419 days
27.8
TCGA-HE-A5NJ-01A
0 years, male, stage:'--, alive, 1726 days
27.7
TCGA-Y8-A8RY-01A
0 years, male, white, stage:Stage I, alive, 769 days
27.6
TCGA-IA-A40Y-01A
0 years, female, white, stage:Stage III, alive, 62 days
27.6
TCGA-A4-7915-01A
0 years, female, black or african american, stage:Stage II, alive, 7 days
27.4
TCGA-BQ-5893-01A
0 years, male, white, stage:Stage IV, dead, 241 days
27.4
TCGA-MH-A855-01A
0 years, female, black or african american, stage:Stage II, alive, 369 days
27.4
TCGA-2Z-A9JL-01A
0 years, male, black or african american, stage:Stage I, alive, 1006 days
27.3
TCGA-G7-A8LC-01A
0 years, male, white, stage:Stage I, alive, 702 days
27.3
TCGA-AL-A5DJ-01A
0 years, female, white, stage:Stage III, dead, 1498 days
27.3
TCGA-MH-A854-01A
0 years, female, black or african american, stage:Stage I, alive, 536 days
27.3
TCGA-F9-A7VF-01A
0 years, female, white, stage:Stage I, alive, 73 days
27.2
TCGA-A4-A57E-01A
0 years, male, white, stage:Stage IV, dead, 258 days
26.9
TCGA-MH-A55W-01A
0 years, male, black or african american, stage:Stage I, alive, 1043 days
26.8
TCGA-UZ-A9PK-01A
0 years, male, white, stage:Stage I, alive, 3571 days
26.8
TCGA-IZ-A6M9-01A
0 years, male, white, stage:Stage I, alive, 376 days
26.6
TCGA-5P-A9K4-01A
0 years, male, white, stage:'--, alive, 2184 days
26.6
TCGA-BQ-7053-01A
0 years, female, black or african american, stage:Stage III, alive, 1516 days
26.4
TCGA-G7-6796-01A
0 years, male, white, stage:Stage I, alive, 2173 days
26.3
TCGA-AT-A5NU-01A
0 years, male, white, stage:Stage I, alive, 67 days
26.3
TCGA-BQ-7062-01A
0 years, male, black or african american, stage:Stage I, alive, 116 days
26.2
TCGA-A4-A4ZT-01A
0 years, female, white, stage:Stage I, alive, 516 days
26.1
TCGA-SX-A71V-01A
0 years, male, white, stage:Stage I, alive, 876 days
26.1
TCGA-A4-A5Y1-01A
0 years, male, white, stage:Stage III, dead, 395 days
26.1
TCGA-BQ-5892-01A
0 years, male, white, stage:Stage I, alive, 364 days
26.0
TCGA-A4-7997-01A
0 years, male, white, stage:Stage I, alive, 927 days
26.0
TCGA-BQ-7059-01A
0 years, male, white, stage:Stage I, alive, 232 days
26.0
TCGA-A4-8516-01A
0 years, male, white, stage:Stage III, alive, 23 days
25.9
TCGA-SX-A71W-01A
0 years, male, white, stage:Stage I, alive, 1076 days
25.9
TCGA-5P-A9KH-01A
0 years, male, white, stage:'--, alive, 2051 days
25.9
TCGA-B3-8121-01A
0 years, female, black or african american, stage:Stage I, alive, 379 days
25.3
TCGA-GL-A4EM-01A
0 years, male, white, stage:Stage I, alive, 32 days
25.3
TCGA-SX-A7SN-01A
0 years, male, white, stage:Stage I, alive, 578 days
25.3
TCGA-P4-A5E7-01A
0 years, female, white, stage:Stage I, alive, 2649 days
25.2
TCGA-2Z-A9J8-01A
0 years, male, white, stage:Stage I, alive, 2790 days
25.0
TCGA-DW-5561-01A
0 years, male, black or african american, stage:Stage I, alive, 414 days
25.0
TCGA-B3-3925-01A
0 years, male, white, stage:Stage III, alive, 1029 days
24.9
TCGA-2Z-A9JI-01A
0 years, male, white, stage:Stage III, alive, 1567 days
24.8
TCGA-DW-7836-01A
0 years, male, white, stage:Stage I, alive, 1093 days
24.7
TCGA-BQ-5888-01A
0 years, female, white, stage:Stage I, alive, 403 days
24.7
TCGA-UZ-A9PN-01A
0 years, male, white, stage:Stage III, dead, 1136 days
24.6
TCGA-UZ-A9PU-01A
0 years, male, white, stage:Stage I, dead, 933 days
24.6
TCGA-2Z-A9JE-01A
0 years, male, white, stage:Stage I, alive, 1728 days
24.5
TCGA-IA-A83V-01A
0 years, male, white, stage:Stage I, dead, 2941 days
24.5
TCGA-5P-A9KE-01A
0 years, male, white, stage:'--, alive, 824 days
24.2
TCGA-P4-A5EB-01A
0 years, male, white, stage:Stage I, alive, 2477 days
24.1
TCGA-MH-A562-01A
0 years, male, black or african american, stage:Stage I, alive, 616 days
24.1
TCGA-2Z-A9J7-01A
0 years, male, white, stage:Stage IV, dead, 139 days
24.0
TCGA-Y8-A897-01A
0 years, female, white, stage:Stage I, alive, 549 days
24.0
TCGA-UZ-A9PZ-01A
0 years, male, white, stage:Stage III, alive, 657 days
24.0
TCGA-P4-A5E6-01A
0 years, male, black or african american, stage:Stage III, alive, 3035 days
23.9
TCGA-BQ-7049-01A
0 years, female, white, stage:Stage I, dead, 1364 days
23.7
TCGA-DW-7840-01A
0 years, male, black or african american, stage:Stage I, alive, 114 days
23.6
TCGA-G7-6789-01A
0 years, female, white, stage:Stage IV, dead, 122 days
23.4
TCGA-2Z-A9JM-01A
0 years, male, white, stage:Stage I, alive, 934 days
23.3
TCGA-5P-A9KA-01A
0 years, male, white, stage:'--, alive, 395 days
23.3
TCGA-BQ-7044-01A
0 years, male, white, stage:Stage III, alive, 3760 days
23.2
TCGA-BQ-7056-01A
0 years, female, white, stage:Stage III, alive, 612 days
23.1
TCGA-Y8-A895-01A
0 years, male, white, stage:Stage I, alive, 484 days
23.1
TCGA-MH-A856-01A
0 years, male, white, stage:Stage I, alive, 947 days
23.1
TCGA-SX-A71U-01A
0 years, male, white, stage:Stage I, alive, 1357 days
22.8
TCGA-B1-5398-01A
0 years, male, white, stage:Stage III, alive, 1251 days
22.5
TCGA-BQ-5875-01A
0 years, female, white, stage:Stage III, alive, 2639 days
22.5
TCGA-Y8-A898-01A
0 years, male, white, stage:Stage I, alive, 475 days
22.4
TCGA-5P-A9K9-01A
0 years, female, white, stage:'--, dead, 589 days
22.3
TCGA-SX-A7SM-01A
0 years, male, black or african american, stage:Stage IV, dead, 363 days
22.3
TCGA-A4-7828-01A
0 years, female, black or african american, stage:Stage I, alive, 238 days
22.2
TCGA-F9-A4JJ-01A
0 years, female, black or african american, stage:Stage III, dead, 325 days
22.1
TCGA-HE-A5NK-01A
0 years, male, stage:'--, alive, 2228 days
21.9
TCGA-5P-A9JV-01A
0 years, male, white, stage:'--, alive, 2043 days
21.9
TCGA-DW-7841-01A
0 years, male, black or african american, stage:Stage I, alive, 445 days
21.8
TCGA-A4-8630-01A
0 years, female, white, stage:Stage I, alive, 436 days
21.8
TCGA-J7-6720-01A
0 years, male, asian, stage:Stage I, alive, 388 days
21.8
TCGA-SX-A7SP-01A
0 years, female, white, stage:Stage I, dead, 496 days
21.8
TCGA-SX-A7SS-01A
0 years, male, white, stage:Stage I, alive, 1615 days
21.8
TCGA-BQ-5876-01A
0 years, male, white, stage:Stage I, alive, 586 days
21.7
TCGA-SX-A7SR-01A
0 years, male, white, stage:Stage II, alive, 805 days
21.6
TCGA-BQ-7061-01A
0 years, female, white, stage:Stage I, alive, 218 days
21.6
TCGA-A4-8312-01A
0 years, male, black or african american, stage:Stage I, alive, 708 days
21.4
TCGA-IZ-A6M8-01A
0 years, male, black or african american, stage:Stage I, alive, 497 days
21.4
TCGA-A4-7286-01A
0 years, male, white, stage:'--, alive, 554 days
21.2
TCGA-B9-4113-01A
0 years, male, black or african american, stage:Stage I, dead, 1536 days
21.2
TCGA-DW-7834-01A
0 years, male, white, stage:Stage I, alive, 3950 days
21.1
TCGA-2Z-A9J6-01A
0 years, male, white, stage:Stage I, alive, 1731 days
21.0
TCGA-2Z-A9J1-01A
0 years, male, white, stage:Stage I, alive, 2298 days
20.8
TCGA-BQ-7046-01A
0 years, male, white, stage:Stage I, alive, 2948 days
20.7
TCGA-PJ-A5Z9-01A
0 years, female, white, stage:Stage I, alive, 540 days
20.6
TCGA-B1-A657-01A
0 years, male, white, stage:Stage I, alive, 641 days
20.6
TCGA-5P-A9K0-01A
0 years, male, white, stage:'--, alive, 677 days
20.3
TCGA-BQ-5881-01A
0 years, male, white, stage:Stage I, alive, 1454 days
20.3
TCGA-2K-A9WE-01A
0 years, male, white, stage:Stage II, alive, 214 days
20.2
TCGA-WN-A9G9-01A
0 years, male, white, stage:Stage I, alive, 791 days
20.1
TCGA-5P-A9KF-01A
0 years, male, white, stage:'--, alive, 845 days
20.0
TCGA-SX-A7SL-01A
0 years, male, stage:Stage I, alive, 823 days
20.0
TCGA-SX-A71R-01A
0 years, male, white, stage:Stage I, alive, 1457 days
19.9
TCGA-GL-A59T-01A
0 years, male, white, stage:Stage I, alive, 546 days
19.8
TCGA-A4-8517-01A
0 years, male, white, stage:Stage I, alive, 597 days
19.4
TCGA-IA-A40U-01A
0 years, male, white, stage:Stage III, alive, 511 days
19.4
TCGA-5P-A9K2-01A
0 years, male, white, stage:'--, alive, 2392 days
19.3
TCGA-SX-A7SO-01A
0 years, male, white, stage:Stage I, alive, 1257 days
19.3
TCGA-B1-A47N-01A
0 years, male, white, stage:Stage I, alive, 1110 days
19.2
TCGA-A4-A5DU-01A
0 years, female, white, stage:Stage I, alive, 496 days
19.2
TCGA-P4-A5EA-01A
0 years, female, white, stage:Stage III, dead, 201 days
19.2
TCGA-2Z-A9JG-01A
0 years, male, white, stage:Stage I, alive, 1662 days
19.1
TCGA-5P-A9JY-01A
0 years, male, white, stage:'--, dead, 1508 days
19.1
TCGA-A4-7732-01A
0 years, male, black or african american, stage:'--, alive, 582 days
19.0
TCGA-BQ-7060-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 214 days
19.0
TCGA-UZ-A9PS-01A
0 years, female, black or african american, stage:Stage II, alive, 2167 days
18.9
TCGA-5P-A9K6-01A
0 years, male, white, stage:'--, alive, 1914 days
18.8
TCGA-GL-A9DE-01A
0 years, male, black or african american, stage:Stage I, alive, 496 days
18.8
TCGA-PJ-A5Z8-01A
0 years, female, white, stage:Stage I, alive, 600 days
18.6
TCGA-BQ-7045-01A
0 years, male, black or african american, stage:Stage I, dead, 1468 days
18.6
TCGA-MH-A55Z-01A
0 years, male, black or african american, stage:Stage I, alive, 845 days
18.5
TCGA-DW-7837-01A
0 years, male, black or african american, stage:Stage I, alive, 1142 days
18.5
TCGA-HE-A5NL-01A
0 years, male, stage:Stage I, alive, 767 days
18.4
TCGA-B9-A69E-01A
0 years, male, white, stage:Stage III, alive, 452 days
18.1
TCGA-B9-4117-01A
0 years, female, black or african american, stage:'--, alive, 14 days
17.9
TCGA-GL-A9DD-01A
0 years, male, white, stage:Stage I, alive, 341 days
17.3
TCGA-A4-8311-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.3
TCGA-B1-A47O-01A
0 years, female, white, stage:Stage I, alive, 842 days
17.1
TCGA-2Z-A9J5-01A
0 years, male, white, stage:Stage II, alive, 3050 days
17.1
TCGA-P4-A5ED-01A
0 years, male, white, stage:Stage I, alive, 2816 days
16.7
TCGA-KV-A6GD-01A
0 years, male, white, stage:Stage I, alive, 560 days
16.7
TCGA-4A-A93X-01A
0 years, male, white, stage:Stage IV, alive, 390 days
16.6
TCGA-2Z-A9JN-01A
0 years, female, black or african american, stage:Stage I, alive, 740 days
16.6
TCGA-P4-AAVO-01A
0 years, male, white, stage:Stage I, alive, 2400 days
16.5
TCGA-J7-A8I2-01A
0 years, male, asian, stage:Stage I, alive, 307 days
16.5
TCGA-A4-A5XZ-01A
0 years, female, white, stage:Stage II, alive, 479 days
16.3
TCGA-A4-7584-01A
0 years, male, black or african american, stage:Stage I, alive, 650 days
16.2
TCGA-4A-A93Y-01A
0 years, female, black or african american, stage:Stage II, alive, 352 days
16.2
TCGA-HE-A5NF-01A
0 years, male, stage:Stage I, alive, 2582 days
16.1
TCGA-AL-3472-01A
0 years, male, black or african american, stage:'--, alive, 2029 days
16.0
TCGA-2Z-A9JD-01A
0 years, male, white, stage:Stage I, alive, 1060 days
15.8
TCGA-UZ-A9PO-01A
0 years, male, white, stage:Stage I, alive, 1911 days
15.6
TCGA-2Z-A9JP-01A
0 years, male, white, stage:Stage I, alive, 893 days
15.5
TCGA-B9-A44B-01A
0 years, male, black or african american, stage:Stage III, alive, 361 days
15.2
TCGA-G7-A8LB-01A
0 years, male, white, stage:Stage IV, alive, 547 days
15.2
TCGA-G7-6795-01A
0 years, male, white, stage:Stage I, alive, 1194 days
15.1
TCGA-BQ-5885-01A
0 years, male, white, stage:Stage III, alive, 921 days
14.7
TCGA-A4-7585-01A
0 years, male, white, stage:Stage III, dead, 1070 days
14.3
TCGA-AL-3468-01A
0 years, male, white, stage:Stage II, dead, 2331 days
14.1
TCGA-HE-A5NI-01A
0 years, male, stage:Stage I, alive, 360 days
14.0
TCGA-UZ-A9Q1-01A
0 years, female, white, stage:Stage I, alive, 730 days
13.8
TCGA-2Z-A9J2-01A
0 years, female, white, stage:Stage I, alive, 1795 days
13.6
TCGA-B9-A8YI-01A
0 years, male, black or african american, stage:Stage I, alive, 374 days
13.6
TCGA-BQ-5880-01A
0 years, male, white, stage:Stage III, dead, 1314 days
13.6
TCGA-2Z-A9JO-01A
0 years, female, black or african american, stage:Stage I, alive, 949 days
13.2
TCGA-5P-A9JW-01A
0 years, male, white, stage:'--, alive, 3241 days
13.0
TCGA-B1-A656-01A
0 years, male, white, stage:Stage I, alive, 618 days
13.0
TCGA-DW-7838-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.0
TCGA-P4-AAVM-01A
0 years, male, white, stage:Stage I, alive, 1539 days
12.8
TCGA-IA-A83S-01A
0 years, male, white, stage:'--, dead, 2609 days
12.5
TCGA-Q2-A5QZ-01A
0 years, female, black or african american, stage:Stage III, alive, 428 days
12.5
TCGA-AL-3473-01A
0 years, male, white, stage:Stage II, alive, 1906 days
12.2
TCGA-5P-A9K3-01A
0 years, male, white, stage:'--, dead, 471 days
12.1
TCGA-2Z-A9JT-01A
0 years, male, white, stage:Stage I, alive, 684 days
12.1
TCGA-B3-4103-01A
0 years, male, white, stage:Stage I, alive, 930 days
11.8
TCGA-AL-3471-01A
0 years, male, white, stage:Stage I, dead, 1500 days
11.2
TCGA-IZ-8195-01A
0 years, male, white, stage:Stage II, alive, 677 days
11.1
TCGA-2Z-A9JQ-01A
0 years, male, white, stage:Stage I, alive, 778 days
10.9
TCGA-A4-8518-01A
0 years, male, white, stage:Stage I, alive, 600 days
10.5
TCGA-B9-4617-01A
0 years, male, black or african american, stage:'--, alive, 35 days
10.4
TCGA-UZ-A9Q0-01A
0 years, male, white, stage:Stage I, alive, 3368 days
10.4
TCGA-BQ-7058-01A
0 years, male, white, stage:Stage III, dead, 343 days
10.2
TCGA-MH-A560-01A
0 years, male, white, stage:Stage I, alive, 924 days
9.8
TCGA-BQ-7048-01A
0 years, male, white, stage:Stage III, alive, 2839 days
9.4
TCGA-BQ-5886-01A
0 years, male, white, stage:Stage III, alive, 792 days
9.0
TCGA-WN-AB4C-01A
0 years, female, white, stage:Stage I, alive, 1188 days
8.5
TCGA-B9-4115-01A
0 years, male, black or african american, stage:Stage I, alive, 803 days
8.1
TCGA-AL-3466-01A
0 years, male, white, stage:Stage IV, dead, 293 days
8.0
TCGA-B9-4114-01A
0 years, male, black or african american, stage:'--, alive, 857 days
7.8
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RENAL CELL CARCINOMA - Protein relative expression (CPTAC)
Number of samples
194
Samples
Sample ID
Sample type
nRPX
CPT0088550004
Tumor
0.8
CPT0012180003
Tumor
0.7
CPT0001260009
Tumor
0.6
CPT0014450004
Tumor
0.6
CPT0092190003
Normal
0.5
CPT0085670003
Tumor
0.5
CPT0000780007
Tumor
0.5
CPT0088630003
Tumor
0.5
CPT0025580004
Tumor
0.5
CPT0075720003
Tumor
0.5
CPT0077490003
Tumor
0.5
CPT0079380003
Tumor
0.4
CPT0075560003
Tumor
0.4
CPT0006440003
Tumor
0.4
CPT0012080003
Tumor
0.4
CPT0001340003
Tumor
0.4
CPT0026410003
Tumor
0.4
CPT0081600003
Tumor
0.4
CPT0084560003
Tumor
0.4
CPT0092730003
Tumor
0.4
CPT0006900003
Tumor
0.4
CPT0071150004
Tumor
0.4
CPT0088900003
Tumor
0.4
CPT0000870016
Tumor
0.4
CPT0014370004
Tumor
0.4
CPT0086360003
Tumor
0.4
CPT0086820003
Tumor
0.3
CPT0001540009
Tumor
0.3
CPT0001180009
Tumor
0.3
CPT0023690003
Tumor
0.3
CPT0092790003
Tumor
0.3
CPT0065870003
Tumor
0.3
CPT0065810003
Tumor
0.3
CPT0000640003
Tumor
0.3
CPT0025880003
Tumor
0.3
CPT0025350003
Tumor
0.3
CPT0092160003
Tumor
0.3
CPT0010160003
Tumor
0.3
CPT0025110003
Tumor
0.3
CPT0010110003
Tumor
0.3
CPT0075130003
Tumor
0.3
CPT0065430003
Tumor
0.3
CPT0088970003
Tumor
0.3
CPT0006630003
Tumor
0.3
CPT0079410003
Tumor
0.3
CPT0086870003
Tumor
0.3
CPT0084590001
Normal
0.3
CPT0079300001
Normal
0.3
CPT0089460004
Tumor
0.3
CPT0065690003
Tumor
0.2
CPT0078660003
Tumor
0.2
CPT0001500009
Tumor
0.2
CPT0001270001
Normal
0.2
CPT0012370003
Tumor
0.2
CPT0079270003
Tumor
0.2
CPT0025230003
Tumor
0.2
CPT0015810003
Tumor
0.2
CPT0025290003
Tumor
0.2
CPT0012640003
Normal
0.2
CPT0015910003
Tumor
0.2
CPT0009060003
Tumor
0.2
CPT0078930003
Tumor
0.2
CPT0075170001
Normal
0.2
CPT0012280003
Tumor
0.2
CPT0017850003
Tumor
0.2
CPT0017410003
Tumor
0.2
CPT0063320003
Tumor
0.2
CPT0063630003
Tumor
0.2
CPT0024670003
Tumor
0.1
CPT0012670003
Tumor
0.1
CPT0081990003
Tumor
0.1
CPT0088760003
Tumor
0.1
CPT0077110003
Tumor
0.1
CPT0001220008
Tumor
0.1
CPT0019130003
Tumor
0.1
CPT0089020003
Tumor
0.1
CPT0086830003
Normal
0.1
CPT0007320003
Tumor
0.1
CPT0078990003
Tumor
0.1
CPT0007470001
Normal
0.1
CPT0078530001
Normal
0.1
CPT0066470004
Tumor
0.1
CPT0079230003
Tumor
0.1
CPT0001550001
Normal
0.1
CPT0087040003
Tumor
0.1
CPT0079480003
Tumor
0.1
CPT0088690003
Tumor
0.1
CPT0077320001
Normal
0.1
CPT0007860003
Tumor
0.1
CPT0002350011
Tumor
0.1
CPT0001230001
Normal
0.1
CPT0064370003
Tumor
0.1
CPT0069010001
Normal
0.1
CPT0007870001
Normal
0.1
CPT0020120003
Tumor
0.1
CPT0079180003
Tumor
0.1
CPT0019160001
Normal
0.1
CPT0076330003
Tumor
0.1
CPT0015730003
Tumor
0.1
CPT0066480003
Tumor
0.1
CPT0014470001
Normal
0.0
CPT0000660001
Normal
0.0
CPT0025050003
Tumor
0.0
CPT0023350003
Tumor
0.0
CPT0086890003
Normal
0.0
CPT0010120001
Normal
0.0
CPT0092290003
Tumor
0.0
CPT0086030003
Tumor
0.0
CPT0078830003
Tumor
0.0
CPT0025170003
Tumor
0.0
CPT0088570001
Normal
0.0
CPT0078670001
Normal
0.0
CPT0002370001
Normal
0.0
CPT0081880003
Tumor
0.0
CPT0088640003
Normal
0.0
CPT0014160003
Tumor
0.0
CPT0006530001
Normal
0.0
CPT0001190001
Normal
0.0
CPT0088500001
Normal
0.0
CPT0086370003
Normal
0.0
CPT0063330001
Normal
0.0
CPT0075570001
Normal
-0.1
CPT0079000001
Normal
-0.1
CPT0065820001
Normal
-0.1
CPT0012550003
Tumor
-0.1
CPT0076350001
Normal
-0.1
CPT0064400001
Normal
-0.1
CPT0025920001
Normal
-0.1
CPT0000890001
Normal
-0.1
CPT0020020001
Normal
-0.1
CPT0024680001
Normal
-0.1
CPT0025610001
Normal
-0.1
CPT0001510001
Normal
-0.1
CPT0089040001
Normal
-0.1
CPT0086970003
Normal
-0.1
CPT0077310003
Tumor
-0.1
CPT0088780001
Normal
-0.1
CPT0063640001
Normal
-0.1
CPT0001350001
Normal
-0.1
CPT0089480003
Normal
-0.1
CPT0078940001
Normal
-0.1
CPT0009080003
Normal
-0.1
CPT0069190001
Normal
-0.1
CPT0078840001
Normal
-0.1
CPT0081620001
Normal
-0.1
CPT0065930003
Tumor
-0.1
CPT0012900004
Tumor
-0.1
CPT0086950003
Tumor
-0.1
CPT0014130001
Normal
-0.1
CPT0088710001
Normal
-0.2
CPT0078510003
Tumor
-0.2
CPT0088480003
Tumor
-0.2
CPT0014350001
Normal
-0.2
CPT0078800003
Tumor
-0.2
CPT0079510001
Normal
-0.2
CPT0066430001
Normal
-0.2
CPT0077500001
Normal
-0.2
CPT0069000003
Tumor
-0.2
CPT0065750003
Tumor
-0.2
CPT0012570003
Normal
-0.2
CPT0066520001
Normal
-0.2
CPT0092310003
Normal
-0.2
CPT0006950001
Normal
-0.2
CPT0019990003
Tumor
-0.2
CPT0020130001
Normal
-0.2
CPT0092800003
Normal
-0.2
CPT0079430001
Normal
-0.2
CPT0023710001
Normal
-0.2
CPT0011240003
Tumor
-0.2
CPT0010170001
Normal
-0.2
CPT0087050003
Normal
-0.2
CPT0077140001
Normal
-0.2
CPT0088920001
Normal
-0.2
CPT0092740003
Normal
-0.2
CPT0013790003
Normal
-0.3
CPT0023360001
Normal
-0.3
CPT0011410003
Tumor
-0.3
CPT0012770003
Normal
-0.3
CPT0012290003
Normal
-0.3
CPT0006730001
Normal
-0.3
CPT0069160003
Tumor
-0.3
CPT0000790001
Normal
-0.3
CPT0012090003
Normal
-0.3
CPT0025060001
Normal
-0.3
CPT0012920003
Normal
-0.3
CPT0082010001
Normal
-0.3
CPT0018250001
Normal
-0.3
CPT0002270011
Tumor
-0.3
CPT0021240003
Tumor
-0.4
CPT0009020003
Normal
-0.4
CPT0065450001
Normal
-0.4
CPT0017450001
Normal
-0.4
CPT0026420001
Normal
-0.4
CPT0009000003
Tumor
-0.4
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RENAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
