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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCAF1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
55.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
54.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
47.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
42.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
42.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
41.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
40.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
39.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
36.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
36.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
36.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
36.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
36.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
36.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
35.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
35.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
34.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
34.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
34.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
34.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
33.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
33.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
32.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
32.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
32.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
32.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
32.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
30.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
29.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
29.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
28.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
28.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
28.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
27.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
27.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
27.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
27.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
25.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
25.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
25.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
24.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
24.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
24.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
23.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
23.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
23.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
23.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
23.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
22.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
21.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
21.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
21.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
20.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
19.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
18.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
17.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
17.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
15.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCAF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.6
Number of samples
231
Samples
Sample
Description
TPM
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
28.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
18.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
523
Tumor
1.1
385
Tumor
0.8
965
Tumor
0.8
685
Tumor
0.7
425
Tumor
0.7
431
Tumor
0.7
661
Tumor
0.7
497
Tumor
0.7
635
Tumor
0.7
957
Tumor
0.7
211
Tumor
0.7
865
Tumor
0.7
517
Tumor
0.7
567
Tumor
0.7
123
Tumor
0.6
977
Tumor
0.6
341
Tumor
0.6
161
Tumor
0.6
785
Tumor
0.6
131
Tumor
0.6
393
Tumor
0.6
737
Tumor
0.5
983
Tumor
0.5
715
Tumor
0.5
937
Tumor
0.5
695
Tumor
0.5
647
Tumor
0.5
1031
Tumor
0.5
921
Tumor
0.5
473
Tumor
0.5
881
Tumor
0.5
445
Tumor
0.4
443
Tumor
0.4
463
Tumor
0.4
641
Tumor
0.4
331
Tumor
0.4
387
Tumor
0.4
487
Tumor
0.4
395
Tumor
0.4
743
Tumor
0.4
285
Tumor
0.4
975
Tumor
0.4
351
Tumor
0.4
483
Tumor
0.4
455
Tumor
0.4
411
Tumor
0.4
815
Tumor
0.4
231
Tumor
0.4
1021
Tumor
0.4
213
Tumor
0.4
221
Tumor
0.4
533
Tumor
0.4
1013
Tumor
0.4
141
Tumor
0.3
277
Tumor
0.3
313
Tumor
0.3
112
Tumor
0.3
923
Tumor
0.3
1041
Tumor
0.3
867
Tumor
0.3
493
Tumor
0.3
943
Tumor
0.3
917
Tumor
0.3
357
Tumor
0.3
863
Tumor
0.3
727
Tumor
0.3
135
Tumor
0.3
467
Tumor
0.3
413
Tumor
0.3
813
Tumor
0.3
297
Tumor
0.3
433
Tumor
0.3
536
Normal
0.3
171
Tumor
0.3
535
Tumor
0.2
755
Tumor
0.2
925
Tumor
0.2
477
Tumor
0.2
967
Tumor
0.2
861
Tumor
0.2
187
Tumor
0.2
823
Tumor
0.2
383
Tumor
0.2
498
Normal
0.2
537
Tumor
0.2
877
Tumor
0.2
554
Normal
0.2
741
Tumor
0.2
615
Tumor
0.2
665
Tumor
0.2
963
Tumor
0.2
311
Tumor
0.2
515
Tumor
0.2
481
Tumor
0.2
953
Tumor
0.2
355
Tumor
0.2
513
Tumor
0.2
447
Tumor
0.2
913
Tumor
0.2
572
Normal
0.2
553
Tumor
0.2
724
Normal
0.2
777
Tumor
0.2
814
Normal
0.2
534
Normal
0.2
883
Tumor
0.2
391
Tumor
0.2
343
Tumor
0.1
421
Tumor
0.1
492
Normal
0.1
217
Tumor
0.1
427
Tumor
0.1
484
Normal
0.1
471
Tumor
0.1
127
Tumor
0.1
857
Tumor
0.1
478
Normal
0.1
267
Tumor
0.1
491
Tumor
0.1
915
Tumor
0.1
451
Tumor
0.1
545
Tumor
0.1
283
Tumor
0.1
817
Tumor
0.1
286
Normal
0.1
145
Tumor
0.1
375
Tumor
0.1
916
Normal
0.1
671
Tumor
0.1
911
Tumor
0.1
361
Tumor
0.1
271
Tumor
0.1
851
Tumor
0.1
1025
Tumor
0.1
435
Tumor
0.1
563
Tumor
0.1
525
Tumor
0.1
261
Tumor
0.1
745
Tumor
0.1
663
Tumor
0.1
538
Normal
0.1
461
Tumor
0.1
465
Tumor
0.1
568
Normal
0.1
191
Tumor
0.1
365
Tumor
0.1
363
Tumor
0.1
472
Normal
0.1
353
Tumor
0.1
873
Tumor
0.1
113
Tumor
0.1
1015
Tumor
0.1
416
Normal
0.1
546
Normal
0.1
146
Normal
0.1
697
Tumor
0.0
138
Normal
0.0
327
Tumor
0.0
415
Tumor
0.0
284
Normal
0.0
257
Tumor
0.0
132
Normal
0.0
564
Normal
0.0
328
Normal
0.0
137
Tumor
0.0
744
Normal
0.0
386
Normal
0.0
1027
Tumor
0.0
527
Tumor
0.0
574
Normal
0.0
558
Normal
0.0
528
Normal
0.0
488
Normal
0.0
858
Normal
0.0
557
Tumor
0.0
188
Normal
0.0
571
Tumor
0.0
966
Normal
0.0
494
Normal
0.0
474
Normal
0.0
981
Tumor
0.0
716
Normal
0.0
412
Normal
0.0
367
Tumor
0.0
185
Tumor
0.0
955
Tumor
0.0
1045
Tumor
0.0
466
Normal
0.0
954
Normal
0.0
573
Tumor
0.0
362
Normal
0.0
352
Normal
0.0
786
Normal
0.0
192
Normal
0.0
627
Tumor
0.0
268
Normal
0.0
228
Normal
0.0
721
Tumor
0.0
926
Normal
0.0
628
Normal
0.0
212
Normal
0.0
434
Normal
0.0
364
Normal
-0.1
423
Tumor
-0.1
874
Normal
-0.1
456
Normal
-0.1
312
Normal
-0.1
852
Normal
-0.1
396
Normal
-0.1
728
Normal
-0.1
866
Normal
-0.1
818
Normal
-0.1
714
Normal
-0.1
924
Normal
-0.1
195
Tumor
-0.1
746
Normal
-0.1
444
Normal
-0.1
125
Tumor
-0.1
344
Normal
-0.1
428
Normal
-0.1
662
Normal
-0.1
1028
Normal
-0.1
1043
Tumor
-0.1
136
Normal
-0.1
864
Normal
-0.1
686
Normal
-0.1
882
Normal
-0.1
366
Normal
-0.1
984
Normal
-0.1
964
Normal
-0.1
742
Normal
-0.1
142
Normal
-0.1
524
Normal
-0.1
468
Normal
-0.1
672
Normal
-0.1
922
Normal
-0.1
424
Normal
-0.1
664
Normal
-0.1
968
Normal
-0.1
918
Normal
-0.1
617
Tumor
-0.1
816
Normal
-0.1
516
Normal
-0.1
218
Normal
-0.1
696
Normal
-0.1
462
Normal
-0.1
738
Normal
-0.1
452
Normal
-0.1
862
Normal
-0.1
878
Normal
-0.1
884
Normal
-0.1
114
Normal
-0.1
912
Normal
-0.1
756
Normal
-0.1
648
Normal
-0.1
1042
Normal
-0.1
976
Normal
-0.1
126
Normal
-0.2
666
Normal
-0.2
258
Normal
-0.2
262
Normal
-0.2
698
Normal
-0.2
464
Normal
-0.2
384
Normal
-0.2
636
Normal
-0.2
446
Normal
-0.2
1044
Normal
-0.2
272
Normal
-0.2
616
Normal
-0.2
223
Tumor
-0.2
824
Normal
-0.2
224
Normal
-0.2
436
Normal
-0.2
482
Normal
-0.2
958
Normal
-0.2
978
Normal
-0.2
982
Normal
-0.2
426
Normal
-0.2
723
Tumor
-0.2
227
Tumor
-0.2
298
Normal
-0.2
1014
Normal
-0.2
432
Normal
-0.2
356
Normal
-0.2
232
Normal
-0.2
778
Normal
-0.2
514
Normal
-0.2
518
Normal
-0.2
448
Normal
-0.2
1046
Normal
-0.2
148
Normal
-0.2
147
Tumor
-0.2
376
Normal
-0.2
124
Normal
-0.2
392
Normal
-0.2
414
Normal
-0.3
952
Normal
-0.3
162
Normal
-0.3
222
Normal
-0.3
642
Normal
-0.3
951
Tumor
-0.3
354
Normal
-0.3
1016
Normal
-0.3
186
Normal
-0.3
1026
Normal
-0.3
111
Normal
-0.3
618
Normal
-0.3
314
Normal
-0.3
868
Normal
-0.3
278
Normal
-0.3
342
Normal
-0.3
422
Normal
-0.3
944
Normal
-0.3
358
Normal
-0.3
172
Normal
-0.3
956
Normal
-0.3
394
Normal
-0.3
914
Normal
-0.3
368
Normal
-0.3
1022
Normal
-0.3
214
Normal
-0.3
388
Normal
-0.3
1032
Normal
-0.3
196
Normal
-0.3
938
Normal
-0.3
713
Tumor
-0.4
526
Normal
-0.4
722
Normal
-0.4
332
Normal
-0.4
128
Normal
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
