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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COX6B1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
704.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6045.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3257.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2909.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2473.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2346.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1907.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1894.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1845.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1793.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1699.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1653.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1619.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1604.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1565.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1555.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1530.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1489.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1449.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1410.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1385.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1371.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1362.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1326.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1277.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1250.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1231.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1226.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1222.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1216.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1165.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1156.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1151.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1142.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1141.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1138.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1118.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1117.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1086.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1078.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1075.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1056.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1043.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1035.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1027.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1026.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1020.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1016.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1011.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1003.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
997.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
987.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
985.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
984.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
980.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
977.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
976.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
967.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
961.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
959.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
936.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
928.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
917.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
897.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
897.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
896.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
895.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
895.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
893.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
891.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
885.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
879.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
876.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
872.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
868.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
861.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
859.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
848.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
848.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
848.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
847.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
843.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
842.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
835.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
827.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
815.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
815.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
805.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
803.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
801.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
788.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
785.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
784.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
783.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
776.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
775.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
774.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
774.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
774.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
772.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
771.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
765.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
764.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
762.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
758.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
757.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
757.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
756.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
753.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
752.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
746.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
739.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
737.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
735.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
734.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
731.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
722.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
720.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
720.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
718.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
717.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
714.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
710.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
708.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
707.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
707.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
706.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
706.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
701.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
699.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
698.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
695.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
688.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
686.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
685.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
685.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
679.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
674.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
672.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
670.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
670.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
669.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
663.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
661.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
653.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
652.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
652.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
650.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
648.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
644.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
644.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
644.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
643.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
643.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
643.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
642.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
642.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
639.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
637.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
636.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
635.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
634.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
633.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
633.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
633.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
630.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
626.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
625.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
625.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
615.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
614.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
610.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
608.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
606.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
606.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
603.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
602.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
601.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
600.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
600.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
600.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
600.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
595.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
595.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
595.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
589.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
589.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
588.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
585.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
582.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
582.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
581.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
578.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
576.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
575.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
575.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
575.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
573.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
571.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
571.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
568.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
567.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
566.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
565.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
564.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
561.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
559.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
555.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
553.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
552.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
550.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
549.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
549.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
548.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
547.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
543.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
543.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
541.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
535.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
534.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
533.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
522.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
522.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
521.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
521.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
517.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
516.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
515.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
513.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
512.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
511.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
509.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
507.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
506.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
506.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
505.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
502.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
501.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
501.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
499.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
499.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
498.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
498.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
497.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
495.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
495.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
494.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
493.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
493.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
492.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
491.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
490.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
490.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
490.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
488.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
487.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
487.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
484.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
482.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
481.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
480.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
477.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
476.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
474.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
474.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
470.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
466.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
464.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
463.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
463.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
462.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
459.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
459.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
457.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
454.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
454.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
452.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
451.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
450.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
445.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
444.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
444.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
443.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
443.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
443.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
442.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
438.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
438.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
436.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
434.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
429.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
426.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
424.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
424.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
423.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
421.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
419.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
417.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
416.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
416.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
412.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
411.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
411.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
409.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
409.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
406.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
406.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
404.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
403.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
402.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
398.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
397.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
396.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
395.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
395.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
393.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
392.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
391.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
385.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
385.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
380.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
379.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
375.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
374.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
373.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
373.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
371.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
369.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
369.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
365.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
365.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
364.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
363.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
362.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
360.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
356.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
355.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
354.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
352.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
352.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
347.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
342.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
342.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
339.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
337.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
335.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
327.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
326.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
321.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
319.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
297.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
290.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
288.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
285.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
282.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
282.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
279.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
278.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
271.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
266.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
253.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
241.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COX6B1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
350.6
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1232.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
975.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
930.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
915.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
888.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
831.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
770.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
754.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
747.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
732.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
709.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
704.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
691.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
675.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
670.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
661.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
660.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
650.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
627.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
604.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
585.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
580.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
570.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
569.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
569.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
565.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
564.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
544.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
538.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
538.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
513.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
501.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
501.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
500.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
499.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
496.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
496.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
486.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
477.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
476.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
461.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
459.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
457.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
457.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
450.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
449.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
448.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
444.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
441.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
439.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
439.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
438.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
435.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
428.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
426.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
422.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
414.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
413.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
412.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
404.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
403.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
400.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
400.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
398.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
395.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
389.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
384.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
382.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
381.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
380.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
378.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
377.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
376.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
375.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
375.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
373.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
373.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
367.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
366.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
365.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
362.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
359.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
357.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
357.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
356.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
356.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
354.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
354.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
352.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
352.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
350.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
350.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
348.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
348.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
343.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
342.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
340.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
340.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
339.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
335.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
333.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
332.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
328.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
327.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
327.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
326.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
325.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
324.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
321.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
320.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
318.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
318.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
317.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
312.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
309.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
306.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
304.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
303.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
302.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
301.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
299.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
293.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
293.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
292.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
292.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
289.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
287.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
286.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
286.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
283.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
280.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
280.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
280.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
280.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
278.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
278.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
277.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
276.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
275.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
274.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
274.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
274.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
269.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
269.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
269.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
269.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
268.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
266.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
261.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
261.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
261.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
259.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
259.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
258.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
257.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
256.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
256.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
255.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
254.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
254.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
251.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
247.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
247.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
247.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
244.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
241.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
241.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
240.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
236.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
236.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
236.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
236.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
235.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
235.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
235.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
232.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
231.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
229.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
228.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
226.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
222.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
221.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
221.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
218.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
215.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
214.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
214.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
213.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
211.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
208.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
207.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
207.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
206.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
205.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
200.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
200.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
199.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
198.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
196.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
196.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
196.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
193.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
193.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
192.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
192.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
187.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
187.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
186.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
186.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
183.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
179.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
179.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
178.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
176.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
176.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
176.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
175.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
174.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
173.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
171.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
170.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
165.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
161.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
160.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
159.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
159.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
151.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
145.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
143.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
139.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
127.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
0.9
227
Tumor
0.7
1041
Tumor
0.7
231
Tumor
0.7
557
Tumor
0.7
745
Tumor
0.6
981
Tumor
0.6
128
Normal
0.5
914
Normal
0.5
698
Normal
0.5
411
Tumor
0.5
393
Tumor
0.4
484
Normal
0.4
571
Tumor
0.4
878
Normal
0.4
114
Normal
0.3
327
Tumor
0.3
867
Tumor
0.3
436
Normal
0.3
487
Tumor
0.3
448
Normal
0.3
416
Normal
0.3
412
Normal
0.3
816
Normal
0.3
171
Tumor
0.3
746
Normal
0.3
924
Normal
0.3
738
Normal
0.3
477
Tumor
0.3
261
Tumor
0.3
516
Normal
0.3
728
Normal
0.2
915
Tumor
0.2
911
Tumor
0.2
111
Normal
0.2
452
Normal
0.2
742
Normal
0.2
1028
Normal
0.2
342
Normal
0.2
642
Normal
0.2
554
Normal
0.2
356
Normal
0.2
696
Normal
0.2
518
Normal
0.2
1026
Normal
0.2
222
Normal
0.2
713
Tumor
0.2
344
Normal
0.2
1025
Tumor
0.2
214
Normal
0.2
1015
Tumor
0.2
396
Normal
0.2
864
Normal
0.2
952
Normal
0.2
328
Normal
0.2
956
Normal
0.2
132
Normal
0.2
744
Normal
0.1
862
Normal
0.1
534
Normal
0.1
722
Normal
0.1
228
Normal
0.1
874
Normal
0.1
136
Normal
0.1
474
Normal
0.1
392
Normal
0.1
955
Tumor
0.1
112
Tumor
0.1
1045
Tumor
0.1
553
Tumor
0.1
868
Normal
0.1
364
Normal
0.1
866
Normal
0.1
1016
Normal
0.1
546
Normal
0.1
488
Normal
0.1
918
Normal
0.1
824
Normal
0.1
434
Normal
0.1
388
Normal
0.1
922
Normal
0.1
982
Normal
0.1
124
Normal
0.1
366
Normal
0.1
462
Normal
0.1
172
Normal
0.1
944
Normal
0.1
741
Tumor
0.1
286
Normal
0.1
1013
Tumor
0.1
494
Normal
0.1
138
Normal
0.1
778
Normal
0.1
686
Normal
0.0
341
Tumor
0.0
258
Normal
0.0
423
Tumor
0.0
386
Normal
0.0
483
Tumor
0.0
1042
Normal
0.0
861
Tumor
0.0
472
Normal
0.0
526
Normal
0.0
858
Normal
0.0
1022
Normal
0.0
142
Normal
0.0
212
Normal
0.0
618
Normal
0.0
362
Normal
0.0
882
Normal
0.0
1032
Normal
0.0
823
Tumor
0.0
272
Normal
0.0
123
Tumor
0.0
685
Tumor
0.0
473
Tumor
0.0
223
Tumor
0.0
938
Normal
0.0
715
Tumor
0.0
162
Normal
0.0
865
Tumor
0.0
394
Normal
0.0
358
Normal
0.0
966
Normal
0.0
464
Normal
0.0
446
Normal
0.0
976
Normal
0.0
714
Normal
0.0
257
Tumor
-0.1
186
Normal
-0.1
525
Tumor
-0.1
196
Normal
-0.1
126
Normal
-0.1
926
Normal
-0.1
361
Tumor
-0.1
456
Normal
-0.1
148
Normal
-0.1
968
Normal
-0.1
278
Normal
-0.1
913
Tumor
-0.1
113
Tumor
-0.1
1014
Normal
-0.1
482
Normal
-0.1
432
Normal
-0.1
298
Normal
-0.1
368
Normal
-0.1
916
Normal
-0.1
218
Normal
-0.1
127
Tumor
-0.1
284
Normal
-0.1
224
Normal
-0.1
755
Tumor
-0.1
492
Normal
-0.1
451
Tumor
-0.1
267
Tumor
-0.1
465
Tumor
-0.1
964
Normal
-0.1
363
Tumor
-0.1
1031
Tumor
-0.1
635
Tumor
-0.1
137
Tumor
-0.1
376
Normal
-0.1
723
Tumor
-0.1
461
Tumor
-0.2
957
Tumor
-0.2
716
Normal
-0.2
357
Tumor
-0.2
538
Normal
-0.2
145
Tumor
-0.2
268
Normal
-0.2
697
Tumor
-0.2
912
Normal
-0.2
636
Normal
-0.2
498
Normal
-0.2
884
Normal
-0.2
188
Normal
-0.2
135
Tumor
-0.2
984
Normal
-0.2
232
Normal
-0.2
937
Tumor
-0.2
433
Tumor
-0.2
954
Normal
-0.2
785
Tumor
-0.2
426
Normal
-0.2
756
Normal
-0.2
285
Tumor
-0.2
953
Tumor
-0.2
977
Tumor
-0.2
262
Normal
-0.2
466
Normal
-0.2
161
Tumor
-0.2
185
Tumor
-0.2
354
Normal
-0.2
221
Tumor
-0.2
537
Tumor
-0.2
422
Normal
-0.2
524
Normal
-0.2
873
Tumor
-0.2
627
Tumor
-0.3
923
Tumor
-0.3
146
Normal
-0.3
958
Normal
-0.3
355
Tumor
-0.3
528
Normal
-0.3
141
Tumor
-0.3
852
Normal
-0.3
523
Tumor
-0.3
777
Tumor
-0.3
786
Normal
-0.3
125
Tumor
-0.3
431
Tumor
-0.3
312
Normal
-0.3
468
Normal
-0.3
387
Tumor
-0.3
435
Tumor
-0.3
481
Tumor
-0.3
277
Tumor
-0.3
564
Normal
-0.3
415
Tumor
-0.3
567
Tumor
-0.4
967
Tumor
-0.4
881
Tumor
-0.4
352
Normal
-0.4
813
Tumor
-0.4
147
Tumor
-0.4
491
Tumor
-0.4
533
Tumor
-0.4
857
Tumor
-0.4
217
Tumor
-0.4
975
Tumor
-0.4
271
Tumor
-0.4
818
Normal
-0.4
574
Normal
-0.4
628
Normal
-0.4
536
Normal
-0.4
515
Tumor
-0.4
513
Tumor
-0.4
1044
Normal
-0.4
493
Tumor
-0.4
428
Normal
-0.4
568
Normal
-0.4
463
Tumor
-0.4
424
Normal
-0.4
375
Tumor
-0.4
743
Tumor
-0.4
367
Tumor
-0.5
965
Tumor
-0.5
478
Normal
-0.5
662
Normal
-0.5
641
Tumor
-0.5
365
Tumor
-0.5
616
Normal
-0.5
951
Tumor
-0.5
617
Tumor
-0.5
883
Tumor
-0.5
395
Tumor
-0.5
963
Tumor
-0.5
721
Tumor
-0.5
514
Normal
-0.5
353
Tumor
-0.5
213
Tumor
-0.5
814
Normal
-0.5
414
Normal
-0.5
187
Tumor
-0.5
192
Normal
-0.5
737
Tumor
-0.5
647
Tumor
-0.5
447
Tumor
-0.5
1043
Tumor
-0.5
1046
Normal
-0.5
471
Tumor
-0.5
1021
Tumor
-0.5
978
Normal
-0.5
817
Tumor
-0.5
443
Tumor
-0.5
497
Tumor
-0.5
517
Tumor
-0.6
427
Tumor
-0.6
572
Normal
-0.6
444
Normal
-0.6
527
Tumor
-0.6
943
Tumor
-0.6
983
Tumor
-0.6
648
Normal
-0.6
1027
Tumor
-0.6
727
Tumor
-0.6
195
Tumor
-0.6
851
Tumor
-0.6
664
Normal
-0.6
467
Tumor
-0.6
314
Normal
-0.6
383
Tumor
-0.6
663
Tumor
-0.7
863
Tumor
-0.7
332
Normal
-0.7
211
Tumor
-0.7
385
Tumor
-0.7
558
Normal
-0.7
925
Tumor
-0.7
615
Tumor
-0.7
413
Tumor
-0.7
313
Tumor
-0.7
311
Tumor
-0.8
917
Tumor
-0.8
545
Tumor
-0.8
191
Tumor
-0.8
297
Tumor
-0.8
421
Tumor
-0.8
391
Tumor
-0.8
283
Tumor
-0.8
661
Tumor
-0.8
921
Tumor
-0.9
815
Tumor
-0.9
455
Tumor
-0.9
351
Tumor
-0.9
384
Normal
-0.9
573
Tumor
-0.9
131
Tumor
-0.9
877
Tumor
-0.9
343
Tumor
-0.9
672
Normal
-1.0
535
Tumor
-1.0
445
Tumor
-1.0
425
Tumor
-1.0
666
Normal
-1.0
724
Normal
-1.1
331
Tumor
-1.2
563
Tumor
-1.3
665
Tumor
-1.4
671
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.