MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.7 nTPM
HPA Brain:152.9 nTPM
GTEx:35.7 nTPM
FANTOM5:347.2 Scaled Tags Per Million
Pig:25.3 nTPM
Mouse:42.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 152.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 152.9
2219 Male, age 76, both hemispheres 203.2
2586 Male, age 75, left hemisphere 191.5
2019 Male, age 18, unknown 164.5
1833 Male, age 53, unknown 148.8
2411 Female, age 72, unknown 148.0
2666 Male, age 74, left hemisphere 147.5
2828 Female, age 72, unknown 142.3
1827 Male, age 72, unknown 136.4
1830 Male, age 51, unknown 131.7
1870 Female, age 42, unknown 115.0
Dorsal raphe nucleus
nTPM: 115.6
2750 Male, age 76, both hemispheres 137.1
2047 Male, age 72, unknown 135.5
1828 Male, age 53, unknown 114.5
2016 Female, age 72, unknown 105.2
2298 Female, age 72, unknown 85.8
Inferior colliculus
nTPM: 125.1
2849 Male, age 72, unknown 134.8
1848 Female, age 42, unknown 123.3
1890 Male, age 53, unknown 122.9
2097 Female, age 72, unknown 119.3
Median raphe nucleus
nTPM: 125.5
2220 Male, age 76, midline 125.5
Periaquaductal grey, anterior
nTPM: 126.2
2502 Female, age 75, unknown 143.5
1795 Male, age 51, unknown 129.2
1947 Male, age 18, unknown 106.1
Periaquaductal grey, dorsal
nTPM: 106.7
2464 Female, age 72, unknown 150.2
1831 Male, age 72, unknown 100.4
1840 Male, age 53, unknown 97.7
2850 Male, age 76, both hemispheres 78.3
Periaquaductal grey, lateral
nTPM: 107.9
2053 Male, age 18, unknown 119.1
2272 Male, age 74, both hemispheres 110.0
2140 Male, age 76, both hemispheres 94.4
Pretectal area
nTPM: 137.6
2007 Male, age 72, unknown 164.3
2407 Male, age 75, both hemispheres 163.9
1816 Male, age 51, unknown 162.4
1944 Female, age 72, unknown 154.9
1815 Male, age 53, unknown 146.9
1817 Female, age 42, unknown 142.5
2316 Male, age 76, right hemisphere 136.7
2667 Female, age 75, unknown 129.5
2825 Male, age 18, unknown 120.4
2224 Female, age 72, unknown 102.8
2273 Male, age 74, both hemispheres 89.1
Red nucleus
nTPM: 152.8
2584 Male, age 75, left hemisphere 208.3
2588 Male, age 74, left hemisphere 177.8
2785 Male, age 18, unknown 168.1
2823 Male, age 76, right hemisphere 166.7
1904 Male, age 53, unknown 165.9
2503 Female, age 72, unknown 160.6
2769 Male, age 72, unknown 153.6
2227 Male, age 72, unknown 150.6
1865 Male, age 51, unknown 142.4
1954 Female, age 42, unknown 122.3
2725 Female, age 75, unknown 110.1
1821 Female, age 72, unknown 107.7
Substantia nigra
nTPM: 137.4
2665 Male, age 74, both hemispheres 187.4
2583 Male, age 75, right hemisphere 159.8
1941 Male, age 53, unknown 144.5
1889 Female, age 72, unknown 135.6
1851 Male, age 51, unknown 128.8
2590 Female, age 75, unknown 127.5
2409 Female, age 72, unknown 125.4
2241 Male, age 72, unknown 122.1
2699 Male, age 18, unknown 122.1
1916 Female, age 42, unknown 120.7
Superior colliculus
nTPM: 139.6
2668 Female, age 75, unknown 183.0
2087 Female, age 72, unknown 165.1
2664 Male, age 75, both hemispheres 160.5
2261 Male, age 18, unknown 150.6
2587 Male, age 74, left hemisphere 132.3
1796 Male, age 53, unknown 129.7
1895 Male, age 76, right hemisphere 123.6
1839 Male, age 51, unknown 122.9
1913 Female, age 42, unknown 118.3
1995 Male, age 72, unknown 110.0
Ventral tegmental area
nTPM: 128.1
1942 Male, age 51, unknown 147.4
2410 Female, age 72, unknown 136.3
2223 Female, age 72, unknown 131.8
2218 Male, age 76, both hemispheres 128.3
2021 Male, age 53, unknown 115.8
1915 Female, age 42, unknown 108.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 35.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.7
Samples: 139

Max nTPM: 69.1
Min nTPM: 8.0
Std nTPM: 12.1
Median nTPM: 34.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 69.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 64.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 63.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 62.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 60.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 59.9
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 57.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 56.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 56.5
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 56.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 55.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 347.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 347.2
FF:10158-103A5 76 years, female 347.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 25.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.3
Samples: 4

Max nTPM: 22.5
Min nTPM: 16.2
Sample A Female 18.7
Sample B Female 16.2
Sample C Male 22.5
Sample D Male 19.9
Midbrain
nTPM: 25.3
Samples: 4

Max nTPM: 36.1
Min nTPM: 13.5
Sample A Female 13.5
Sample B Female 19.6
Sample C Male 36.1
Sample D Male 32.1
Periaqueductal gray
nTPM: 18.2
Samples: 3

Max nTPM: 21.2
Min nTPM: 16.7
Sample B Female 16.7
Sample C Male 21.2
Sample D Male 16.7
Superior colliculi
nTPM: 24.2
Samples: 4

Max nTPM: 29.0
Min nTPM: 17.4
Sample A Female 21.2
Sample B Female 17.4
Sample C Male 29.0
Sample D Male 29.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 42.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.3
Samples: 4

Max nTPM: 43.8
Min nTPM: 41.3
Sample A Male 42.6
Sample B Male 41.3
Sample C Female 41.3
Sample D Female 43.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71789807 Antisense, RP_050921_03_F07, Mouse strain C57BL/6J (56 days, male) 0.2

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