MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.8 nTPM
HPA Brain:51.6 nTPM
GTEx:57.8 nTPM
FANTOM5:46.8 Scaled Tags Per Million
Pig:67.2 nTPM
Mouse:3.3 nTPM
Allen mouse:5.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 51.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.2
2586 Male, age 75, left hemisphere 58.7
1827 Male, age 72, unknown 48.6
2411 Female, age 72, unknown 47.6
2019 Male, age 18, unknown 47.2
1870 Female, age 42, unknown 46.1
2828 Female, age 72, unknown 45.7
1833 Male, age 53, unknown 43.1
2666 Male, age 74, left hemisphere 42.1
2219 Male, age 76, both hemispheres 41.8
1830 Male, age 51, unknown 41.2
Dorsal raphe nucleus
nTPM: 47.0
2298 Female, age 72, unknown 53.7
2047 Male, age 72, unknown 48.3
1828 Male, age 53, unknown 45.9
2750 Male, age 76, both hemispheres 45.4
2016 Female, age 72, unknown 41.9
Inferior colliculus
nTPM: 47.2
2849 Male, age 72, unknown 50.6
2097 Female, age 72, unknown 49.2
1848 Female, age 42, unknown 45.5
1890 Male, age 53, unknown 43.5
Median raphe nucleus
nTPM: 49.5
2220 Male, age 76, midline 49.5
Periaquaductal grey, anterior
nTPM: 51.6
1795 Male, age 51, unknown 53.0
2502 Female, age 75, unknown 50.9
1947 Male, age 18, unknown 50.8
Periaquaductal grey, dorsal
nTPM: 45.5
1840 Male, age 53, unknown 50.4
2850 Male, age 76, both hemispheres 46.7
2464 Female, age 72, unknown 43.4
1831 Male, age 72, unknown 41.5
Periaquaductal grey, lateral
nTPM: 44.1
2272 Male, age 74, both hemispheres 48.5
2140 Male, age 76, both hemispheres 46.7
2053 Male, age 18, unknown 37.2
Pretectal area
nTPM: 47.0
2007 Male, age 72, unknown 53.3
1817 Female, age 42, unknown 51.3
1816 Male, age 51, unknown 49.7
2224 Female, age 72, unknown 48.2
1944 Female, age 72, unknown 47.2
2273 Male, age 74, both hemispheres 46.3
2825 Male, age 18, unknown 46.2
1815 Male, age 53, unknown 44.6
2667 Female, age 75, unknown 44.6
2407 Male, age 75, both hemispheres 44.0
2316 Male, age 76, right hemisphere 41.5
Red nucleus
nTPM: 45.3
2725 Female, age 75, unknown 51.6
2503 Female, age 72, unknown 49.5
2785 Male, age 18, unknown 48.4
2227 Male, age 72, unknown 46.5
2584 Male, age 75, left hemisphere 46.3
2588 Male, age 74, left hemisphere 46.0
2769 Male, age 72, unknown 45.2
1904 Male, age 53, unknown 43.7
1821 Female, age 72, unknown 42.9
1865 Male, age 51, unknown 42.3
1954 Female, age 42, unknown 41.7
2823 Male, age 76, right hemisphere 39.6
Substantia nigra
nTPM: 42.4
1889 Female, age 72, unknown 50.0
1941 Male, age 53, unknown 48.6
1916 Female, age 42, unknown 47.8
1851 Male, age 51, unknown 45.5
2583 Male, age 75, right hemisphere 42.9
2699 Male, age 18, unknown 42.2
2665 Male, age 74, both hemispheres 38.8
2590 Female, age 75, unknown 38.7
2241 Male, age 72, unknown 37.3
2409 Female, age 72, unknown 32.3
Superior colliculus
nTPM: 44.5
2261 Male, age 18, unknown 48.8
1796 Male, age 53, unknown 48.1
2087 Female, age 72, unknown 47.0
1895 Male, age 76, right hemisphere 46.4
2668 Female, age 75, unknown 45.0
1839 Male, age 51, unknown 44.8
1913 Female, age 42, unknown 43.1
2664 Male, age 75, both hemispheres 42.0
1995 Male, age 72, unknown 39.9
2587 Male, age 74, left hemisphere 39.7
Ventral tegmental area
nTPM: 43.4
1915 Female, age 42, unknown 47.4
2218 Male, age 76, both hemispheres 46.6
2410 Female, age 72, unknown 43.7
1942 Male, age 51, unknown 43.3
2021 Male, age 53, unknown 39.8
2223 Female, age 72, unknown 39.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 57.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.8
Samples: 139

Max nTPM: 94.9
Min nTPM: 29.1
Std nTPM: 11.9
Median nTPM: 56.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 94.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 89.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 86.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 85.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 80.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 77.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 76.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 76.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 75.5
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 74.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 73.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 46.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.8
FF:10158-103A5 76 years, female 46.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 67.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 67.2
Samples: 4

Max nTPM: 87.9
Min nTPM: 51.6
Sample A Female 87.9
Sample B Female 61.5
Sample C Male 67.8
Sample D Male 51.6
Midbrain
nTPM: 64.1
Samples: 4

Max nTPM: 74.0
Min nTPM: 54.6
Sample A Female 74.0
Sample B Female 72.1
Sample C Male 54.6
Sample D Male 55.7
Periaqueductal gray
nTPM: 67.1
Samples: 3

Max nTPM: 76.9
Min nTPM: 54.8
Sample B Female 69.7
Sample C Male 76.9
Sample D Male 54.8
Superior colliculi
nTPM: 61.0
Samples: 4

Max nTPM: 81.9
Min nTPM: 52.1
Sample A Female 81.9
Sample B Female 52.1
Sample C Male 54.4
Sample D Male 55.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.3
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.9
Sample A Male 3.9
Sample B Male 2.9
Sample C Female 3.2
Sample D Female 3.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.3
69113841 Antisense, RP_050316_02_H06, Mouse strain C57BL/6J (56 days, male) 5.3

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