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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ITPA is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
151.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
134.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
129.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
123.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
116.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
102.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
100.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
99.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
92.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
88.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
85.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
85.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
84.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
83.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
83.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
83.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
82.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
81.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
76.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
75.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
74.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
72.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
71.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
71.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
70.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
70.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
69.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
65.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
64.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
64.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
63.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
63.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
63.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
63.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
62.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
61.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
61.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
61.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
60.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
60.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
59.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
59.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
59.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
59.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
59.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
58.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
57.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
56.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
56.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
56.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
56.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
55.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
55.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
55.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
55.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
55.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
55.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
54.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
54.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
52.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
52.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
52.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
52.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
52.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
51.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
51.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
51.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
50.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
50.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
50.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
49.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
49.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
49.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
48.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
48.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
47.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
47.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
47.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
47.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
47.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
46.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
46.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
45.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
45.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
45.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
45.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
44.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
44.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
44.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
44.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
44.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
43.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
43.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
43.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
43.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
43.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
43.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
43.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
43.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
43.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
42.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
42.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
42.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
41.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
41.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
41.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
41.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
41.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
41.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
41.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
41.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
40.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
40.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
40.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
40.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
40.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
40.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
40.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
40.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
40.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
40.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
40.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
39.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
39.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
39.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
39.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
39.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
39.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
38.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
38.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
38.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
38.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
38.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
38.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
38.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
38.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
37.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
37.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
37.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
37.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
37.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
37.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
37.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
37.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
37.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
37.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
37.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
37.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
37.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
37.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
37.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
36.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
36.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
36.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
36.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
36.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
36.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
36.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
36.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
35.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
35.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
35.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
35.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
35.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
35.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
35.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
35.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
35.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
35.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
35.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
34.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
34.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
34.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
34.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
34.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
34.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
34.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
34.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
33.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
33.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
33.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
33.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
33.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
33.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
32.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
32.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
32.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
32.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
32.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
32.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
32.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
32.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
31.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
31.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
31.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
31.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
31.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
31.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
30.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
30.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
30.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
30.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
30.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
30.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
30.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
30.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
30.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
30.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
30.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
30.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
30.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
30.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
30.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
29.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
29.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
29.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
29.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
29.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
29.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
29.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
29.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
28.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
28.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
28.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
28.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
28.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
28.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
28.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
28.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
28.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
28.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
28.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
28.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
27.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
27.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
27.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
27.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
27.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
27.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
27.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
26.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
26.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
26.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
26.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
25.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
25.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
25.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
25.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
25.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
25.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
25.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
25.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
25.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
25.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
24.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
24.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
24.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
24.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
23.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
23.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
21.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
21.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
21.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
21.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
20.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
18.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ITPA is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
34.0
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
103.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
101.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
92.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
83.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
80.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
79.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
77.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
77.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
74.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
71.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
71.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
70.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
69.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
68.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
66.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
64.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
64.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
62.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
61.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
60.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
60.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
58.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
58.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
57.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
57.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
57.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
56.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
55.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
55.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
54.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
51.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
51.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
50.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
50.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
49.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
49.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
47.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
47.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
47.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
47.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
46.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
46.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
46.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
46.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
46.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
46.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
45.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
45.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
44.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
44.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
44.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
43.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
42.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
42.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
42.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
42.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
42.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
42.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
41.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
41.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
41.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
41.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
41.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
41.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
41.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
40.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
39.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
39.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
39.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
39.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
39.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
38.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
38.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
38.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
38.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
38.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
37.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
37.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
37.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
36.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
36.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
36.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
35.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
34.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
34.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
34.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
34.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
34.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
34.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
34.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
33.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
33.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
33.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
33.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
33.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
33.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
33.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
32.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
32.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
32.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
32.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
32.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
32.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
32.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
32.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
31.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
31.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
31.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
31.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
31.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
30.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
30.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
30.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
29.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
29.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
29.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
28.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
28.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
28.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
27.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
27.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
26.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
26.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
26.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
26.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
26.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
26.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
25.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
24.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
24.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
24.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
23.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
22.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
22.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
22.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
18.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
815
Tumor
1.9
351
Tumor
1.3
1027
Tumor
1.1
925
Tumor
1.0
123
Tumor
1.0
635
Tumor
1.0
455
Tumor
0.9
661
Tumor
0.9
1021
Tumor
0.8
331
Tumor
0.8
411
Tumor
0.7
387
Tumor
0.7
983
Tumor
0.7
367
Tumor
0.6
537
Tumor
0.6
1041
Tumor
0.6
271
Tumor
0.6
571
Tumor
0.6
185
Tumor
0.6
727
Tumor
0.5
131
Tumor
0.5
391
Tumor
0.5
375
Tumor
0.5
567
Tumor
0.5
127
Tumor
0.5
491
Tumor
0.5
445
Tumor
0.4
421
Tumor
0.4
465
Tumor
0.3
431
Tumor
0.3
112
Tumor
0.3
663
Tumor
0.3
425
Tumor
0.3
213
Tumor
0.3
433
Tumor
0.3
427
Tumor
0.3
563
Tumor
0.3
297
Tumor
0.2
743
Tumor
0.2
951
Tumor
0.2
695
Tumor
0.2
685
Tumor
0.2
128
Normal
0.2
617
Tumor
0.2
413
Tumor
0.2
191
Tumor
0.2
967
Tumor
0.2
257
Tumor
0.2
267
Tumor
0.2
214
Normal
0.2
171
Tumor
0.2
231
Tumor
0.2
272
Normal
0.2
113
Tumor
0.2
463
Tumor
0.2
395
Tumor
0.1
737
Tumor
0.1
277
Tumor
0.1
313
Tumor
0.1
497
Tumor
0.1
434
Normal
0.1
132
Normal
0.1
186
Normal
0.1
383
Tumor
0.1
741
Tumor
0.1
161
Tumor
0.1
187
Tumor
0.1
392
Normal
0.1
221
Tumor
0.1
188
Normal
0.1
192
Normal
0.1
124
Normal
0.1
147
Tumor
0.1
525
Tumor
0.1
493
Tumor
0.0
394
Normal
0.0
114
Normal
0.0
125
Tumor
0.0
384
Normal
0.0
963
Tumor
0.0
311
Tumor
0.0
1028
Normal
0.0
755
Tumor
0.0
915
Tumor
0.0
388
Normal
0.0
111
Normal
0.0
777
Tumor
0.0
232
Normal
0.0
953
Tumor
0.0
126
Normal
0.0
217
Tumor
0.0
483
Tumor
-0.1
363
Tumor
-0.1
641
Tumor
-0.1
146
Normal
-0.1
492
Normal
-0.1
376
Normal
-0.1
258
Normal
-0.1
615
Tumor
-0.1
162
Normal
-0.1
456
Normal
-0.1
283
Tumor
-0.1
642
Normal
-0.1
573
Tumor
-0.1
357
Tumor
-0.1
965
Tumor
-0.1
342
Normal
-0.1
393
Tumor
-0.1
327
Tumor
-0.1
432
Normal
-0.1
881
Tumor
-0.1
517
Tumor
-0.1
312
Normal
-0.1
366
Normal
-0.1
1022
Normal
-0.1
914
Normal
-0.1
713
Tumor
-0.1
361
Tumor
-0.1
513
Tumor
-0.1
816
Normal
-0.1
353
Tumor
-0.1
211
Tumor
-0.1
343
Tumor
-0.1
921
Tumor
-0.1
568
Normal
-0.2
365
Tumor
-0.2
447
Tumor
-0.2
362
Normal
-0.2
298
Normal
-0.2
222
Normal
-0.2
145
Tumor
-0.2
332
Normal
-0.2
446
Normal
-0.2
354
Normal
-0.2
966
Normal
-0.2
662
Normal
-0.2
466
Normal
-0.2
911
Tumor
-0.2
952
Normal
-0.2
913
Tumor
-0.2
477
Tumor
-0.2
227
Tumor
-0.2
278
Normal
-0.2
883
Tumor
-0.2
864
Normal
-0.2
1042
Normal
-0.2
261
Tumor
-0.2
564
Normal
-0.2
428
Normal
-0.2
268
Normal
-0.2
618
Normal
-0.2
923
Tumor
-0.3
975
Tumor
-0.3
636
Normal
-0.3
412
Normal
-0.3
464
Normal
-0.3
665
Tumor
-0.3
912
Normal
-0.3
352
Normal
-0.3
148
Normal
-0.3
648
Normal
-0.3
355
Tumor
-0.3
943
Tumor
-0.3
423
Tumor
-0.3
426
Normal
-0.3
553
Tumor
-0.3
1031
Tumor
-0.3
738
Normal
-0.3
917
Tumor
-0.3
422
Normal
-0.3
538
Normal
-0.3
863
Tumor
-0.3
955
Tumor
-0.3
1045
Tumor
-0.3
861
Tumor
-0.3
924
Normal
-0.3
444
Normal
-0.4
817
Tumor
-0.4
976
Normal
-0.4
414
Normal
-0.4
135
Tumor
-0.4
851
Tumor
-0.4
436
Normal
-0.4
515
Tumor
-0.4
533
Tumor
-0.4
664
Normal
-0.4
518
Normal
-0.4
262
Normal
-0.4
574
Normal
-0.4
474
Normal
-0.4
452
Normal
-0.4
865
Tumor
-0.4
873
Tumor
-0.4
874
Normal
-0.4
1044
Normal
-0.4
451
Tumor
-0.4
728
Normal
-0.5
671
Tumor
-0.5
356
Normal
-0.5
666
Normal
-0.5
937
Tumor
-0.5
867
Tumor
-0.5
195
Tumor
-0.5
344
Normal
-0.5
535
Tumor
-0.5
1026
Normal
-0.5
1043
Tumor
-0.5
554
Normal
-0.5
824
Normal
-0.5
814
Normal
-0.5
138
Normal
-0.5
714
Normal
-0.5
813
Tumor
-0.5
778
Normal
-0.5
964
Normal
-0.5
647
Tumor
-0.5
368
Normal
-0.5
1032
Normal
-0.5
698
Normal
-0.5
616
Normal
-0.5
686
Normal
-0.5
572
Normal
-0.5
218
Normal
-0.5
545
Tumor
-0.6
1015
Tumor
-0.6
696
Normal
-0.6
823
Tumor
-0.6
724
Normal
-0.6
523
Tumor
-0.6
627
Tumor
-0.6
628
Normal
-0.6
196
Normal
-0.6
424
Normal
-0.6
956
Normal
-0.6
386
Normal
-0.6
968
Normal
-0.6
494
Normal
-0.6
954
Normal
-0.6
364
Normal
-0.6
866
Normal
-0.6
358
Normal
-0.6
314
Normal
-0.6
514
Normal
-0.6
448
Normal
-0.6
882
Normal
-0.7
697
Tumor
-0.7
498
Normal
-0.7
981
Tumor
-0.7
172
Normal
-0.7
468
Normal
-0.7
328
Normal
-0.7
744
Normal
-0.7
982
Normal
-0.7
396
Normal
-0.7
141
Tumor
-0.7
223
Tumor
-0.7
1046
Normal
-0.7
868
Normal
-0.7
916
Normal
-0.7
918
Normal
-0.7
385
Tumor
-0.7
672
Normal
-0.7
212
Normal
-0.7
478
Normal
-0.7
1016
Normal
-0.7
557
Tumor
-0.7
745
Tumor
-0.7
534
Normal
-0.7
435
Tumor
-0.7
526
Normal
-0.7
467
Tumor
-0.7
142
Normal
-0.7
852
Normal
-0.8
926
Normal
-0.8
938
Normal
-0.8
137
Tumor
-0.8
862
Normal
-0.8
461
Tumor
-0.8
516
Normal
-0.8
416
Normal
-0.8
136
Normal
-0.8
818
Normal
-0.8
1025
Tumor
-0.8
715
Tumor
-0.9
984
Normal
-0.9
341
Tumor
-0.9
228
Normal
-0.9
958
Normal
-0.9
415
Tumor
-0.9
944
Normal
-0.9
922
Normal
-0.9
224
Normal
-0.9
858
Normal
-1.0
284
Normal
-1.0
484
Normal
-1.0
473
Tumor
-1.0
877
Tumor
-1.0
756
Normal
-1.0
558
Normal
-1.0
742
Normal
-1.0
722
Normal
-1.0
857
Tumor
-1.0
524
Normal
-1.1
977
Tumor
-1.1
884
Normal
-1.1
482
Normal
-1.1
746
Normal
-1.1
488
Normal
-1.1
536
Normal
-1.2
978
Normal
-1.2
723
Tumor
-1.2
481
Tumor
-1.2
721
Tumor
-1.2
546
Normal
-1.2
443
Tumor
-1.2
716
Normal
-1.2
528
Normal
-1.3
462
Normal
-1.3
957
Tumor
-1.3
487
Tumor
-1.3
286
Normal
-1.8
471
Tumor
-1.8
285
Tumor
-1.9
527
Tumor
-2.0
878
Normal
-2.1
1014
Normal
-2.1
472
Normal
-2.1
1013
Tumor
-2.2
785
Tumor
-2.3
786
Normal
-2.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
