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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMF1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
48.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
158.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
139.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
126.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
118.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
109.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
104.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
102.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
98.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
97.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
97.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
94.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
92.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
92.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
86.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
86.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
85.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
83.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
79.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
79.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
79.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
78.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
78.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
77.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
77.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
77.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
77.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
76.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
74.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
74.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
74.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
74.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
74.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
73.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
73.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
73.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
72.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
72.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
72.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
72.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
72.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
71.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
71.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
70.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
70.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
70.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
70.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
69.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
69.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
68.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
68.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
68.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
68.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
67.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
67.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
67.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
67.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
67.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
66.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
65.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
65.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
65.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
64.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
64.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
64.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
64.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
63.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
63.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
63.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
63.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
63.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
63.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
62.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
62.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
62.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
62.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
62.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
62.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
62.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
62.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
62.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
61.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
61.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
60.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
60.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
60.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
60.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
60.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
59.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
59.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
59.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
59.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
59.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
58.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
58.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
57.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
57.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
57.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
56.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
56.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
56.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
56.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
56.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
56.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
56.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
56.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
56.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
56.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
56.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
55.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
55.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
55.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
55.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
55.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
55.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
55.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
55.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
54.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
54.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
54.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
54.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
54.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
54.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
53.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
53.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
53.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
53.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
53.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
53.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
53.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
53.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
53.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
52.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
52.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
52.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
52.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
52.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
51.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
51.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
51.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
51.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
51.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
51.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
51.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
51.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
51.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
51.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
51.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
50.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
50.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
50.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
50.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
50.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
50.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
49.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
49.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
49.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
49.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
49.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
49.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
49.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
48.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
48.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
48.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
48.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
48.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
48.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
48.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
48.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
47.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
47.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
47.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
47.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
46.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
46.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
46.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
46.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
46.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
46.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
46.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
46.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
45.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
45.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
45.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
45.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
45.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
45.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
45.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
45.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
45.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
44.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
44.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
44.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
44.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
44.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
44.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
44.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
44.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
44.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
44.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
43.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
43.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
43.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
43.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
43.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
43.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
43.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
43.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
43.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
42.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
42.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
42.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
42.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
42.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
42.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
42.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
42.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
42.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
42.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
41.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
41.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
41.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
41.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
41.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
41.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
41.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
41.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
40.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
40.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
40.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
40.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
40.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
40.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
40.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
40.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
40.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
39.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
39.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
39.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
39.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
39.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
39.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
38.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
38.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
38.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
38.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
37.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
37.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
37.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
37.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
37.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
37.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
37.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
36.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
36.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
36.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
36.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
36.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
36.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
36.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
36.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
36.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
35.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
35.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
35.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
35.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
35.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
35.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
35.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
35.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
35.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
35.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
35.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
35.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
35.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
34.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
34.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
34.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
34.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
34.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
33.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
33.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
33.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
33.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
33.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
33.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
33.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
33.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
32.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
32.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
32.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
32.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
32.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
32.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
31.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
31.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
31.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
31.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
31.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
31.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
31.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
31.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
31.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
31.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
30.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
29.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
29.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
29.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
28.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
27.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
27.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
27.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
26.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
26.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
26.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
26.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
25.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
25.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
25.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
25.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
25.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
25.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
24.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
24.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
24.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
23.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
23.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
23.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
22.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
20.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
20.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
19.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
19.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
18.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
18.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
17.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
17.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMF1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.5
Number of samples
231
Samples
Sample
Description
TPM
DO45217
0 years, female, NA, stage:3, dead, 270 days
77.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
66.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
65.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
64.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
64.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
62.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
62.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
62.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
61.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
61.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
59.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
59.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
58.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
58.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
57.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
56.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
56.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
55.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
55.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
54.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
53.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
53.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
53.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
53.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
53.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
53.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
52.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
52.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
51.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
50.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
50.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
50.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
49.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
49.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
48.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
47.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
46.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
46.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
45.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
45.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
45.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
45.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
44.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
44.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
44.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
44.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
44.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
44.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
44.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
43.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
43.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
43.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
43.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
43.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
43.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
42.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
42.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
42.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
42.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
42.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
42.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
42.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
41.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
41.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
41.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
41.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
40.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
40.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
40.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
40.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
40.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
40.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
40.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
40.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
39.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
39.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
39.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
39.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
39.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
39.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
39.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
39.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
39.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
39.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
38.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
38.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
38.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
38.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
38.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
38.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
37.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
37.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
37.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
37.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
37.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
37.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
37.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
36.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
36.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
36.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
36.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
36.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
36.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
36.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
35.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
35.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
35.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
35.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
35.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
34.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
34.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
34.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
34.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
34.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
34.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
34.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
34.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
34.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
34.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
34.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
34.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
34.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
33.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
33.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
33.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
33.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
33.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
33.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
33.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
32.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
32.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
32.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
32.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
32.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
32.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
32.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
31.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
31.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
31.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
31.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
31.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
31.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
30.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
30.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
30.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
30.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
30.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
30.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
30.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
30.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
30.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
30.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
29.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
29.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
29.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
29.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
29.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
29.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
29.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
29.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
29.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
28.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
28.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
28.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
28.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
28.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
27.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
27.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
27.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
27.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
27.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
27.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
26.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
26.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
26.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
26.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
26.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
26.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
26.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
26.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
26.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
25.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
25.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
25.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
24.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
23.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
22.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
815
Tumor
1.0
351
Tumor
1.0
123
Tumor
0.8
671
Tumor
0.6
513
Tumor
0.6
777
Tumor
0.5
455
Tumor
0.5
937
Tumor
0.4
445
Tumor
0.4
1027
Tumor
0.4
911
Tumor
0.4
981
Tumor
0.4
967
Tumor
0.4
331
Tumor
0.4
956
Normal
0.3
627
Tumor
0.3
863
Tumor
0.3
877
Tumor
0.3
745
Tumor
0.3
483
Tumor
0.3
391
Tumor
0.3
515
Tumor
0.3
387
Tumor
0.3
862
Normal
0.3
924
Normal
0.3
851
Tumor
0.3
816
Normal
0.3
277
Tumor
0.3
685
Tumor
0.3
171
Tumor
0.3
698
Normal
0.3
921
Tumor
0.3
411
Tumor
0.2
214
Normal
0.2
755
Tumor
0.2
964
Normal
0.2
267
Tumor
0.2
723
Tumor
0.2
616
Normal
0.2
884
Normal
0.2
785
Tumor
0.2
452
Normal
0.2
615
Tumor
0.2
286
Normal
0.2
883
Tumor
0.2
217
Tumor
0.2
642
Normal
0.2
222
Normal
0.2
365
Tumor
0.2
912
Normal
0.2
571
Tumor
0.2
618
Normal
0.2
665
Tumor
0.2
746
Normal
0.2
313
Tumor
0.2
228
Normal
0.2
213
Tumor
0.2
913
Tumor
0.2
342
Normal
0.2
477
Tumor
0.2
516
Normal
0.2
271
Tumor
0.2
938
Normal
0.2
976
Normal
0.2
261
Tumor
0.2
416
Normal
0.2
127
Tumor
0.2
955
Tumor
0.2
878
Normal
0.2
464
Normal
0.2
1045
Tumor
0.2
386
Normal
0.2
628
Normal
0.1
354
Normal
0.1
728
Normal
0.1
518
Normal
0.1
124
Normal
0.1
112
Tumor
0.1
636
Normal
0.1
925
Tumor
0.1
456
Normal
0.1
466
Normal
0.1
756
Normal
0.1
1046
Normal
0.1
224
Normal
0.1
914
Normal
0.1
448
Normal
0.1
131
Tumor
0.1
868
Normal
0.1
944
Normal
0.1
278
Normal
0.1
514
Normal
0.1
284
Normal
0.1
727
Tumor
0.1
714
Normal
0.1
663
Tumor
0.1
982
Normal
0.1
958
Normal
0.1
285
Tumor
0.1
778
Normal
0.1
332
Normal
0.1
786
Normal
0.1
192
Normal
0.1
1013
Tumor
0.1
328
Normal
0.1
415
Tumor
0.1
364
Normal
0.1
358
Normal
0.1
394
Normal
0.1
722
Normal
0.1
952
Normal
0.1
125
Tumor
0.1
463
Tumor
0.1
436
Normal
0.1
114
Normal
0.1
968
Normal
0.1
648
Normal
0.1
517
Tumor
0.1
221
Tumor
0.1
873
Tumor
0.1
388
Normal
0.1
425
Tumor
0.1
635
Tumor
0.1
864
Normal
0.1
132
Normal
0.1
412
Normal
0.1
742
Normal
0.1
433
Tumor
0.1
432
Normal
0.1
262
Normal
0.1
431
Tumor
0.1
537
Tumor
0.1
312
Normal
0.1
695
Tumor
0.1
258
Normal
0.1
738
Normal
0.1
186
Normal
0.1
446
Normal
0.1
563
Tumor
0.1
357
Tumor
0.1
617
Tumor
0.1
1015
Tumor
0.1
977
Tumor
0.1
498
Normal
0.1
546
Normal
0.1
344
Normal
0.1
966
Normal
0.1
572
Normal
0.1
472
Normal
0.1
128
Normal
0.1
428
Normal
0.1
376
Normal
0.0
218
Normal
0.0
1014
Normal
0.0
147
Tumor
0.0
422
Normal
0.0
368
Normal
0.0
462
Normal
0.0
366
Normal
0.0
212
Normal
0.0
1022
Normal
0.0
232
Normal
0.0
915
Tumor
0.0
534
Normal
0.0
231
Tumor
0.0
314
Normal
0.0
524
Normal
0.0
963
Tumor
0.0
494
Normal
0.0
434
Normal
0.0
916
Normal
0.0
647
Tumor
0.0
568
Normal
0.0
435
Tumor
0.0
662
Normal
0.0
138
Normal
0.0
882
Normal
0.0
111
Normal
0.0
482
Normal
0.0
741
Tumor
0.0
298
Normal
0.0
664
Normal
0.0
356
Normal
0.0
564
Normal
0.0
126
Normal
0.0
488
Normal
0.0
724
Normal
0.0
818
Normal
0.0
424
Normal
0.0
384
Normal
0.0
414
Normal
0.0
554
Normal
0.0
352
Normal
0.0
1032
Normal
0.0
484
Normal
0.0
196
Normal
0.0
715
Tumor
0.0
188
Normal
0.0
666
Normal
0.0
953
Tumor
0.0
136
Normal
0.0
137
Tumor
0.0
965
Tumor
0.0
465
Tumor
0.0
272
Normal
0.0
526
Normal
0.0
696
Normal
0.0
1016
Normal
0.0
686
Normal
0.0
574
Normal
0.0
444
Normal
0.0
918
Normal
0.0
737
Tumor
0.0
327
Tumor
0.0
858
Normal
0.0
852
Normal
0.0
954
Normal
0.0
227
Tumor
0.0
1026
Normal
0.0
528
Normal
0.0
362
Normal
0.0
142
Normal
-0.1
497
Tumor
-0.1
162
Normal
-0.1
716
Normal
-0.1
744
Normal
-0.1
468
Normal
-0.1
392
Normal
-0.1
478
Normal
-0.1
978
Normal
-0.1
1021
Tumor
-0.1
922
Normal
-0.1
172
Normal
-0.1
874
Normal
-0.1
474
Normal
-0.1
558
Normal
-0.1
353
Tumor
-0.1
1044
Normal
-0.1
824
Normal
-0.1
1041
Tumor
-0.1
861
Tumor
-0.1
447
Tumor
-0.1
426
Normal
-0.1
148
Normal
-0.1
917
Tumor
-0.1
984
Normal
-0.1
672
Normal
-0.1
567
Tumor
-0.1
536
Normal
-0.1
538
Normal
-0.1
146
Normal
-0.1
867
Tumor
-0.1
661
Tumor
-0.1
1042
Normal
-0.1
926
Normal
-0.1
421
Tumor
-0.1
1028
Normal
-0.1
283
Tumor
-0.1
413
Tumor
-0.1
721
Tumor
-0.1
983
Tumor
-0.1
423
Tumor
-0.1
471
Tumor
-0.1
113
Tumor
-0.1
268
Normal
-0.1
395
Tumor
-0.1
451
Tumor
-0.1
135
Tumor
-0.2
461
Tumor
-0.2
492
Normal
-0.2
393
Tumor
-0.2
185
Tumor
-0.2
195
Tumor
-0.2
223
Tumor
-0.2
363
Tumor
-0.2
713
Tumor
-0.2
361
Tumor
-0.2
343
Tumor
-0.2
396
Normal
-0.2
187
Tumor
-0.2
481
Tumor
-0.2
866
Normal
-0.2
367
Tumor
-0.2
881
Tumor
-0.2
641
Tumor
-0.2
857
Tumor
-0.2
383
Tumor
-0.2
814
Normal
-0.2
545
Tumor
-0.2
145
Tumor
-0.2
257
Tumor
-0.3
191
Tumor
-0.3
573
Tumor
-0.3
823
Tumor
-0.3
525
Tumor
-0.3
491
Tumor
-0.3
951
Tumor
-0.3
523
Tumor
-0.3
297
Tumor
-0.3
743
Tumor
-0.3
311
Tumor
-0.3
817
Tumor
-0.3
975
Tumor
-0.3
487
Tumor
-0.3
943
Tumor
-0.3
493
Tumor
-0.3
553
Tumor
-0.3
533
Tumor
-0.3
355
Tumor
-0.4
1031
Tumor
-0.4
923
Tumor
-0.4
141
Tumor
-0.4
473
Tumor
-0.4
697
Tumor
-0.4
813
Tumor
-0.4
1043
Tumor
-0.4
161
Tumor
-0.4
467
Tumor
-0.4
535
Tumor
-0.4
385
Tumor
-0.4
341
Tumor
-0.5
557
Tumor
-0.5
443
Tumor
-0.5
375
Tumor
-0.5
427
Tumor
-0.5
211
Tumor
-0.5
957
Tumor
-0.6
865
Tumor
-0.6
527
Tumor
-0.7
1025
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
