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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPR108 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
96.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
81.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
66.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
60.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
59.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
58.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
57.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
52.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
51.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
49.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
48.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
46.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
44.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
44.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
43.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
43.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
42.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
41.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
41.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
40.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
40.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
39.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
39.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
39.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
39.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
38.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
38.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
38.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
38.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
37.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
36.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
36.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
36.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
36.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
35.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
35.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
35.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
35.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
34.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
34.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
34.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
34.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
33.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
33.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
33.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
33.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
32.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
32.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
32.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
32.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
32.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
32.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
32.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
32.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
32.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
31.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
31.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
31.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
31.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
31.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
30.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
30.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
30.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
30.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
30.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
30.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
30.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
30.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
29.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
29.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
29.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
28.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
28.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
28.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
27.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
27.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
27.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
27.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
27.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
27.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
27.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
27.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
27.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
26.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
26.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
26.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
26.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
26.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
26.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
26.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
26.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
26.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
26.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
26.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
25.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
25.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
25.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
25.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
25.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
25.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
25.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
25.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
25.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
25.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
25.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
25.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
24.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
23.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
23.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
23.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
23.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
23.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
23.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
22.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
22.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
22.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
22.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
22.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
21.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
21.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
21.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
20.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
20.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
20.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
18.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
17.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
16.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
15.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPR108 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.7
Number of samples
231
Samples
Sample
Description
TPM
DO23518
0 years, male, NA, stage:2, alive, 1320 days
87.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
73.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
69.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
58.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
54.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
53.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
53.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
51.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
44.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
44.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
43.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
42.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
40.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
39.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
39.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
39.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
38.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
38.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
38.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
37.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
36.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
35.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
35.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
35.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
35.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
34.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
34.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
34.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
34.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
34.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
33.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
33.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
33.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
33.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
33.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
33.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
33.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
32.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
32.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
32.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
32.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
32.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
32.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
31.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
31.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
31.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
31.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
31.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
31.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
31.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
31.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
31.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
30.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
30.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
30.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
30.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
30.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
30.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
30.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
29.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
29.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
29.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
29.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
29.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
28.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
28.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
28.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
27.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
27.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
27.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
27.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
26.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
26.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
26.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
26.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
26.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
25.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
25.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
25.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
25.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
24.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
24.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
24.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
24.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
24.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
23.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
23.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
23.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
22.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
271
Tumor
1.5
223
Tumor
1.2
963
Tumor
1.1
285
Tumor
1.1
697
Tumor
1.1
823
Tumor
1.0
685
Tumor
1.0
1027
Tumor
1.0
395
Tumor
1.0
881
Tumor
1.0
557
Tumor
0.9
713
Tumor
0.9
257
Tumor
0.9
125
Tumor
0.9
393
Tumor
0.8
277
Tumor
0.8
641
Tumor
0.8
487
Tumor
0.7
491
Tumor
0.7
665
Tumor
0.6
523
Tumor
0.6
471
Tumor
0.6
211
Tumor
0.6
981
Tumor
0.6
647
Tumor
0.6
221
Tumor
0.6
355
Tumor
0.5
727
Tumor
0.5
451
Tumor
0.5
861
Tumor
0.5
663
Tumor
0.5
883
Tumor
0.5
977
Tumor
0.5
915
Tumor
0.5
865
Tumor
0.5
724
Normal
0.5
311
Tumor
0.5
411
Tumor
0.4
527
Tumor
0.4
923
Tumor
0.4
147
Tumor
0.4
443
Tumor
0.4
851
Tumor
0.4
921
Tumor
0.4
515
Tumor
0.4
975
Tumor
0.4
1041
Tumor
0.3
231
Tumor
0.3
925
Tumor
0.3
715
Tumor
0.3
1013
Tumor
0.3
1015
Tumor
0.3
937
Tumor
0.3
227
Tumor
0.3
635
Tumor
0.3
413
Tumor
0.3
755
Tumor
0.2
461
Tumor
0.2
573
Tumor
0.2
983
Tumor
0.2
615
Tumor
0.2
433
Tumor
0.2
721
Tumor
0.2
383
Tumor
0.2
435
Tumor
0.2
171
Tumor
0.2
427
Tumor
0.2
473
Tumor
0.2
737
Tumor
0.2
261
Tumor
0.2
571
Tumor
0.2
187
Tumor
0.2
431
Tumor
0.2
1025
Tumor
0.2
447
Tumor
0.1
145
Tumor
0.1
341
Tumor
0.1
1021
Tumor
0.1
953
Tumor
0.1
817
Tumor
0.1
123
Tumor
0.1
815
Tumor
0.1
297
Tumor
0.1
481
Tumor
0.1
387
Tumor
0.1
363
Tumor
0.1
526
Normal
0.1
463
Tumor
0.1
877
Tumor
0.1
525
Tumor
0.1
553
Tumor
0.1
141
Tumor
0.1
327
Tumor
0.1
331
Tumor
0.1
455
Tumor
0.0
954
Normal
0.0
545
Tumor
0.0
213
Tumor
0.0
195
Tumor
0.0
191
Tumor
0.0
497
Tumor
0.0
745
Tumor
0.0
743
Tumor
0.0
415
Tumor
0.0
1045
Tumor
0.0
617
Tumor
0.0
385
Tumor
0.0
814
Normal
0.0
785
Tumor
0.0
137
Tumor
-0.1
142
Normal
-0.1
978
Normal
-0.1
267
Tumor
-0.1
535
Tumor
-0.1
558
Normal
-0.1
695
Tumor
-0.1
723
Tumor
-0.1
567
Tumor
-0.1
212
Normal
-0.1
965
Tumor
-0.1
478
Normal
-0.1
913
Tumor
-0.1
135
Tumor
-0.1
533
Tumor
-0.1
517
Tumor
-0.1
536
Normal
-0.1
1016
Normal
-0.1
361
Tumor
-0.1
516
Normal
-0.1
1014
Normal
-0.1
462
Normal
-0.1
467
Tumor
-0.1
513
Tumor
-0.2
343
Tumor
-0.2
922
Normal
-0.2
283
Tumor
-0.2
112
Tumor
-0.2
392
Normal
-0.2
1044
Normal
-0.2
813
Tumor
-0.2
436
Normal
-0.2
328
Normal
-0.2
113
Tumor
-0.2
943
Tumor
-0.2
698
Normal
-0.2
493
Tumor
-0.2
917
Tumor
-0.2
524
Normal
-0.2
357
Tumor
-0.2
313
Tumor
-0.2
984
Normal
-0.2
466
Normal
-0.2
741
Tumor
-0.2
967
Tumor
-0.2
944
Normal
-0.2
728
Normal
-0.2
636
Normal
-0.2
465
Tumor
-0.2
268
Normal
-0.2
217
Tumor
-0.2
926
Normal
-0.2
916
Normal
-0.2
867
Tumor
-0.2
918
Normal
-0.2
951
Tumor
-0.2
873
Tumor
-0.2
425
Tumor
-0.2
218
Normal
-0.2
938
Normal
-0.3
332
Normal
-0.3
1031
Tumor
-0.3
528
Normal
-0.3
214
Normal
-0.3
1043
Tumor
-0.3
786
Normal
-0.3
958
Normal
-0.3
911
Tumor
-0.3
1046
Normal
-0.3
514
Normal
-0.3
394
Normal
-0.3
114
Normal
-0.3
421
Tumor
-0.3
976
Normal
-0.3
188
Normal
-0.3
477
Tumor
-0.3
396
Normal
-0.3
432
Normal
-0.3
365
Tumor
-0.3
568
Normal
-0.3
186
Normal
-0.3
686
Normal
-0.3
696
Normal
-0.3
364
Normal
-0.3
434
Normal
-0.3
482
Normal
-0.3
924
Normal
-0.3
448
Normal
-0.3
224
Normal
-0.3
616
Normal
-0.3
498
Normal
-0.3
472
Normal
-0.3
284
Normal
-0.3
423
Tumor
-0.3
132
Normal
-0.3
546
Normal
-0.3
982
Normal
-0.3
272
Normal
-0.3
356
Normal
-0.3
185
Tumor
-0.3
388
Normal
-0.3
161
Tumor
-0.3
192
Normal
-0.4
492
Normal
-0.4
474
Normal
-0.4
138
Normal
-0.4
742
Normal
-0.4
572
Normal
-0.4
956
Normal
-0.4
126
Normal
-0.4
756
Normal
-0.4
162
Normal
-0.4
111
Normal
-0.4
966
Normal
-0.4
671
Tumor
-0.4
278
Normal
-0.4
868
Normal
-0.4
228
Normal
-0.4
538
Normal
-0.4
286
Normal
-0.4
662
Normal
-0.4
778
Normal
-0.4
955
Tumor
-0.4
146
Normal
-0.4
416
Normal
-0.4
857
Tumor
-0.4
362
Normal
-0.4
648
Normal
-0.4
314
Normal
-0.4
563
Tumor
-0.4
824
Normal
-0.4
353
Tumor
-0.4
298
Normal
-0.4
574
Normal
-0.4
957
Tumor
-0.4
483
Tumor
-0.4
852
Normal
-0.4
352
Normal
-0.5
414
Normal
-0.5
744
Normal
-0.5
884
Normal
-0.5
484
Normal
-0.5
661
Tumor
-0.5
312
Normal
-0.5
136
Normal
-0.5
722
Normal
-0.5
878
Normal
-0.5
1032
Normal
-0.5
816
Normal
-0.5
642
Normal
-0.5
488
Normal
-0.5
716
Normal
-0.5
818
Normal
-0.5
412
Normal
-0.5
344
Normal
-0.5
196
Normal
-0.5
128
Normal
-0.5
952
Normal
-0.5
618
Normal
-0.5
444
Normal
-0.5
518
Normal
-0.5
864
Normal
-0.5
384
Normal
-0.5
172
Normal
-0.5
1042
Normal
-0.5
446
Normal
-0.5
131
Tumor
-0.5
258
Normal
-0.5
537
Tumor
-0.5
777
Tumor
-0.5
422
Normal
-0.5
445
Tumor
-0.5
672
Normal
-0.5
866
Normal
-0.5
386
Normal
-0.5
628
Normal
-0.5
262
Normal
-0.5
666
Normal
-0.5
452
Normal
-0.5
914
Normal
-0.5
1026
Normal
-0.6
627
Tumor
-0.6
863
Tumor
-0.6
354
Normal
-0.6
1028
Normal
-0.6
964
Normal
-0.6
367
Tumor
-0.6
468
Normal
-0.6
882
Normal
-0.6
912
Normal
-0.6
494
Normal
-0.6
127
Tumor
-0.6
124
Normal
-0.6
858
Normal
-0.6
464
Normal
-0.6
366
Normal
-0.6
664
Normal
-0.6
351
Tumor
-0.6
746
Normal
-0.6
222
Normal
-0.6
968
Normal
-0.6
1022
Normal
-0.6
428
Normal
-0.7
862
Normal
-0.7
148
Normal
-0.7
232
Normal
-0.7
874
Normal
-0.7
342
Normal
-0.7
738
Normal
-0.7
456
Normal
-0.7
375
Tumor
-0.7
424
Normal
-0.7
391
Tumor
-0.7
564
Normal
-0.7
426
Normal
-0.8
714
Normal
-0.8
376
Normal
-0.8
554
Normal
-0.8
534
Normal
-0.8
368
Normal
-0.9
358
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
