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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF113A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
48.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
48.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
34.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
32.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
30.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
25.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
25.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
24.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
23.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
22.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
21.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
20.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
20.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
20.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
19.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
16.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
12.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF113A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.1
Number of samples
231
Samples
Sample
Description
TPM
DO45149
0 years, female, NA, stage:2, alive, 1260 days
50.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
31.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
26.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
26.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
26.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
26.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
25.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
24.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
22.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.5
685
Tumor
1.3
977
Tumor
1.3
1013
Tumor
1.2
527
Tumor
1.2
473
Tumor
1.1
857
Tumor
1.1
951
Tumor
1.1
497
Tumor
1.1
411
Tumor
1.0
815
Tumor
1.0
647
Tumor
1.0
383
Tumor
0.9
487
Tumor
0.9
913
Tumor
0.9
865
Tumor
0.9
983
Tumor
0.9
351
Tumor
0.9
861
Tumor
0.8
523
Tumor
0.8
261
Tumor
0.8
1021
Tumor
0.8
123
Tumor
0.8
131
Tumor
0.8
957
Tumor
0.8
665
Tumor
0.7
967
Tumor
0.7
431
Tumor
0.7
741
Tumor
0.7
537
Tumor
0.7
285
Tumor
0.7
171
Tumor
0.7
883
Tumor
0.7
533
Tumor
0.7
695
Tumor
0.7
863
Tumor
0.7
777
Tumor
0.6
481
Tumor
0.6
873
Tumor
0.6
545
Tumor
0.6
785
Tumor
0.6
661
Tumor
0.6
313
Tumor
0.6
737
Tumor
0.6
211
Tumor
0.6
1031
Tumor
0.6
813
Tumor
0.6
1041
Tumor
0.6
112
Tumor
0.5
817
Tumor
0.5
921
Tumor
0.5
557
Tumor
0.5
975
Tumor
0.5
937
Tumor
0.5
814
Normal
0.5
161
Tumor
0.5
395
Tumor
0.5
553
Tumor
0.5
635
Tumor
0.5
715
Tumor
0.5
525
Tumor
0.5
477
Tumor
0.5
413
Tumor
0.5
881
Tumor
0.5
493
Tumor
0.5
743
Tumor
0.4
535
Tumor
0.4
227
Tumor
0.4
445
Tumor
0.4
391
Tumor
0.4
697
Tumor
0.4
355
Tumor
0.4
327
Tumor
0.4
461
Tumor
0.4
343
Tumor
0.4
851
Tumor
0.4
415
Tumor
0.4
425
Tumor
0.4
385
Tumor
0.4
627
Tumor
0.4
231
Tumor
0.4
433
Tumor
0.3
471
Tumor
0.3
567
Tumor
0.3
953
Tumor
0.3
513
Tumor
0.3
1015
Tumor
0.3
963
Tumor
0.3
923
Tumor
0.3
221
Tumor
0.3
524
Normal
0.2
943
Tumor
0.2
217
Tumor
0.2
884
Normal
0.2
484
Normal
0.2
966
Normal
0.2
447
Tumor
0.2
443
Tumor
0.2
387
Tumor
0.2
571
Tumor
0.2
922
Normal
0.2
465
Tumor
0.2
363
Tumor
0.2
367
Tumor
0.2
925
Tumor
0.2
141
Tumor
0.2
393
Tumor
0.2
1025
Tumor
0.2
882
Normal
0.2
467
Tumor
0.2
724
Normal
0.2
862
Normal
0.2
455
Tumor
0.2
867
Tumor
0.2
955
Tumor
0.2
742
Normal
0.2
671
Tumor
0.2
984
Normal
0.2
498
Normal
0.2
483
Tumor
0.1
746
Normal
0.1
341
Tumor
0.1
723
Tumor
0.1
878
Normal
0.1
1026
Normal
0.1
1028
Normal
0.1
515
Tumor
0.1
981
Tumor
0.1
1022
Normal
0.1
277
Tumor
0.1
536
Normal
0.1
912
Normal
0.1
223
Tumor
0.1
864
Normal
0.1
924
Normal
0.1
518
Normal
0.1
823
Tumor
0.1
744
Normal
0.1
968
Normal
0.1
331
Tumor
0.1
918
Normal
0.1
267
Tumor
0.1
926
Normal
0.1
283
Tumor
0.1
286
Normal
0.1
297
Tumor
0.1
311
Tumor
0.1
435
Tumor
0.1
1016
Normal
0.1
554
Normal
0.1
696
Normal
0.1
135
Tumor
0.1
1045
Tumor
0.0
944
Normal
0.0
911
Tumor
0.0
488
Normal
0.0
546
Normal
0.0
357
Tumor
0.0
492
Normal
0.0
284
Normal
0.0
915
Tumor
0.0
187
Tumor
0.0
628
Normal
0.0
137
Tumor
0.0
213
Tumor
0.0
721
Tumor
0.0
494
Normal
0.0
573
Tumor
0.0
874
Normal
0.0
228
Normal
0.0
427
Tumor
0.0
563
Tumor
0.0
528
Normal
0.0
952
Normal
0.0
516
Normal
0.0
212
Normal
0.0
641
Tumor
0.0
877
Tumor
0.0
534
Normal
0.0
451
Tumor
0.0
617
Tumor
0.0
491
Tumor
0.0
364
Normal
0.0
344
Normal
0.0
375
Tumor
0.0
232
Normal
0.0
914
Normal
0.0
416
Normal
0.0
412
Normal
0.0
384
Normal
0.0
866
Normal
0.0
714
Normal
0.0
958
Normal
0.0
756
Normal
0.0
538
Normal
-0.1
916
Normal
-0.1
526
Normal
-0.1
755
Tumor
-0.1
162
Normal
-0.1
727
Tumor
-0.1
976
Normal
-0.1
1042
Normal
-0.1
982
Normal
-0.1
1014
Normal
-0.1
1032
Normal
-0.1
376
Normal
-0.1
148
Normal
-0.1
954
Normal
-0.1
298
Normal
-0.1
558
Normal
-0.1
396
Normal
-0.1
474
Normal
-0.1
188
Normal
-0.1
852
Normal
-0.1
615
Tumor
-0.1
271
Tumor
-0.1
917
Tumor
-0.1
816
Normal
-0.1
728
Normal
-0.1
463
Tumor
-0.1
1027
Tumor
-0.1
663
Tumor
-0.1
172
Normal
-0.1
224
Normal
-0.1
978
Normal
-0.1
125
Tumor
-0.1
195
Tumor
-0.1
745
Tumor
-0.1
186
Normal
-0.1
113
Tumor
-0.1
938
Normal
-0.1
258
Normal
-0.1
964
Normal
-0.2
361
Tumor
-0.2
672
Normal
-0.2
365
Tumor
-0.2
191
Tumor
-0.2
185
Tumor
-0.2
824
Normal
-0.2
362
Normal
-0.2
616
Normal
-0.2
1043
Tumor
-0.2
778
Normal
-0.2
356
Normal
-0.2
618
Normal
-0.2
636
Normal
-0.2
366
Normal
-0.2
716
Normal
-0.2
572
Normal
-0.2
642
Normal
-0.2
858
Normal
-0.2
278
Normal
-0.2
514
Normal
-0.2
517
Tumor
-0.2
262
Normal
-0.2
722
Normal
-0.2
713
Tumor
-0.2
738
Normal
-0.2
218
Normal
-0.2
328
Normal
-0.2
686
Normal
-0.2
147
Tumor
-0.2
353
Tumor
-0.2
192
Normal
-0.2
386
Normal
-0.2
332
Normal
-0.2
478
Normal
-0.2
352
Normal
-0.3
574
Normal
-0.3
698
Normal
-0.3
786
Normal
-0.3
472
Normal
-0.3
564
Normal
-0.3
392
Normal
-0.3
114
Normal
-0.3
312
Normal
-0.3
648
Normal
-0.3
818
Normal
-0.3
482
Normal
-0.3
257
Tumor
-0.3
664
Normal
-0.3
145
Tumor
-0.3
421
Tumor
-0.3
272
Normal
-0.3
111
Normal
-0.3
268
Normal
-0.3
388
Normal
-0.3
222
Normal
-0.3
368
Normal
-0.3
342
Normal
-0.3
214
Normal
-0.3
354
Normal
-0.3
462
Normal
-0.3
956
Normal
-0.3
142
Normal
-0.3
466
Normal
-0.3
146
Normal
-0.3
136
Normal
-0.3
124
Normal
-0.3
128
Normal
-0.4
868
Normal
-0.4
568
Normal
-0.4
358
Normal
-0.4
196
Normal
-0.4
666
Normal
-0.4
424
Normal
-0.4
423
Tumor
-0.4
1044
Normal
-0.4
468
Normal
-0.4
138
Normal
-0.4
132
Normal
-0.4
394
Normal
-0.4
126
Normal
-0.4
127
Tumor
-0.4
452
Normal
-0.4
434
Normal
-0.5
662
Normal
-0.5
428
Normal
-0.5
422
Normal
-0.5
436
Normal
-0.5
1046
Normal
-0.5
314
Normal
-0.5
426
Normal
-0.5
446
Normal
-0.5
448
Normal
-0.5
414
Normal
-0.6
456
Normal
-0.6
432
Normal
-0.6
444
Normal
-0.7
464
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
