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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TBCC is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
41.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
35.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
34.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
31.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
30.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
27.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
27.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
25.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
25.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
21.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TBCC is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.1
Number of samples
231
Samples
Sample
Description
TPM
DO48746
0 years, male, NA, stage:3, alive, 570 days
60.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
39.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
29.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
23.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.1
123
Tumor
1.1
553
Tumor
0.9
545
Tumor
0.8
497
Tumor
0.8
695
Tumor
0.8
385
Tumor
0.8
743
Tumor
0.7
331
Tumor
0.7
635
Tumor
0.7
221
Tumor
0.7
517
Tumor
0.7
1013
Tumor
0.7
271
Tumor
0.6
171
Tumor
0.6
951
Tumor
0.6
957
Tumor
0.6
977
Tumor
0.6
877
Tumor
0.6
661
Tumor
0.6
277
Tumor
0.5
231
Tumor
0.5
351
Tumor
0.5
715
Tumor
0.5
671
Tumor
0.5
285
Tumor
0.4
965
Tumor
0.4
663
Tumor
0.4
737
Tumor
0.4
523
Tumor
0.4
665
Tumor
0.4
493
Tumor
0.4
921
Tumor
0.4
1025
Tumor
0.4
463
Tumor
0.4
363
Tumor
0.3
491
Tumor
0.3
191
Tumor
0.3
425
Tumor
0.3
367
Tumor
0.3
435
Tumor
0.3
433
Tumor
0.3
745
Tumor
0.3
393
Tumor
0.3
127
Tumor
0.3
923
Tumor
0.3
313
Tumor
0.3
741
Tumor
0.3
391
Tumor
0.3
112
Tumor
0.3
467
Tumor
0.3
343
Tumor
0.3
911
Tumor
0.3
283
Tumor
0.2
147
Tumor
0.2
387
Tumor
0.2
724
Normal
0.2
881
Tumor
0.2
727
Tumor
0.2
473
Tumor
0.2
777
Tumor
0.2
535
Tumor
0.2
1043
Tumor
0.2
311
Tumor
0.2
1021
Tumor
0.2
1027
Tumor
0.2
1015
Tumor
0.2
217
Tumor
0.2
527
Tumor
0.2
537
Tumor
0.2
483
Tumor
0.2
917
Tumor
0.2
617
Tumor
0.2
161
Tumor
0.2
357
Tumor
0.2
413
Tumor
0.2
785
Tumor
0.1
883
Tumor
0.1
125
Tumor
0.1
447
Tumor
0.1
261
Tumor
0.1
341
Tumor
0.1
411
Tumor
0.1
477
Tumor
0.1
915
Tumor
0.1
211
Tumor
0.1
492
Normal
0.1
815
Tumor
0.1
185
Tumor
0.1
213
Tumor
0.1
455
Tumor
0.1
967
Tumor
0.1
937
Tumor
0.1
943
Tumor
0.1
297
Tumor
0.1
697
Tumor
0.1
525
Tumor
0.1
431
Tumor
0.1
823
Tumor
0.1
533
Tumor
0.1
436
Normal
0.1
487
Tumor
0.1
963
Tumor
0.1
557
Tumor
0.1
195
Tumor
0.1
361
Tumor
0.1
365
Tumor
0.1
721
Tumor
0.1
267
Tumor
0.1
814
Normal
0.0
461
Tumor
0.0
983
Tumor
0.0
515
Tumor
0.0
1041
Tumor
0.0
817
Tumor
0.0
516
Normal
0.0
445
Tumor
0.0
518
Normal
0.0
913
Tumor
0.0
375
Tumor
0.0
187
Tumor
0.0
685
Tumor
0.0
641
Tumor
0.0
451
Tumor
0.0
851
Tumor
0.0
141
Tumor
0.0
925
Tumor
0.0
863
Tumor
0.0
212
Normal
0.0
571
Tumor
0.0
268
Normal
0.0
873
Tumor
0.0
444
Normal
0.0
364
Normal
0.0
1031
Tumor
0.0
975
Tumor
0.0
926
Normal
0.0
813
Tumor
0.0
113
Tumor
0.0
728
Normal
0.0
395
Tumor
0.0
416
Normal
0.0
953
Tumor
0.0
421
Tumor
0.0
976
Normal
0.0
192
Normal
0.0
434
Normal
0.0
423
Tumor
0.0
222
Normal
0.0
342
Normal
0.0
386
Normal
0.0
132
Normal
0.0
647
Tumor
0.0
135
Tumor
0.0
642
Normal
0.0
546
Normal
0.0
858
Normal
0.0
498
Normal
0.0
526
Normal
0.0
968
Normal
0.0
257
Tumor
0.0
471
Tumor
0.0
966
Normal
0.0
353
Tumor
-0.1
861
Tumor
-0.1
952
Normal
-0.1
312
Normal
-0.1
567
Tumor
-0.1
534
Normal
-0.1
218
Normal
-0.1
618
Normal
-0.1
918
Normal
-0.1
1042
Normal
-0.1
982
Normal
-0.1
874
Normal
-0.1
137
Tumor
-0.1
188
Normal
-0.1
713
Tumor
-0.1
443
Tumor
-0.1
396
Normal
-0.1
573
Tumor
-0.1
958
Normal
-0.1
857
Tumor
-0.1
472
Normal
-0.1
1045
Tumor
-0.1
124
Normal
-0.1
214
Normal
-0.1
355
Tumor
-0.1
456
Normal
-0.1
944
Normal
-0.1
172
Normal
-0.1
924
Normal
-0.1
628
Normal
-0.1
1032
Normal
-0.1
536
Normal
-0.1
415
Tumor
-0.1
862
Normal
-0.1
484
Normal
-0.1
1026
Normal
-0.1
162
Normal
-0.1
744
Normal
-0.1
366
Normal
-0.1
538
Normal
-0.1
698
Normal
-0.1
327
Tumor
-0.1
392
Normal
-0.1
362
Normal
-0.1
914
Normal
-0.1
452
Normal
-0.1
984
Normal
-0.1
981
Tumor
-0.1
514
Normal
-0.1
284
Normal
-0.1
272
Normal
-0.1
223
Tumor
-0.1
186
Normal
-0.1
956
Normal
-0.1
464
Normal
-0.1
358
Normal
-0.1
368
Normal
-0.1
394
Normal
-0.1
354
Normal
-0.1
482
Normal
-0.1
852
Normal
-0.1
524
Normal
-0.1
1016
Normal
-0.1
616
Normal
-0.1
916
Normal
-0.1
126
Normal
-0.1
818
Normal
-0.1
227
Tumor
-0.1
978
Normal
-0.1
478
Normal
-0.1
868
Normal
-0.1
742
Normal
-0.1
328
Normal
-0.1
755
Tumor
-0.1
145
Tumor
-0.1
383
Tumor
-0.1
465
Tumor
-0.1
746
Normal
-0.1
196
Normal
-0.1
426
Normal
-0.1
432
Normal
-0.1
955
Tumor
-0.1
278
Normal
-0.1
714
Normal
-0.2
1046
Normal
-0.2
136
Normal
-0.2
388
Normal
-0.2
636
Normal
-0.2
262
Normal
-0.2
148
Normal
-0.2
446
Normal
-0.2
528
Normal
-0.2
356
Normal
-0.2
481
Tumor
-0.2
738
Normal
-0.2
258
Normal
-0.2
146
Normal
-0.2
228
Normal
-0.2
865
Tumor
-0.2
554
Normal
-0.2
1028
Normal
-0.2
427
Tumor
-0.2
778
Normal
-0.2
224
Normal
-0.2
954
Normal
-0.2
672
Normal
-0.2
864
Normal
-0.2
314
Normal
-0.2
468
Normal
-0.2
912
Normal
-0.2
286
Normal
-0.2
138
Normal
-0.2
332
Normal
-0.2
964
Normal
-0.2
627
Tumor
-0.2
474
Normal
-0.2
412
Normal
-0.2
867
Tumor
-0.2
422
Normal
-0.2
884
Normal
-0.2
466
Normal
-0.2
866
Normal
-0.2
686
Normal
-0.2
232
Normal
-0.2
816
Normal
-0.2
938
Normal
-0.2
1014
Normal
-0.2
882
Normal
-0.2
414
Normal
-0.2
1044
Normal
-0.2
786
Normal
-0.2
756
Normal
-0.2
1022
Normal
-0.2
574
Normal
-0.2
462
Normal
-0.2
114
Normal
-0.2
128
Normal
-0.2
696
Normal
-0.2
922
Normal
-0.2
666
Normal
-0.2
142
Normal
-0.2
648
Normal
-0.2
376
Normal
-0.3
344
Normal
-0.3
664
Normal
-0.3
716
Normal
-0.3
494
Normal
-0.3
824
Normal
-0.3
568
Normal
-0.3
352
Normal
-0.3
563
Tumor
-0.3
722
Normal
-0.3
298
Normal
-0.3
488
Normal
-0.3
615
Tumor
-0.3
111
Normal
-0.3
564
Normal
-0.3
428
Normal
-0.3
424
Normal
-0.3
384
Normal
-0.3
878
Normal
-0.3
558
Normal
-0.3
662
Normal
-0.3
448
Normal
-0.3
572
Normal
-0.4
723
Tumor
-0.4
513
Tumor
-0.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
