MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.5 nTPM
HPA Brain:83.1 nTPM
GTEx:27.5 nTPM
FANTOM5:207.8 Scaled Tags Per Million
Pig:65.3 nTPM
Mouse:39.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 83.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.1
2586 Male, age 75, left hemisphere 77.6
2019 Male, age 18, unknown 74.3
1830 Male, age 51, unknown 74.1
2666 Male, age 74, left hemisphere 73.7
1870 Female, age 42, unknown 72.9
1827 Male, age 72, unknown 72.5
1833 Male, age 53, unknown 72.2
2828 Female, age 72, unknown 70.8
2219 Male, age 76, both hemispheres 67.1
2411 Female, age 72, unknown 65.6
Dorsal raphe nucleus
nTPM: 70.8
2750 Male, age 76, both hemispheres 75.3
1828 Male, age 53, unknown 71.9
2047 Male, age 72, unknown 70.0
2016 Female, age 72, unknown 69.9
2298 Female, age 72, unknown 66.7
Inferior colliculus
nTPM: 72.0
1890 Male, age 53, unknown 74.0
2849 Male, age 72, unknown 73.5
2097 Female, age 72, unknown 70.8
1848 Female, age 42, unknown 69.6
Median raphe nucleus
nTPM: 83.1
2220 Male, age 76, midline 83.1
Periaquaductal grey, anterior
nTPM: 67.5
1947 Male, age 18, unknown 70.3
2502 Female, age 75, unknown 67.9
1795 Male, age 51, unknown 64.4
Periaquaductal grey, dorsal
nTPM: 67.2
2850 Male, age 76, both hemispheres 79.5
1831 Male, age 72, unknown 63.8
1840 Male, age 53, unknown 62.9
2464 Female, age 72, unknown 62.7
Periaquaductal grey, lateral
nTPM: 71.9
2272 Male, age 74, both hemispheres 76.1
2140 Male, age 76, both hemispheres 74.3
2053 Male, age 18, unknown 65.3
Pretectal area
nTPM: 71.9
1817 Female, age 42, unknown 81.1
1816 Male, age 51, unknown 79.7
1815 Male, age 53, unknown 76.1
2007 Male, age 72, unknown 75.8
1944 Female, age 72, unknown 74.8
2667 Female, age 75, unknown 70.2
2273 Male, age 74, both hemispheres 68.4
2407 Male, age 75, both hemispheres 68.2
2825 Male, age 18, unknown 67.4
2224 Female, age 72, unknown 64.7
2316 Male, age 76, right hemisphere 64.2
Red nucleus
nTPM: 76.3
2725 Female, age 75, unknown 84.1
1821 Female, age 72, unknown 77.5
1904 Male, age 53, unknown 77.5
1865 Male, age 51, unknown 76.8
1954 Female, age 42, unknown 76.2
2823 Male, age 76, right hemisphere 75.5
2503 Female, age 72, unknown 75.3
2227 Male, age 72, unknown 75.1
2584 Male, age 75, left hemisphere 74.6
2588 Male, age 74, left hemisphere 74.3
2785 Male, age 18, unknown 74.3
2769 Male, age 72, unknown 74.0
Substantia nigra
nTPM: 73.5
1916 Female, age 42, unknown 81.2
2699 Male, age 18, unknown 79.6
1889 Female, age 72, unknown 74.9
1941 Male, age 53, unknown 74.5
2665 Male, age 74, both hemispheres 74.0
1851 Male, age 51, unknown 73.6
2241 Male, age 72, unknown 73.6
2583 Male, age 75, right hemisphere 73.2
2590 Female, age 75, unknown 66.2
2409 Female, age 72, unknown 64.0
Superior colliculus
nTPM: 70.2
1913 Female, age 42, unknown 75.5
2261 Male, age 18, unknown 72.0
1796 Male, age 53, unknown 71.9
2668 Female, age 75, unknown 71.4
2087 Female, age 72, unknown 71.2
1995 Male, age 72, unknown 71.1
2587 Male, age 74, left hemisphere 70.1
2664 Male, age 75, both hemispheres 68.1
1839 Male, age 51, unknown 66.0
1895 Male, age 76, right hemisphere 65.0
Ventral tegmental area
nTPM: 72.5
2223 Female, age 72, unknown 85.7
2218 Male, age 76, both hemispheres 79.3
1915 Female, age 42, unknown 69.4
1942 Male, age 51, unknown 69.4
2410 Female, age 72, unknown 66.0
2021 Male, age 53, unknown 65.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.5
Samples: 139

Max nTPM: 56.4
Min nTPM: 6.6
Std nTPM: 7.4
Median nTPM: 26.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 56.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 53.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 46.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 44.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 43.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 42.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 40.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 39.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 38.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 38.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 38.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 207.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 207.8
FF:10158-103A5 76 years, female 207.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 65.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.3
Samples: 4

Max nTPM: 63.2
Min nTPM: 52.7
Sample A Female 60.9
Sample B Female 52.7
Sample C Male 60.2
Sample D Male 63.2
Midbrain
nTPM: 65.3
Samples: 4

Max nTPM: 78.0
Min nTPM: 57.3
Sample A Female 78.0
Sample B Female 57.3
Sample C Male 68.1
Sample D Male 57.6
Periaqueductal gray
nTPM: 52.4
Samples: 3

Max nTPM: 55.2
Min nTPM: 48.9
Sample B Female 55.2
Sample C Male 53.2
Sample D Male 48.9
Superior colliculi
nTPM: 64.4
Samples: 4

Max nTPM: 71.3
Min nTPM: 57.3
Sample A Female 64.9
Sample B Female 57.3
Sample C Male 71.3
Sample D Male 64.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 39.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.0
Samples: 4

Max nTPM: 42.0
Min nTPM: 37.8
Sample A Male 37.8
Sample B Male 37.9
Sample C Female 42.0
Sample D Female 38.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68301258 Antisense, RP_041129_02_H09, Mouse strain C57BL/6J (56 days, male) 0.1

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