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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CSE1L is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
67.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
58.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
54.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
51.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
49.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
49.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
48.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
48.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
46.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
45.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
43.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
41.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
40.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
39.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
39.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
38.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
38.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
37.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
36.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
36.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
36.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
34.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
34.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
33.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
32.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
32.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
32.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
31.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
31.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
31.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
31.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
30.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
30.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
30.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
30.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
30.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
29.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
29.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
29.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
28.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
28.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
28.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
28.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
27.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
27.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
26.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
25.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
25.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
24.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
23.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
23.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
22.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
22.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CSE1L is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.0
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
98.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
65.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
61.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
57.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
57.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
49.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
49.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
48.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
46.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
44.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
43.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
41.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
41.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
41.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
40.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
39.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
38.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
38.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
38.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
38.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
37.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
37.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
36.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
35.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
34.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
34.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
34.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
33.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
33.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
33.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
31.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
31.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
31.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
31.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
30.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
30.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
29.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
29.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
29.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
29.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
28.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
28.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
28.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
27.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
27.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
26.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
26.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
26.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
25.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
25.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
23.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
23.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
22.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
22.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
21.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
21.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
20.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
20.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
951
Tumor
1.2
385
Tumor
1.0
661
Tumor
1.0
351
Tumor
0.9
1013
Tumor
0.8
743
Tumor
0.8
171
Tumor
0.8
277
Tumor
0.7
671
Tumor
0.7
463
Tumor
0.7
331
Tumor
0.6
567
Tumor
0.6
865
Tumor
0.6
663
Tumor
0.6
313
Tumor
0.6
285
Tumor
0.6
815
Tumor
0.6
983
Tumor
0.5
647
Tumor
0.5
1021
Tumor
0.5
367
Tumor
0.5
125
Tumor
0.5
965
Tumor
0.5
271
Tumor
0.4
391
Tumor
0.4
635
Tumor
0.4
217
Tumor
0.4
1027
Tumor
0.4
665
Tumor
0.4
431
Tumor
0.4
445
Tumor
0.4
537
Tumor
0.4
813
Tumor
0.4
737
Tumor
0.4
425
Tumor
0.4
127
Tumor
0.4
161
Tumor
0.4
257
Tumor
0.4
435
Tumor
0.3
357
Tumor
0.3
387
Tumor
0.3
727
Tumor
0.3
777
Tumor
0.3
283
Tumor
0.3
877
Tumor
0.3
112
Tumor
0.3
685
Tumor
0.3
341
Tumor
0.3
483
Tumor
0.3
615
Tumor
0.3
221
Tumor
0.3
814
Normal
0.3
1043
Tumor
0.2
724
Normal
0.2
573
Tumor
0.2
487
Tumor
0.2
523
Tumor
0.2
411
Tumor
0.2
231
Tumor
0.2
497
Tumor
0.2
113
Tumor
0.2
967
Tumor
0.2
863
Tumor
0.2
741
Tumor
0.2
141
Tumor
0.2
977
Tumor
0.2
817
Tumor
0.2
943
Tumor
0.2
883
Tumor
0.2
375
Tumor
0.2
132
Normal
0.2
137
Tumor
0.2
147
Tumor
0.2
491
Tumor
0.2
343
Tumor
0.1
342
Normal
0.1
923
Tumor
0.1
211
Tumor
0.1
386
Normal
0.1
123
Tumor
0.1
713
Tumor
0.1
467
Tumor
0.1
981
Tumor
0.1
873
Tumor
0.1
126
Normal
0.1
358
Normal
0.1
213
Tumor
0.1
451
Tumor
0.1
957
Tumor
0.1
545
Tumor
0.1
881
Tumor
0.1
465
Tumor
0.1
365
Tumor
0.1
366
Normal
0.1
413
Tumor
0.1
648
Normal
0.1
261
Tumor
0.1
456
Normal
0.1
513
Tumor
0.1
427
Tumor
0.1
185
Tumor
0.1
114
Normal
0.1
388
Normal
0.1
148
Normal
0.1
131
Tumor
0.1
135
Tumor
0.1
517
Tumor
0.1
394
Normal
0.1
563
Tumor
0.1
227
Tumor
0.1
396
Normal
0.1
186
Normal
0.1
172
Normal
0.1
642
Normal
0.1
162
Normal
0.1
426
Normal
0.1
298
Normal
0.1
421
Tumor
0.0
641
Tumor
0.0
424
Normal
0.0
473
Tumor
0.0
666
Normal
0.0
353
Tumor
0.0
368
Normal
0.0
146
Normal
0.0
662
Normal
0.0
297
Tumor
0.0
138
Normal
0.0
447
Tumor
0.0
222
Normal
0.0
232
Normal
0.0
128
Normal
0.0
664
Normal
0.0
195
Tumor
0.0
746
Normal
0.0
414
Normal
0.0
354
Normal
0.0
214
Normal
0.0
145
Tumor
0.0
136
Normal
0.0
428
Normal
0.0
314
Normal
0.0
267
Tumor
0.0
695
Tumor
0.0
535
Tumor
0.0
461
Tumor
0.0
1015
Tumor
0.0
937
Tumor
0.0
436
Normal
0.0
392
Normal
0.0
363
Tumor
0.0
1031
Tumor
0.0
963
Tumor
0.0
738
Normal
0.0
422
Normal
0.0
111
Normal
0.0
742
Normal
0.0
262
Normal
0.0
481
Tumor
0.0
468
Normal
0.0
361
Tumor
0.0
444
Normal
0.0
423
Tumor
0.0
352
Normal
0.0
1026
Normal
0.0
192
Normal
0.0
464
Normal
0.0
344
Normal
0.0
196
Normal
0.0
432
Normal
0.0
272
Normal
0.0
745
Tumor
0.0
433
Tumor
0.0
393
Tumor
0.0
218
Normal
0.0
515
Tumor
0.0
124
Normal
0.0
723
Tumor
0.0
672
Normal
0.0
268
Normal
0.0
921
Tumor
0.0
966
Normal
-0.1
627
Tumor
-0.1
434
Normal
-0.1
557
Tumor
-0.1
553
Tumor
-0.1
618
Normal
-0.1
278
Normal
-0.1
332
Normal
-0.1
911
Tumor
-0.1
443
Tumor
-0.1
527
Tumor
-0.1
955
Tumor
-0.1
376
Normal
-0.1
533
Tumor
-0.1
493
Tumor
-0.1
944
Normal
-0.1
568
Normal
-0.1
564
Normal
-0.1
383
Tumor
-0.1
617
Tumor
-0.1
571
Tumor
-0.1
395
Tumor
-0.1
824
Normal
-0.1
384
Normal
-0.1
851
Tumor
-0.1
616
Normal
-0.1
446
Normal
-0.1
188
Normal
-0.1
191
Tumor
-0.1
982
Normal
-0.1
924
Normal
-0.1
362
Normal
-0.1
915
Tumor
-0.1
1028
Normal
-0.1
861
Tumor
-0.1
785
Tumor
-0.1
452
Normal
-0.1
744
Normal
-0.1
525
Tumor
-0.1
975
Tumor
-0.1
484
Normal
-0.1
786
Normal
-0.1
714
Normal
-0.1
187
Tumor
-0.1
956
Normal
-0.1
1025
Tumor
-0.1
938
Normal
-0.2
721
Tumor
-0.2
416
Normal
-0.2
311
Tumor
-0.2
728
Normal
-0.2
1022
Normal
-0.2
882
Normal
-0.2
984
Normal
-0.2
816
Normal
-0.2
862
Normal
-0.2
818
Normal
-0.2
455
Tumor
-0.2
258
Normal
-0.2
574
Normal
-0.2
914
Normal
-0.2
953
Tumor
-0.2
636
Normal
-0.2
327
Tumor
-0.2
466
Normal
-0.2
312
Normal
-0.2
1016
Normal
-0.2
546
Normal
-0.2
715
Tumor
-0.2
968
Normal
-0.2
284
Normal
-0.2
866
Normal
-0.2
516
Normal
-0.2
534
Normal
-0.2
952
Normal
-0.2
778
Normal
-0.2
697
Tumor
-0.2
1014
Normal
-0.2
448
Normal
-0.2
858
Normal
-0.2
976
Normal
-0.2
716
Normal
-0.2
488
Normal
-0.2
698
Normal
-0.2
471
Tumor
-0.2
628
Normal
-0.2
864
Normal
-0.2
482
Normal
-0.2
364
Normal
-0.2
912
Normal
-0.2
874
Normal
-0.2
474
Normal
-0.2
878
Normal
-0.2
964
Normal
-0.2
228
Normal
-0.2
528
Normal
-0.2
722
Normal
-0.2
1041
Tumor
-0.2
472
Normal
-0.2
494
Normal
-0.2
696
Normal
-0.2
286
Normal
-0.2
1032
Normal
-0.3
686
Normal
-0.3
925
Tumor
-0.3
328
Normal
-0.3
1044
Normal
-0.3
852
Normal
-0.3
212
Normal
-0.3
918
Normal
-0.3
926
Normal
-0.3
978
Normal
-0.3
412
Normal
-0.3
356
Normal
-0.3
917
Tumor
-0.3
756
Normal
-0.3
958
Normal
-0.3
884
Normal
-0.3
526
Normal
-0.3
492
Normal
-0.3
142
Normal
-0.3
916
Normal
-0.3
922
Normal
-0.3
572
Normal
-0.3
224
Normal
-0.3
755
Tumor
-0.3
954
Normal
-0.3
913
Tumor
-0.3
355
Tumor
-0.3
538
Normal
-0.3
514
Normal
-0.3
554
Normal
-0.3
558
Normal
-0.3
498
Normal
-0.3
478
Normal
-0.3
462
Normal
-0.3
1046
Normal
-0.3
1042
Normal
-0.4
868
Normal
-0.4
536
Normal
-0.4
477
Tumor
-0.4
867
Tumor
-0.4
223
Tumor
-0.4
415
Tumor
-0.4
518
Normal
-0.4
1045
Tumor
-0.4
857
Tumor
-0.4
524
Normal
-0.4
823
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
