MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.1 nTPM
HPA Brain:36.6 nTPM
GTEx:18.1 nTPM
FANTOM5:72.0 Scaled Tags Per Million
Pig:34.1 nTPM
Mouse:53.1 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 36.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.4
2411 Female, age 72, unknown 40.6
1870 Female, age 42, unknown 39.7
2019 Male, age 18, unknown 36.8
1833 Male, age 53, unknown 35.1
1830 Male, age 51, unknown 34.3
2219 Male, age 76, both hemispheres 34.3
1827 Male, age 72, unknown 30.6
2666 Male, age 74, left hemisphere 25.7
2828 Female, age 72, unknown 25.1
2586 Male, age 75, left hemisphere 21.7
Dorsal raphe nucleus
nTPM: 33.5
2750 Male, age 76, both hemispheres 38.7
2298 Female, age 72, unknown 34.5
1828 Male, age 53, unknown 33.3
2047 Male, age 72, unknown 31.9
2016 Female, age 72, unknown 29.2
Inferior colliculus
nTPM: 30.7
1848 Female, age 42, unknown 33.9
2097 Female, age 72, unknown 31.4
2849 Male, age 72, unknown 29.1
1890 Male, age 53, unknown 28.5
Median raphe nucleus
nTPM: 31.1
2220 Male, age 76, midline 31.1
Periaquaductal grey, anterior
nTPM: 28.9
1947 Male, age 18, unknown 32.4
2502 Female, age 75, unknown 30.8
1795 Male, age 51, unknown 23.4
Periaquaductal grey, dorsal
nTPM: 27.3
2464 Female, age 72, unknown 29.4
1840 Male, age 53, unknown 28.7
2850 Male, age 76, both hemispheres 26.5
1831 Male, age 72, unknown 24.6
Periaquaductal grey, lateral
nTPM: 27.9
2272 Male, age 74, both hemispheres 32.0
2053 Male, age 18, unknown 27.8
2140 Male, age 76, both hemispheres 23.8
Pretectal area
nTPM: 30.2
2007 Male, age 72, unknown 33.3
1817 Female, age 42, unknown 33.1
2224 Female, age 72, unknown 32.5
2273 Male, age 74, both hemispheres 32.0
1815 Male, age 53, unknown 31.6
1944 Female, age 72, unknown 30.1
2316 Male, age 76, right hemisphere 29.5
1816 Male, age 51, unknown 28.8
2825 Male, age 18, unknown 28.2
2667 Female, age 75, unknown 28.1
2407 Male, age 75, both hemispheres 25.1
Red nucleus
nTPM: 34.6
1821 Female, age 72, unknown 45.3
1865 Male, age 51, unknown 39.3
1954 Female, age 42, unknown 37.4
2503 Female, age 72, unknown 36.1
1904 Male, age 53, unknown 35.0
2823 Male, age 76, right hemisphere 34.6
2785 Male, age 18, unknown 34.1
2769 Male, age 72, unknown 33.5
2227 Male, age 72, unknown 32.8
2725 Female, age 75, unknown 32.5
2588 Male, age 74, left hemisphere 29.9
2584 Male, age 75, left hemisphere 25.2
Substantia nigra
nTPM: 36.6
2241 Male, age 72, unknown 44.2
2409 Female, age 72, unknown 43.3
1916 Female, age 42, unknown 41.4
1941 Male, age 53, unknown 40.9
1851 Male, age 51, unknown 39.5
1889 Female, age 72, unknown 36.2
2590 Female, age 75, unknown 34.1
2699 Male, age 18, unknown 32.2
2583 Male, age 75, right hemisphere 27.2
2665 Male, age 74, both hemispheres 26.8
Superior colliculus
nTPM: 30.2
1895 Male, age 76, right hemisphere 36.6
2587 Male, age 74, left hemisphere 36.1
2668 Female, age 75, unknown 33.2
1913 Female, age 42, unknown 32.6
1839 Male, age 51, unknown 31.4
1995 Male, age 72, unknown 29.8
1796 Male, age 53, unknown 28.1
2087 Female, age 72, unknown 27.9
2261 Male, age 18, unknown 27.2
2664 Male, age 75, both hemispheres 19.6
Ventral tegmental area
nTPM: 34.2
2410 Female, age 72, unknown 41.1
2223 Female, age 72, unknown 38.0
2218 Male, age 76, both hemispheres 34.3
1915 Female, age 42, unknown 33.7
1942 Male, age 51, unknown 30.4
2021 Male, age 53, unknown 27.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 18.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.1
Samples: 139

Max nTPM: 40.2
Min nTPM: 11.2
Std nTPM: 5.2
Median nTPM: 16.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 40.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 35.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 34.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 32.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 32.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 30.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 29.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 29.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 27.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 27.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 27.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 72.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.0
FF:10158-103A5 76 years, female 72.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 34.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.3
Samples: 4

Max nTPM: 39.8
Min nTPM: 26.6
Sample A Female 39.8
Sample B Female 31.7
Sample C Male 30.9
Sample D Male 26.6
Midbrain
nTPM: 34.1
Samples: 4

Max nTPM: 37.7
Min nTPM: 31.3
Sample A Female 37.7
Sample B Female 33.1
Sample C Male 34.2
Sample D Male 31.3
Periaqueductal gray
nTPM: 27.7
Samples: 3

Max nTPM: 29.3
Min nTPM: 26.5
Sample B Female 26.5
Sample C Male 29.3
Sample D Male 27.4
Superior colliculi
nTPM: 33.1
Samples: 4

Max nTPM: 35.1
Min nTPM: 31.1
Sample A Female 33.7
Sample B Female 31.1
Sample C Male 35.1
Sample D Male 32.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 53.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.1
Samples: 4

Max nTPM: 57.2
Min nTPM: 49.5
Sample A Male 49.5
Sample B Male 55.2
Sample C Female 57.2
Sample D Female 50.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
71378309 Antisense, RP_050426_03_E07, Mouse strain C57BL/6J (56 days, male) 1.8

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