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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SDC4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
149.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
633.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
458.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
449.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
418.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
417.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
382.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
378.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
375.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
365.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
364.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
361.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
350.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
350.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
338.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
335.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
333.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
333.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
322.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
313.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
300.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
299.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
290.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
287.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
287.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
285.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
280.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
278.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
276.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
270.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
265.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
265.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
264.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
264.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
263.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
262.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
256.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
254.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
254.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
251.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
250.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
249.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
249.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
248.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
245.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
244.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
244.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
243.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
242.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
241.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
241.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
240.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
240.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
239.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
238.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
238.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
237.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
235.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
232.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
232.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
232.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
232.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
230.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
225.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
223.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
222.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
221.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
219.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
217.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
217.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
216.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
216.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
215.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
211.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
211.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
210.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
210.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
210.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
209.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
208.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
206.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
205.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
205.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
203.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
203.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
202.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
198.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
198.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
198.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
197.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
197.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
196.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
194.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
194.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
193.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
191.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
189.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
188.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
188.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
188.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
188.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
188.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
186.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
186.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
186.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
184.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
183.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
182.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
181.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
180.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
180.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
179.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
177.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
177.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
177.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
177.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
176.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
176.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
175.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
174.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
173.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
173.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
173.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
171.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
169.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
168.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
167.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
166.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
165.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
164.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
164.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
163.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
162.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
162.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
162.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
162.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
161.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
161.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
159.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
158.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
157.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
157.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
157.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
156.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
155.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
154.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
154.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
153.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
152.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
152.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
151.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
151.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
151.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
150.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
150.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
150.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
149.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
149.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
148.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
148.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
148.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
147.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
145.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
145.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
144.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
143.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
140.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
140.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
139.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
139.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
139.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
138.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
138.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
137.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
137.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
136.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
136.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
135.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
135.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
135.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
133.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
133.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
132.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
131.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
130.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
129.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
128.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
128.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
128.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
127.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
127.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
126.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
126.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
125.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
124.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
124.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
123.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
123.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
123.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
122.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
120.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
120.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
119.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
119.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
119.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
118.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
118.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
117.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
116.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
115.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
115.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
114.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
113.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
113.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
113.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
113.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
112.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
111.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
111.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
111.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
111.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
110.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
110.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
110.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
109.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
109.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
108.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
108.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
108.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
107.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
107.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
107.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
107.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
106.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
104.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
104.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
103.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
103.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
102.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
102.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
102.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
102.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
102.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
101.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
101.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
101.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
100.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
98.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
98.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
98.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
98.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
97.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
97.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
97.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
97.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
97.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
96.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
96.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
93.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
93.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
93.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
93.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
92.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
91.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
91.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
91.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
91.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
91.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
90.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
90.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
90.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
89.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
89.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
89.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
88.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
86.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
86.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
86.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
86.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
84.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
83.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
81.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
81.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
80.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
80.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
79.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
79.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
78.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
78.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
78.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
77.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
77.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
77.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
76.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
74.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
74.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
74.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
74.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
72.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
70.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
70.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
70.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
69.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
68.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
68.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
67.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
67.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
67.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
67.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
66.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
66.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
65.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
65.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
64.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
64.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
63.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
63.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
63.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
62.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
61.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
61.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
60.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
60.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
60.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
59.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
58.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
58.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
57.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
55.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
55.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
55.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
53.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
52.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
52.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
52.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
51.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
49.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
48.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
48.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
46.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
46.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
45.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
44.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
43.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
43.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
42.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
41.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
40.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
39.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
39.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
35.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
32.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
30.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
29.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
25.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
24.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
21.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
20.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SDC4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
148.3
Number of samples
231
Samples
Sample
Description
TPM
DO23544
0 years, male, NA, stage:2, alive, 960 days
647.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
598.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
555.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
402.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
369.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
350.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
345.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
341.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
317.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
301.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
292.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
288.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
286.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
284.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
282.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
278.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
266.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
264.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
259.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
254.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
251.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
250.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
248.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
247.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
247.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
241.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
235.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
234.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
232.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
230.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
230.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
230.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
230.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
229.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
227.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
226.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
226.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
225.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
224.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
220.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
217.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
215.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
214.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
211.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
209.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
203.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
201.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
199.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
197.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
196.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
195.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
191.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
190.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
188.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
185.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
185.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
184.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
184.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
183.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
180.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
179.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
179.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
179.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
178.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
178.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
178.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
177.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
177.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
176.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
173.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
173.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
172.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
171.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
170.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
168.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
168.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
164.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
163.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
162.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
162.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
159.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
158.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
158.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
158.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
155.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
155.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
154.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
154.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
153.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
149.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
148.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
148.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
148.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
147.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
146.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
145.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
144.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
143.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
142.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
140.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
139.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
139.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
137.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
135.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
134.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
132.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
131.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
129.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
128.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
128.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
127.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
126.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
126.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
125.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
124.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
124.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
123.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
122.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
121.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
121.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
120.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
118.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
118.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
116.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
116.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
116.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
115.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
115.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
114.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
113.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
113.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
112.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
112.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
112.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
112.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
111.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
111.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
111.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
110.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
109.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
108.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
108.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
107.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
107.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
106.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
106.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
106.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
105.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
105.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
104.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
103.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
103.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
101.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
101.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
100.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
100.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
100.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
99.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
99.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
98.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
97.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
96.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
95.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
95.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
95.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
95.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
95.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
94.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
94.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
94.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
94.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
90.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
90.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
90.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
89.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
89.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
89.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
89.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
88.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
88.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
88.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
87.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
87.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
86.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
85.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
85.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
84.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
84.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
83.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
81.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
81.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
81.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
80.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
79.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
79.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
75.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
72.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
72.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
72.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
71.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
70.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
70.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
70.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
70.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
69.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
69.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
69.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
69.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
68.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
66.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
66.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
66.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
65.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
64.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
62.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
61.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
60.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
58.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
57.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
57.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
55.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
49.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
49.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
49.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
48.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
43.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
35.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
35.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
34.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
29.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
27.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
112
Tumor
1.8
471
Tumor
1.8
951
Tumor
1.7
483
Tumor
1.7
671
Tumor
1.6
385
Tumor
1.6
221
Tumor
1.5
1025
Tumor
1.4
883
Tumor
1.4
211
Tumor
1.4
425
Tumor
1.4
341
Tumor
1.3
817
Tumor
1.2
863
Tumor
1.1
445
Tumor
1.1
343
Tumor
1.0
477
Tumor
1.0
535
Tumor
1.0
881
Tumor
1.0
1031
Tumor
1.0
647
Tumor
1.0
975
Tumor
0.9
187
Tumor
0.9
823
Tumor
0.9
493
Tumor
0.9
131
Tumor
0.9
227
Tumor
0.9
641
Tumor
0.9
1021
Tumor
0.9
331
Tumor
0.8
563
Tumor
0.8
363
Tumor
0.8
545
Tumor
0.7
921
Tumor
0.7
271
Tumor
0.7
482
Normal
0.7
573
Tumor
0.7
877
Tumor
0.7
135
Tumor
0.6
967
Tumor
0.6
737
Tumor
0.6
937
Tumor
0.6
277
Tumor
0.6
977
Tumor
0.5
342
Normal
0.5
745
Tumor
0.5
443
Tumor
0.5
223
Tumor
0.5
983
Tumor
0.5
857
Tumor
0.5
913
Tumor
0.5
413
Tumor
0.5
421
Tumor
0.5
873
Tumor
0.5
635
Tumor
0.5
755
Tumor
0.4
393
Tumor
0.4
517
Tumor
0.4
428
Normal
0.4
465
Tumor
0.4
387
Tumor
0.4
435
Tumor
0.4
713
Tumor
0.3
375
Tumor
0.3
494
Normal
0.3
1015
Tumor
0.3
433
Tumor
0.3
481
Tumor
0.3
145
Tumor
0.3
1045
Tumor
0.3
617
Tumor
0.3
422
Normal
0.3
1041
Tumor
0.2
463
Tumor
0.2
923
Tumor
0.2
816
Normal
0.2
865
Tumor
0.2
478
Normal
0.2
352
Normal
0.2
411
Tumor
0.2
461
Tumor
0.2
851
Tumor
0.2
297
Tumor
0.2
911
Tumor
0.2
954
Normal
0.1
195
Tumor
0.1
455
Tumor
0.1
497
Tumor
0.1
444
Normal
0.1
965
Tumor
0.1
955
Tumor
0.1
944
Normal
0.1
285
Tumor
0.1
353
Tumor
0.1
415
Tumor
0.1
527
Tumor
0.1
515
Tumor
0.1
492
Normal
0.1
395
Tumor
0.0
976
Normal
0.0
498
Normal
0.0
391
Tumor
0.0
367
Tumor
0.0
984
Normal
0.0
431
Tumor
0.0
217
Tumor
0.0
185
Tumor
0.0
533
Tumor
0.0
473
Tumor
0.0
355
Tumor
0.0
553
Tumor
0.0
743
Tumor
-0.1
446
Normal
-0.1
721
Tumor
-0.1
862
Normal
-0.1
354
Normal
-0.1
628
Normal
-0.1
716
Normal
-0.1
814
Normal
-0.1
852
Normal
-0.1
432
Normal
-0.1
824
Normal
-0.1
685
Tumor
-0.1
777
Tumor
-0.1
1014
Normal
-0.1
968
Normal
-0.1
963
Tumor
-0.1
365
Tumor
-0.1
867
Tumor
-0.1
536
Normal
-0.1
434
Normal
-0.1
1013
Tumor
-0.1
424
Normal
-0.1
884
Normal
-0.2
1026
Normal
-0.2
467
Tumor
-0.2
861
Tumor
-0.2
938
Normal
-0.2
785
Tumor
-0.2
665
Tumor
-0.2
878
Normal
-0.2
866
Normal
-0.2
436
Normal
-0.2
695
Tumor
-0.2
672
Normal
-0.2
727
Tumor
-0.2
474
Normal
-0.2
557
Tumor
-0.2
127
Tumor
-0.2
916
Normal
-0.2
912
Normal
-0.2
137
Tumor
-0.2
815
Tumor
-0.2
427
Tumor
-0.2
361
Tumor
-0.3
364
Normal
-0.3
284
Normal
-0.3
231
Tumor
-0.3
742
Normal
-0.3
956
Normal
-0.3
958
Normal
-0.3
1032
Normal
-0.3
272
Normal
-0.3
982
Normal
-0.3
366
Normal
-0.3
312
Normal
-0.3
1043
Tumor
-0.3
943
Tumor
-0.3
664
Normal
-0.3
278
Normal
-0.3
212
Normal
-0.3
171
Tumor
-0.3
311
Tumor
-0.3
661
Tumor
-0.3
462
Normal
-0.4
1042
Normal
-0.4
356
Normal
-0.4
491
Tumor
-0.4
224
Normal
-0.4
538
Normal
-0.4
228
Normal
-0.4
232
Normal
-0.4
472
Normal
-0.4
358
Normal
-0.4
262
Normal
-0.4
1046
Normal
-0.4
567
Tumor
-0.4
392
Normal
-0.4
357
Tumor
-0.4
286
Normal
-0.4
384
Normal
-0.4
484
Normal
-0.4
394
Normal
-0.4
697
Tumor
-0.4
874
Normal
-0.4
268
Normal
-0.4
572
Normal
-0.4
924
Normal
-0.4
952
Normal
-0.4
147
Tumor
-0.4
568
Normal
-0.4
858
Normal
-0.4
452
Normal
-0.4
386
Normal
-0.4
663
Tumor
-0.4
298
Normal
-0.4
978
Normal
-0.4
124
Normal
-0.4
267
Tumor
-0.4
466
Normal
-0.4
525
Tumor
-0.4
524
Normal
-0.4
468
Normal
-0.4
416
Normal
-0.5
666
Normal
-0.5
746
Normal
-0.5
261
Tumor
-0.5
396
Normal
-0.5
636
Normal
-0.5
864
Normal
-0.5
423
Tumor
-0.5
141
Tumor
-0.5
534
Normal
-0.5
412
Normal
-0.5
426
Normal
-0.5
882
Normal
-0.5
513
Tumor
-0.5
528
Normal
-0.5
728
Normal
-0.5
925
Tumor
-0.5
1022
Normal
-0.5
1044
Normal
-0.5
648
Normal
-0.5
388
Normal
-0.5
488
Normal
-0.5
448
Normal
-0.5
351
Tumor
-0.5
744
Normal
-0.5
523
Tumor
-0.5
518
Normal
-0.5
332
Normal
-0.5
314
Normal
-0.5
546
Normal
-0.5
113
Tumor
-0.5
142
Normal
-0.6
526
Normal
-0.6
686
Normal
-0.6
714
Normal
-0.6
136
Normal
-0.6
786
Normal
-0.6
161
Tumor
-0.6
813
Tumor
-0.6
741
Tumor
-0.6
966
Normal
-0.6
558
Normal
-0.6
146
Normal
-0.6
868
Normal
-0.6
964
Normal
-0.6
376
Normal
-0.6
222
Normal
-0.6
516
Normal
-0.6
368
Normal
-0.6
123
Tumor
-0.6
615
Tumor
-0.6
914
Normal
-0.6
313
Tumor
-0.6
756
Normal
-0.6
344
Normal
-0.6
126
Normal
-0.6
642
Normal
-0.6
464
Normal
-0.6
414
Normal
-0.6
574
Normal
-0.7
192
Normal
-0.7
456
Normal
-0.7
132
Normal
-0.7
917
Tumor
-0.7
447
Tumor
-0.7
662
Normal
-0.7
191
Tumor
-0.7
1027
Tumor
-0.7
362
Normal
-0.7
981
Tumor
-0.7
537
Tumor
-0.7
696
Normal
-0.7
618
Normal
-0.7
627
Tumor
-0.7
138
Normal
-0.7
722
Normal
-0.7
514
Normal
-0.7
188
Normal
-0.7
258
Normal
-0.7
918
Normal
-0.7
738
Normal
-0.7
778
Normal
-0.7
1016
Normal
-0.7
383
Tumor
-0.7
922
Normal
-0.7
1028
Normal
-0.7
213
Tumor
-0.8
564
Normal
-0.8
214
Normal
-0.8
218
Normal
-0.8
328
Normal
-0.8
571
Tumor
-0.8
257
Tumor
-0.8
148
Normal
-0.8
915
Tumor
-0.8
926
Normal
-0.8
957
Tumor
-0.9
723
Tumor
-0.9
196
Normal
-0.9
698
Normal
-0.9
616
Normal
-0.9
554
Normal
-0.9
451
Tumor
-0.9
162
Normal
-0.9
111
Normal
-0.9
818
Normal
-0.9
283
Tumor
-0.9
186
Normal
-0.9
128
Normal
-0.9
715
Tumor
-0.9
114
Normal
-1.0
172
Normal
-1.0
327
Tumor
-1.0
487
Tumor
-1.0
953
Tumor
-1.1
724
Normal
-1.3
125
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.