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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB9A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
81.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
57.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
55.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
48.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
46.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
46.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
43.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
40.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
33.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
33.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
33.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
31.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
29.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
27.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
26.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
24.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
22.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
16.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB9A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.7
Number of samples
231
Samples
Sample
Description
TPM
DO45283
0 years, male, NA, stage:3, alive, 510 days
81.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
60.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
47.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
38.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
38.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
37.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
35.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
32.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
31.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
28.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
27.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
27.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
26.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
24.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
24.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
22.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
20.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
0.9
861
Tumor
0.7
557
Tumor
0.7
921
Tumor
0.7
125
Tumor
0.6
171
Tumor
0.5
471
Tumor
0.5
616
Normal
0.5
123
Tumor
0.5
746
Normal
0.5
354
Normal
0.4
573
Tumor
0.4
695
Tumor
0.4
342
Normal
0.4
1022
Normal
0.4
724
Normal
0.4
862
Normal
0.4
488
Normal
0.4
1031
Tumor
0.4
723
Tumor
0.3
261
Tumor
0.3
1046
Normal
0.3
742
Normal
0.3
716
Normal
0.3
343
Tumor
0.3
786
Normal
0.3
491
Tumor
0.3
647
Tumor
0.3
352
Normal
0.3
744
Normal
0.3
358
Normal
0.3
356
Normal
0.3
741
Tumor
0.3
882
Normal
0.3
481
Tumor
0.3
456
Normal
0.3
462
Normal
0.3
866
Normal
0.3
553
Tumor
0.3
824
Normal
0.3
698
Normal
0.3
685
Tumor
0.3
913
Tumor
0.3
912
Normal
0.3
451
Tumor
0.3
864
Normal
0.3
482
Normal
0.3
147
Tumor
0.3
914
Normal
0.2
874
Normal
0.2
785
Tumor
0.2
477
Tumor
0.2
466
Normal
0.2
344
Normal
0.2
362
Normal
0.2
484
Normal
0.2
1028
Normal
0.2
686
Normal
0.2
1014
Normal
0.2
525
Tumor
0.2
968
Normal
0.2
697
Tumor
0.2
851
Tumor
0.2
298
Normal
0.2
816
Normal
0.2
926
Normal
0.2
554
Normal
0.2
924
Normal
0.2
818
Normal
0.2
952
Normal
0.2
714
Normal
0.2
722
Normal
0.2
618
Normal
0.2
124
Normal
0.2
111
Normal
0.2
1013
Tumor
0.2
436
Normal
0.2
713
Tumor
0.2
728
Normal
0.2
271
Tumor
0.2
715
Tumor
0.2
738
Normal
0.2
868
Normal
0.2
412
Normal
0.2
884
Normal
0.2
756
Normal
0.2
572
Normal
0.2
778
Normal
0.2
364
Normal
0.2
464
Normal
0.2
978
Normal
0.2
432
Normal
0.2
366
Normal
0.2
487
Tumor
0.2
648
Normal
0.2
571
Tumor
0.2
448
Normal
0.1
478
Normal
0.1
915
Tumor
0.1
1032
Normal
0.1
568
Normal
0.1
494
Normal
0.1
534
Normal
0.1
664
Normal
0.1
976
Normal
0.1
916
Normal
0.1
858
Normal
0.1
964
Normal
0.1
148
Normal
0.1
1042
Normal
0.1
1026
Normal
0.1
186
Normal
0.1
376
Normal
0.1
721
Tumor
0.1
434
Normal
0.1
666
Normal
0.1
472
Normal
0.1
641
Tumor
0.1
232
Normal
0.1
257
Tumor
0.1
984
Normal
0.1
1025
Tumor
0.1
563
Tumor
0.1
955
Tumor
0.1
385
Tumor
0.1
696
Normal
0.1
958
Normal
0.1
395
Tumor
0.1
422
Normal
0.1
878
Normal
0.1
128
Normal
0.1
363
Tumor
0.1
172
Normal
0.1
114
Normal
0.1
966
Normal
0.1
1044
Normal
0.1
627
Tumor
0.1
922
Normal
0.1
546
Normal
0.1
221
Tumor
0.1
445
Tumor
0.1
314
Normal
0.1
528
Normal
0.1
918
Normal
0.1
516
Normal
0.1
617
Tumor
0.1
867
Tumor
0.1
661
Tumor
0.1
428
Normal
0.1
514
Normal
0.1
272
Normal
0.1
368
Normal
0.1
815
Tumor
0.1
956
Normal
0.1
353
Tumor
0.1
196
Normal
0.1
498
Normal
0.1
492
Normal
0.1
278
Normal
0.1
162
Normal
0.1
258
Normal
0.1
231
Tumor
0.0
446
Normal
0.0
452
Normal
0.0
332
Normal
0.0
628
Normal
0.0
214
Normal
0.0
262
Normal
0.0
283
Tumor
0.0
954
Normal
0.0
426
Normal
0.0
421
Tumor
0.0
965
Tumor
0.0
465
Tumor
0.0
953
Tumor
0.0
727
Tumor
0.0
524
Normal
0.0
384
Normal
0.0
925
Tumor
0.0
222
Normal
0.0
755
Tumor
0.0
493
Tumor
0.0
284
Normal
0.0
392
Normal
0.0
467
Tumor
0.0
642
Normal
0.0
474
Normal
0.0
564
Normal
0.0
538
Normal
0.0
424
Normal
0.0
636
Normal
0.0
416
Normal
0.0
1016
Normal
0.0
745
Tumor
0.0
396
Normal
0.0
468
Normal
0.0
126
Normal
0.0
983
Tumor
0.0
852
Normal
0.0
127
Tumor
0.0
132
Normal
0.0
142
Normal
0.0
375
Tumor
0.0
982
Normal
0.0
537
Tumor
0.0
672
Normal
0.0
526
Normal
0.0
361
Tumor
0.0
394
Normal
0.0
386
Normal
0.0
975
Tumor
0.0
312
Normal
0.0
558
Normal
0.0
313
Tumor
0.0
923
Tumor
0.0
444
Normal
0.0
817
Tumor
0.0
388
Normal
0.0
228
Normal
0.0
574
Normal
0.0
286
Normal
0.0
938
Normal
0.0
268
Normal
0.0
212
Normal
-0.1
1043
Tumor
-0.1
136
Normal
-0.1
911
Tumor
-0.1
227
Tumor
-0.1
662
Normal
-0.1
411
Tumor
-0.1
1027
Tumor
-0.1
188
Normal
-0.1
433
Tumor
-0.1
341
Tumor
-0.1
131
Tumor
-0.1
435
Tumor
-0.1
192
Normal
-0.1
393
Tumor
-0.1
1045
Tumor
-0.1
813
Tumor
-0.1
391
Tumor
-0.1
777
Tumor
-0.1
415
Tumor
-0.1
218
Normal
-0.1
883
Tumor
-0.1
224
Normal
-0.1
277
Tumor
-0.1
567
Tumor
-0.1
328
Normal
-0.1
443
Tumor
-0.1
857
Tumor
-0.1
455
Tumor
-0.1
431
Tumor
-0.1
463
Tumor
-0.1
518
Normal
-0.1
447
Tumor
-0.1
944
Normal
-0.1
414
Normal
-0.2
187
Tumor
-0.2
814
Normal
-0.2
951
Tumor
-0.2
881
Tumor
-0.2
1021
Tumor
-0.2
138
Normal
-0.2
663
Tumor
-0.2
527
Tumor
-0.2
943
Tumor
-0.2
1015
Tumor
-0.2
536
Normal
-0.2
146
Normal
-0.2
461
Tumor
-0.2
963
Tumor
-0.2
355
Tumor
-0.2
195
Tumor
-0.2
615
Tumor
-0.2
351
Tumor
-0.2
937
Tumor
-0.2
185
Tumor
-0.2
161
Tumor
-0.3
483
Tumor
-0.3
113
Tumor
-0.3
513
Tumor
-0.3
1041
Tumor
-0.3
671
Tumor
-0.3
135
Tumor
-0.3
427
Tumor
-0.3
285
Tumor
-0.3
863
Tumor
-0.3
977
Tumor
-0.3
981
Tumor
-0.3
367
Tumor
-0.3
327
Tumor
-0.3
523
Tumor
-0.3
423
Tumor
-0.3
217
Tumor
-0.3
737
Tumor
-0.3
545
Tumor
-0.3
823
Tumor
-0.3
137
Tumor
-0.3
957
Tumor
-0.3
357
Tumor
-0.3
213
Tumor
-0.3
297
Tumor
-0.3
365
Tumor
-0.3
383
Tumor
-0.3
873
Tumor
-0.3
267
Tumor
-0.4
145
Tumor
-0.4
865
Tumor
-0.4
112
Tumor
-0.4
413
Tumor
-0.4
425
Tumor
-0.4
141
Tumor
-0.4
311
Tumor
-0.4
917
Tumor
-0.4
331
Tumor
-0.4
665
Tumor
-0.4
533
Tumor
-0.4
515
Tumor
-0.5
517
Tumor
-0.5
497
Tumor
-0.5
743
Tumor
-0.5
191
Tumor
-0.5
635
Tumor
-0.5
387
Tumor
-0.5
473
Tumor
-0.5
535
Tumor
-0.6
877
Tumor
-0.6
967
Tumor
-0.6
223
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
