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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OPTN is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
45.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
148.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
141.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
130.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
122.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
119.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
116.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
116.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
114.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
113.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
112.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
107.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
107.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
106.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
104.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
102.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
97.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
95.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
94.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
93.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
93.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
90.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
90.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
85.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
84.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
80.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
79.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
78.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
78.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
77.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
77.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
76.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
75.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
75.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
73.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
73.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
72.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
72.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
71.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
71.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
71.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
71.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
71.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
70.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
70.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
69.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
69.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
69.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
69.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
69.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
69.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
68.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
68.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
67.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
67.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
66.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
66.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
65.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
65.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
65.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
65.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
64.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
64.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
64.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
64.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
64.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
63.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
63.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
63.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
63.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
63.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
62.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
61.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
61.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
61.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
61.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
61.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
61.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
60.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
60.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
60.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
59.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
59.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
59.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
59.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
58.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
58.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
58.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
57.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
57.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
57.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
57.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
57.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
56.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
56.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
55.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
55.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
55.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
55.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
55.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
55.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
54.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
54.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
54.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
54.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
54.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
54.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
53.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
53.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
53.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
53.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
53.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
52.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
52.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
52.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
52.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
51.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
51.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
51.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
51.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
50.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
50.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
50.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
49.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
49.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
49.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
49.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
49.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
49.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
49.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
49.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
48.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
48.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
48.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
48.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
48.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
47.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
47.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
47.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
47.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
47.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
47.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
47.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
47.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
46.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
46.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
46.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
46.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
46.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
46.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
46.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
46.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
45.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
45.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
45.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
44.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
44.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
44.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
44.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
44.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
44.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
43.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
43.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
43.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
43.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
43.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
43.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
43.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
43.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
43.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
43.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
42.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
42.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
42.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
42.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
42.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
42.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
42.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
41.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
41.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
41.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
41.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
41.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
41.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
41.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
41.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
41.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
40.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
40.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
40.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
40.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
40.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
39.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
39.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
39.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
38.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
38.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
38.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
38.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
38.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
38.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
37.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
37.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
37.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
37.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
37.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
37.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
37.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
37.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
37.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
36.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
36.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
36.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
36.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
36.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
36.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
36.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
36.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
36.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
35.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
35.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
35.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
35.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
35.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
35.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
35.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
35.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
34.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
34.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
34.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
34.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
33.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
33.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
33.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
33.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
33.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
33.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
32.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
32.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
32.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
32.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
32.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
32.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
32.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
32.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
32.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
32.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
31.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
31.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
31.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
31.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
31.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
31.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
31.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
31.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
30.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
30.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
30.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
30.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
30.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
29.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
29.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
29.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
29.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
28.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
28.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
28.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
28.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
28.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
27.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
27.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
27.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
27.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
26.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
26.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
26.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
26.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
26.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
26.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
25.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
25.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
25.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
24.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
24.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
23.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
23.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
23.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
22.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
22.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
22.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
22.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
22.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
22.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
22.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
22.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
21.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
21.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
19.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
18.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
16.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OPTN is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.0
Number of samples
231
Samples
Sample
Description
TPM
DO45149
0 years, female, NA, stage:2, alive, 1260 days
158.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
135.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
112.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
97.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
87.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
86.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
86.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
81.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
79.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
79.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
75.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
74.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
73.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
73.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
71.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
70.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
70.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
70.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
69.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
68.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
66.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
66.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
65.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
64.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
64.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
63.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
63.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
62.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
62.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
59.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
59.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
59.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
59.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
58.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
57.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
57.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
55.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
55.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
54.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
53.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
53.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
52.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
52.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
51.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
51.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
50.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
49.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
49.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
49.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
48.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
48.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
48.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
48.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
47.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
47.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
47.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
45.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
45.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
45.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
45.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
45.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
44.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
44.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
44.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
44.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
44.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
44.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
44.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
44.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
44.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
43.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
43.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
43.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
43.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
42.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
42.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
42.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
42.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
42.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
42.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
41.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
41.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
41.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
41.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
41.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
41.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
41.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
40.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
40.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
40.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
40.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
40.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
40.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
40.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
40.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
40.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
40.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
40.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
40.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
39.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
39.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
38.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
38.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
38.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
38.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
38.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
38.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
38.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
38.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
38.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
38.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
37.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
37.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
37.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
37.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
37.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
37.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
37.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
37.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
36.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
36.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
36.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
35.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
35.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
35.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
35.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
34.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
34.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
34.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
34.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
34.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
34.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
34.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
34.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
34.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
33.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
33.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
33.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
33.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
33.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
33.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
33.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
33.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
32.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
32.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
32.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
32.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
32.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
32.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
32.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
31.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
31.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
31.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
31.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
31.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
30.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
30.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
30.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
30.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
29.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
29.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
28.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
28.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
28.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
27.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
27.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
27.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
26.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
26.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
26.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
26.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
26.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
25.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
25.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
25.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
24.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
23.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
23.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.7
1027
Tumor
1.6
685
Tumor
1.4
815
Tumor
1.1
663
Tumor
1.1
1025
Tumor
1.0
283
Tumor
0.9
724
Normal
0.9
483
Tumor
0.8
617
Tumor
0.7
223
Tumor
0.6
943
Tumor
0.6
953
Tumor
0.6
881
Tumor
0.6
863
Tumor
0.6
478
Normal
0.5
497
Tumor
0.5
966
Normal
0.5
383
Tumor
0.5
817
Tumor
0.5
913
Tumor
0.5
921
Tumor
0.5
553
Tumor
0.5
851
Tumor
0.5
492
Normal
0.5
211
Tumor
0.5
955
Tumor
0.5
527
Tumor
0.5
916
Normal
0.5
125
Tumor
0.5
1043
Tumor
0.4
777
Tumor
0.4
737
Tumor
0.4
868
Normal
0.4
978
Normal
0.4
415
Tumor
0.4
874
Normal
0.4
518
Normal
0.4
434
Normal
0.4
1021
Tumor
0.4
627
Tumor
0.4
471
Tumor
0.4
976
Normal
0.4
975
Tumor
0.4
188
Normal
0.4
212
Normal
0.4
536
Normal
0.4
498
Normal
0.4
814
Normal
0.3
313
Tumor
0.3
136
Normal
0.3
515
Tumor
0.3
1022
Normal
0.3
813
Tumor
0.3
786
Normal
0.3
1015
Tumor
0.3
545
Tumor
0.3
524
Normal
0.3
1042
Normal
0.3
123
Tumor
0.3
741
Tumor
0.3
413
Tumor
0.3
387
Tumor
0.3
963
Tumor
0.3
472
Normal
0.3
147
Tumor
0.3
755
Tumor
0.3
982
Normal
0.3
964
Normal
0.3
425
Tumor
0.3
444
Normal
0.3
1044
Normal
0.3
192
Normal
0.3
132
Normal
0.3
852
Normal
0.3
474
Normal
0.3
538
Normal
0.3
224
Normal
0.3
641
Tumor
0.3
746
Normal
0.3
528
Normal
0.3
463
Tumor
0.3
514
Normal
0.3
864
Normal
0.3
493
Tumor
0.3
365
Tumor
0.3
968
Normal
0.3
1026
Normal
0.3
516
Normal
0.3
364
Normal
0.3
956
Normal
0.3
145
Tumor
0.2
952
Normal
0.2
491
Tumor
0.2
126
Normal
0.2
328
Normal
0.2
447
Tumor
0.2
714
Normal
0.2
494
Normal
0.2
428
Normal
0.2
858
Normal
0.2
386
Normal
0.2
268
Normal
0.2
311
Tumor
0.2
221
Tumor
0.2
865
Tumor
0.2
297
Tumor
0.2
778
Normal
0.2
862
Normal
0.2
137
Tumor
0.2
393
Tumor
0.2
135
Tumor
0.2
738
Normal
0.2
284
Normal
0.2
728
Normal
0.2
138
Normal
0.2
1028
Normal
0.2
716
Normal
0.2
697
Tumor
0.2
455
Tumor
0.2
546
Normal
0.2
616
Normal
0.2
312
Normal
0.2
911
Tumor
0.2
482
Normal
0.2
958
Normal
0.2
628
Normal
0.2
721
Tumor
0.2
451
Tumor
0.2
461
Tumor
0.2
938
Normal
0.2
917
Tumor
0.2
146
Normal
0.2
523
Tumor
0.2
424
Normal
0.1
114
Normal
0.1
355
Tumor
0.1
866
Normal
0.1
487
Tumor
0.1
915
Tumor
0.1
785
Tumor
0.1
484
Normal
0.1
416
Normal
0.1
824
Normal
0.1
431
Tumor
0.1
698
Normal
0.1
722
Normal
0.1
867
Tumor
0.1
1032
Normal
0.1
1031
Tumor
0.1
558
Normal
0.1
823
Tumor
0.1
883
Tumor
0.1
742
Normal
0.1
412
Normal
0.1
1016
Normal
0.1
648
Normal
0.1
923
Tumor
0.1
436
Normal
0.1
924
Normal
0.1
926
Normal
0.1
756
Normal
0.1
1046
Normal
0.1
432
Normal
0.1
262
Normal
0.1
574
Normal
0.1
914
Normal
0.1
421
Tumor
0.1
642
Normal
0.1
857
Tumor
0.1
477
Tumor
0.1
217
Tumor
0.1
537
Tumor
0.1
362
Normal
0.1
664
Normal
0.1
258
Normal
0.1
257
Tumor
0.1
422
Normal
0.1
818
Normal
0.1
918
Normal
0.1
873
Tumor
0.1
951
Tumor
0.1
366
Normal
0.1
462
Normal
0.1
981
Tumor
0.1
356
Normal
0.1
1014
Normal
0.1
271
Tumor
0.1
517
Tumor
0.1
723
Tumor
0.1
922
Normal
0.1
882
Normal
0.1
696
Normal
0.1
884
Normal
0.0
228
Normal
0.0
861
Tumor
0.0
286
Normal
0.0
111
Normal
0.0
272
Normal
0.0
686
Normal
0.0
666
Normal
0.0
983
Tumor
0.0
816
Normal
0.0
388
Normal
0.0
456
Normal
0.0
142
Normal
0.0
661
Tumor
0.0
662
Normal
0.0
414
Normal
0.0
977
Tumor
0.0
213
Tumor
0.0
278
Normal
0.0
534
Normal
0.0
384
Normal
0.0
954
Normal
0.0
448
Normal
0.0
745
Tumor
0.0
446
Normal
0.0
466
Normal
0.0
878
Normal
0.0
468
Normal
0.0
298
Normal
0.0
564
Normal
0.0
186
Normal
0.0
513
Tumor
-0.1
526
Normal
-0.1
618
Normal
-0.1
396
Normal
-0.1
984
Normal
-0.1
394
Normal
-0.1
354
Normal
-0.1
222
Normal
-0.1
535
Tumor
-0.1
191
Tumor
-0.1
185
Tumor
-0.1
141
Tumor
-0.1
285
Tumor
-0.1
214
Normal
-0.1
695
Tumor
-0.1
563
Tumor
-0.1
187
Tumor
-0.1
368
Normal
-0.1
131
Tumor
-0.1
452
Normal
-0.1
172
Normal
-0.1
426
Normal
-0.1
464
Normal
-0.1
162
Normal
-0.1
937
Tumor
-0.1
443
Tumor
-0.1
713
Tumor
-0.1
171
Tumor
-0.1
488
Normal
-0.1
353
Tumor
-0.1
1045
Tumor
-0.1
358
Normal
-0.1
376
Normal
-0.1
314
Normal
-0.1
124
Normal
-0.1
148
Normal
-0.2
231
Tumor
-0.2
944
Normal
-0.2
967
Tumor
-0.2
554
Normal
-0.2
277
Tumor
-0.2
672
Normal
-0.2
912
Normal
-0.2
473
Tumor
-0.2
232
Normal
-0.2
332
Normal
-0.2
533
Tumor
-0.2
744
Normal
-0.2
113
Tumor
-0.2
615
Tumor
-0.2
363
Tumor
-0.2
331
Tumor
-0.2
128
Normal
-0.2
465
Tumor
-0.2
572
Normal
-0.2
567
Tumor
-0.2
227
Tumor
-0.2
411
Tumor
-0.2
647
Tumor
-0.2
568
Normal
-0.2
195
Tumor
-0.2
343
Tumor
-0.2
361
Tumor
-0.3
218
Normal
-0.3
344
Normal
-0.3
727
Tumor
-0.3
352
Normal
-0.3
392
Normal
-0.3
481
Tumor
-0.3
636
Normal
-0.3
161
Tumor
-0.3
525
Tumor
-0.3
427
Tumor
-0.3
957
Tumor
-0.3
1041
Tumor
-0.3
367
Tumor
-0.3
327
Tumor
-0.4
925
Tumor
-0.4
715
Tumor
-0.4
196
Normal
-0.4
573
Tumor
-0.4
467
Tumor
-0.4
385
Tumor
-0.4
423
Tumor
-0.5
395
Tumor
-0.5
433
Tumor
-0.5
635
Tumor
-0.5
342
Normal
-0.5
261
Tumor
-0.6
357
Tumor
-0.6
557
Tumor
-0.6
351
Tumor
-0.7
375
Tumor
-0.7
571
Tumor
-0.7
445
Tumor
-0.7
665
Tumor
-0.7
743
Tumor
-0.8
671
Tumor
-0.8
435
Tumor
-0.8
965
Tumor
-0.8
391
Tumor
-0.8
877
Tumor
-0.9
341
Tumor
-0.9
267
Tumor
-0.9
112
Tumor
-1.0
127
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
