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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COPA is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
66.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
315.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
200.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
186.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
184.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
179.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
164.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
162.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
161.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
151.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
147.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
146.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
143.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
140.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
138.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
138.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
137.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
137.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
134.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
133.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
131.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
131.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
129.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
127.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
126.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
126.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
124.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
123.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
121.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
120.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
118.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
117.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
117.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
115.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
115.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
113.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
109.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
109.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
107.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
107.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
107.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
106.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
105.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
104.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
104.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
103.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
103.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
100.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
100.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
99.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
97.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
97.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
97.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
96.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
96.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
96.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
95.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
93.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
92.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
92.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
92.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
91.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
91.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
90.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
89.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
89.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
88.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
87.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
86.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
86.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
86.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
84.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
84.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
84.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
83.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
83.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
82.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
82.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
82.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
82.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
82.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
81.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
81.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
81.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
81.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
81.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
80.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
80.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
80.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
80.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
80.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
79.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
79.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
79.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
79.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
78.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
78.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
78.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
78.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
77.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
77.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
77.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
77.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
77.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
76.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
76.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
76.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
76.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
76.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
76.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
75.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
75.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
75.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
75.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
75.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
75.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
75.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
75.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
75.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
75.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
74.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
74.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
73.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
73.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
73.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
72.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
72.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
72.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
72.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
72.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
71.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
71.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
71.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
70.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
69.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
69.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
69.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
69.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
69.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
69.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
68.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
68.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
68.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
68.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
67.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
67.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
67.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
67.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
66.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
66.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
66.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
66.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
66.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
66.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
66.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
66.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
65.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
65.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
65.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
65.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
65.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
65.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
65.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
64.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
64.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
64.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
64.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
64.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
64.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
64.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
64.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
63.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
63.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
63.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
63.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
63.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
63.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
63.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
62.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
62.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
62.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
62.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
62.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
61.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
61.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
61.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
61.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
60.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
60.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
60.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
60.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
59.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
59.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
59.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
59.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
59.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
59.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
59.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
59.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
58.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
58.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
57.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
57.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
56.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
56.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
56.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
56.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
56.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
56.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
55.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
55.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
55.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
55.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
54.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
54.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
54.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
54.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
54.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
53.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
53.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
53.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
53.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
53.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
53.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
53.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
52.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
52.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
52.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
52.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
52.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
52.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
52.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
52.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
52.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
52.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
51.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
51.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
51.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
51.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
51.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
51.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
50.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
50.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
50.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
49.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
49.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
49.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
49.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
49.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
49.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
49.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
49.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
48.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
48.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
47.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
47.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
47.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
47.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
47.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
46.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
46.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
46.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
45.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
45.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
45.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
45.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
45.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
45.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
45.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
44.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
44.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
44.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
44.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
43.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
43.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
43.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
43.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
43.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
43.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
43.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
43.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
42.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
42.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
42.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
42.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
42.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
41.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
41.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
41.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
40.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
40.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
40.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
40.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
39.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
39.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
39.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
39.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
39.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
38.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
38.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
37.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
37.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
37.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
37.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
37.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
36.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
36.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
36.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
36.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
36.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
36.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
36.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
35.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
35.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
34.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
34.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
34.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
34.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
34.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
33.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
33.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
32.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
32.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
31.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
31.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
31.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
31.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
31.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
30.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
29.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
29.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
29.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
28.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
27.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
27.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
27.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
27.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
26.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
25.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
24.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
23.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
23.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
21.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
20.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
20.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
20.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
19.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
14.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
13.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COPA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
47.4
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
198.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
132.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
121.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
109.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
107.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
104.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
103.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
101.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
96.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
95.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
94.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
90.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
85.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
84.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
83.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
81.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
81.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
79.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
76.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
76.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
75.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
74.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
72.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
71.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
71.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
71.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
70.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
70.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
69.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
69.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
69.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
67.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
67.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
67.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
66.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
66.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
66.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
64.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
64.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
64.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
64.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
63.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
63.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
63.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
62.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
60.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
59.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
59.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
59.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
59.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
58.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
58.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
57.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
57.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
57.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
56.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
56.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
56.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
56.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
56.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
56.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
55.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
54.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
54.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
54.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
54.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
54.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
53.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
53.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
53.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
53.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
52.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
51.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
51.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
50.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
50.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
50.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
50.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
50.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
49.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
49.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
49.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
49.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
49.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
49.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
49.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
49.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
48.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
48.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
48.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
48.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
47.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
47.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
47.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
47.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
47.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
47.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
46.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
46.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
46.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
46.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
46.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
46.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
46.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
45.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
45.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
45.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
45.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
44.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
44.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
44.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
44.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
44.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
43.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
43.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
43.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
43.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
42.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
42.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
42.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
42.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
42.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
41.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
41.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
41.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
41.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
41.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
41.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
41.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
40.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
40.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
40.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
40.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
39.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
39.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
39.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
38.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
38.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
38.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
38.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
37.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
37.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
37.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
37.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
37.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
37.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
37.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
37.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
36.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
36.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
36.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
36.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
36.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
36.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
36.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
36.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
35.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
35.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
35.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
35.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
35.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
35.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
35.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
35.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
34.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
34.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
34.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
33.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
33.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
33.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
33.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
32.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
32.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
32.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
32.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
32.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
32.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
32.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
32.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
32.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
32.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
31.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
31.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
31.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
30.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
30.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
29.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
29.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
29.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
27.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
27.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
27.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
26.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
26.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
26.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
25.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
24.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
24.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
24.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
24.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
23.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
327
Tumor
0.5
271
Tumor
0.5
1021
Tumor
0.5
1027
Tumor
0.4
743
Tumor
0.4
745
Tumor
0.4
937
Tumor
0.4
113
Tumor
0.4
147
Tumor
0.4
713
Tumor
0.4
1025
Tumor
0.4
851
Tumor
0.3
557
Tumor
0.3
145
Tumor
0.3
285
Tumor
0.3
135
Tumor
0.3
443
Tumor
0.3
721
Tumor
0.3
697
Tumor
0.3
527
Tumor
0.3
123
Tumor
0.3
125
Tumor
0.3
817
Tumor
0.3
257
Tumor
0.3
395
Tumor
0.3
1015
Tumor
0.3
951
Tumor
0.3
427
Tumor
0.3
523
Tumor
0.3
823
Tumor
0.2
217
Tumor
0.2
463
Tumor
0.2
353
Tumor
0.2
331
Tumor
0.2
911
Tumor
0.2
921
Tumor
0.2
865
Tumor
0.2
221
Tumor
0.2
724
Normal
0.2
913
Tumor
0.2
573
Tumor
0.2
467
Tumor
0.2
537
Tumor
0.2
451
Tumor
0.2
813
Tumor
0.2
213
Tumor
0.2
187
Tumor
0.2
191
Tumor
0.2
385
Tumor
0.2
111
Normal
0.2
815
Tumor
0.2
114
Normal
0.2
195
Tumor
0.2
223
Tumor
0.2
641
Tumor
0.2
983
Tumor
0.2
277
Tumor
0.2
925
Tumor
0.2
567
Tumor
0.2
227
Tumor
0.2
471
Tumor
0.2
617
Tumor
0.2
124
Normal
0.2
487
Tumor
0.2
917
Tumor
0.1
393
Tumor
0.1
171
Tumor
0.1
923
Tumor
0.1
421
Tumor
0.1
647
Tumor
0.1
481
Tumor
0.1
387
Tumor
0.1
368
Normal
0.1
218
Normal
0.1
755
Tumor
0.1
137
Tumor
0.1
136
Normal
0.1
746
Normal
0.1
262
Normal
0.1
343
Tumor
0.1
526
Normal
0.1
867
Tumor
0.1
967
Tumor
0.1
258
Normal
0.1
881
Tumor
0.1
728
Normal
0.1
141
Tumor
0.1
286
Normal
0.1
635
Tumor
0.1
685
Tumor
0.1
533
Tumor
0.1
462
Normal
0.1
952
Normal
0.1
868
Normal
0.1
648
Normal
0.1
636
Normal
0.1
738
Normal
0.1
975
Tumor
0.1
132
Normal
0.1
664
Normal
0.1
464
Normal
0.1
436
Normal
0.1
267
Tumor
0.1
545
Tumor
0.1
413
Tumor
0.1
528
Normal
0.1
665
Tumor
0.1
214
Normal
0.1
422
Normal
0.1
671
Tumor
0.1
162
Normal
0.1
283
Tumor
0.1
877
Tumor
0.1
452
Normal
0.1
396
Normal
0.1
148
Normal
0.1
742
Normal
0.1
185
Tumor
0.1
564
Normal
0.1
367
Tumor
0.1
435
Tumor
0.1
824
Normal
0.1
981
Tumor
0.1
563
Tumor
0.1
232
Normal
0.0
391
Tumor
0.0
126
Normal
0.0
955
Tumor
0.0
341
Tumor
0.0
414
Normal
0.0
727
Tumor
0.0
212
Normal
0.0
131
Tumor
0.0
222
Normal
0.0
268
Normal
0.0
474
Normal
0.0
138
Normal
0.0
1043
Tumor
0.0
965
Tumor
0.0
386
Normal
0.0
357
Tumor
0.0
383
Tumor
0.0
272
Normal
0.0
968
Normal
0.0
188
Normal
0.0
1026
Normal
0.0
392
Normal
0.0
426
Normal
0.0
434
Normal
0.0
433
Tumor
0.0
363
Tumor
0.0
278
Normal
0.0
553
Tumor
0.0
332
Normal
0.0
311
Tumor
0.0
314
Normal
0.0
128
Normal
0.0
461
Tumor
0.0
864
Normal
0.0
642
Normal
0.0
618
Normal
0.0
568
Normal
0.0
816
Normal
0.0
186
Normal
0.0
142
Normal
0.0
534
Normal
0.0
515
Tumor
0.0
466
Normal
0.0
1041
Tumor
0.0
228
Normal
0.0
518
Normal
0.0
661
Tumor
0.0
786
Normal
0.0
1028
Normal
0.0
1016
Normal
0.0
723
Tumor
0.0
558
Normal
0.0
666
Normal
0.0
858
Normal
0.0
172
Normal
0.0
778
Normal
0.0
455
Tumor
0.0
861
Tumor
0.0
814
Normal
0.0
344
Normal
0.0
362
Normal
0.0
477
Tumor
0.0
862
Normal
0.0
493
Tumor
0.0
1031
Tumor
0.0
127
Tumor
0.0
376
Normal
0.0
446
Normal
0.0
231
Tumor
0.0
662
Normal
0.0
196
Normal
0.0
874
Normal
0.0
863
Tumor
0.0
456
Normal
0.0
525
Tumor
0.0
497
Tumor
0.0
358
Normal
0.0
112
Tumor
0.0
977
Tumor
0.0
428
Normal
0.0
574
Normal
0.0
883
Tumor
0.0
356
Normal
0.0
472
Normal
0.0
628
Normal
0.0
482
Normal
0.0
261
Tumor
0.0
517
Tumor
0.0
412
Normal
0.0
468
Normal
0.0
284
Normal
0.0
483
Tumor
0.0
211
Tumor
0.0
424
Normal
0.0
514
Normal
0.0
297
Tumor
0.0
298
Normal
0.0
914
Normal
0.0
394
Normal
0.0
146
Normal
0.0
926
Normal
0.0
312
Normal
0.0
445
Tumor
0.0
388
Normal
0.0
943
Tumor
0.0
866
Normal
0.0
777
Tumor
-0.1
722
Normal
-0.1
714
Normal
-0.1
313
Tumor
-0.1
535
Tumor
-0.1
447
Tumor
-0.1
1022
Normal
-0.1
161
Tumor
-0.1
741
Tumor
-0.1
554
Normal
-0.1
546
Normal
-0.1
963
Tumor
-0.1
342
Normal
-0.1
715
Tumor
-0.1
918
Normal
-0.1
944
Normal
-0.1
352
Normal
-0.1
494
Normal
-0.1
616
Normal
-0.1
1044
Normal
-0.1
416
Normal
-0.1
192
Normal
-0.1
572
Normal
-0.1
411
Tumor
-0.1
852
Normal
-0.1
1014
Normal
-0.1
686
Normal
-0.1
365
Tumor
-0.1
878
Normal
-0.1
425
Tumor
-0.1
873
Tumor
-0.1
756
Normal
-0.1
351
Tumor
-0.1
957
Tumor
-0.1
696
Normal
-0.1
744
Normal
-0.1
663
Tumor
-0.1
432
Normal
-0.1
571
Tumor
-0.1
448
Normal
-0.1
366
Normal
-0.1
737
Tumor
-0.1
716
Normal
-0.1
1032
Normal
-0.1
964
Normal
-0.1
224
Normal
-0.1
615
Tumor
-0.1
328
Normal
-0.1
488
Normal
-0.1
361
Tumor
-0.1
984
Normal
-0.1
524
Normal
-0.1
978
Normal
-0.1
912
Normal
-0.1
916
Normal
-0.1
884
Normal
-0.1
354
Normal
-0.1
1046
Normal
-0.1
966
Normal
-0.1
857
Tumor
-0.1
375
Tumor
-0.1
882
Normal
-0.1
384
Normal
-0.1
698
Normal
-0.1
956
Normal
-0.1
922
Normal
-0.1
627
Tumor
-0.1
465
Tumor
-0.1
355
Tumor
-0.1
536
Normal
-0.1
484
Normal
-0.1
1042
Normal
-0.1
492
Normal
-0.1
976
Normal
-0.1
915
Tumor
-0.1
982
Normal
-0.2
1045
Tumor
-0.2
364
Normal
-0.2
431
Tumor
-0.2
924
Normal
-0.2
938
Normal
-0.2
672
Normal
-0.2
818
Normal
-0.2
491
Tumor
-0.2
423
Tumor
-0.2
1013
Tumor
-0.2
958
Normal
-0.2
444
Normal
-0.2
415
Tumor
-0.2
695
Tumor
-0.2
478
Normal
-0.2
538
Normal
-0.2
473
Tumor
-0.2
513
Tumor
-0.2
516
Normal
-0.2
498
Normal
-0.2
954
Normal
-0.2
785
Tumor
-0.3
953
Tumor
-0.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
