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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPS2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
145.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
102.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
85.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
80.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
72.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
71.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
71.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
70.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
69.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
68.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
64.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
63.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
63.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
63.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
63.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
62.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
62.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
62.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
61.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
61.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
60.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
60.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
60.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
59.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
58.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
58.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
57.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
57.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
55.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
54.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
54.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
53.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
52.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
52.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
52.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
52.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
51.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
51.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
51.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
51.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
51.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
50.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
50.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
50.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
50.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
50.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
50.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
50.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
50.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
50.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
50.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
50.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
49.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
49.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
49.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
49.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
48.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
48.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
47.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
47.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
46.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
46.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
46.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
46.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
46.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
46.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
45.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
45.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
45.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
45.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
45.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
45.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
44.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
44.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
44.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
44.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
44.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
44.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
44.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
44.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
44.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
44.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
44.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
44.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
43.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
43.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
43.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
43.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
42.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
42.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
42.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
42.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
42.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
42.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
42.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
42.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
42.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
41.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
41.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
41.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
41.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
41.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
41.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
41.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
41.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
41.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
41.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
41.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
40.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
40.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
40.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
40.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
40.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
40.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
39.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
39.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
39.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
39.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
39.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
39.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
39.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
39.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
39.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
39.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
39.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
39.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
38.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
38.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
38.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
38.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
38.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
38.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
38.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
38.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
38.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
38.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
38.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
38.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
38.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
38.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
37.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
37.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
37.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
37.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
37.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
37.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
37.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
37.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
37.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
36.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
36.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
36.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
36.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
36.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
36.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
36.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
36.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
36.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
35.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
35.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
35.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
35.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
35.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
35.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
35.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
35.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
35.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
35.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
35.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
35.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
34.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
34.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
34.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
34.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
34.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
34.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
34.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
34.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
34.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
34.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
34.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
34.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
34.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
34.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
33.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
33.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
33.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
33.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
33.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
33.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
33.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
33.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
33.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
33.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
32.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
32.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
32.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
32.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
32.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
32.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
32.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
32.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
32.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
32.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
32.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
31.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
31.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
31.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
31.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
31.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
31.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
31.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
31.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
31.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
31.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
30.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
30.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
30.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
30.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
30.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
30.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
30.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
30.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
30.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
30.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
30.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
30.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
29.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
29.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
29.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
29.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
29.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
29.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
29.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
29.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
29.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
28.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
28.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
28.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
28.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
28.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
28.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
28.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
28.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
28.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
28.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
28.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
28.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
28.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
28.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
27.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
27.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
27.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
27.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
27.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
27.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
26.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
26.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
26.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
26.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
26.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
26.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
26.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
25.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
25.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
25.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
25.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
25.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
25.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
24.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
24.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
24.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
23.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
23.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
23.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
22.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
22.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
21.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
20.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
20.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
18.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPS2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.4
Number of samples
231
Samples
Sample
Description
TPM
DO50802
0 years, male, NA, stage:2, alive, 930 days
65.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
62.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
57.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
54.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
53.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
53.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
52.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
51.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
50.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
49.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
47.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
47.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
46.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
46.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
45.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
44.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
44.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
42.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
41.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
41.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
41.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
40.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
40.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
39.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
38.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
38.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
38.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
38.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
37.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
37.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
37.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
36.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
35.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
35.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
35.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
34.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
34.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
34.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
34.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
34.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
34.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
33.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
32.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
32.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
32.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
32.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
32.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
32.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
32.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
32.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
31.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
31.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
31.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
31.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
31.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
30.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
30.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
30.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
30.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
29.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
29.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
29.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
29.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
29.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
28.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
28.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
28.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
28.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
28.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
28.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
28.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
28.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
28.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
27.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
27.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
27.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
27.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
27.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
27.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
26.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
26.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
26.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
25.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
25.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
24.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
24.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
23.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
23.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
22.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
22.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
21.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
20.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
411
Tumor
1.4
1041
Tumor
1.2
473
Tumor
1.2
537
Tumor
1.1
231
Tumor
1.0
525
Tumor
1.0
967
Tumor
1.0
435
Tumor
0.9
865
Tumor
0.9
171
Tumor
0.8
533
Tumor
0.8
393
Tumor
0.8
553
Tumor
0.8
227
Tumor
0.8
477
Tumor
0.8
423
Tumor
0.7
1021
Tumor
0.7
557
Tumor
0.7
571
Tumor
0.7
363
Tumor
0.7
361
Tumor
0.7
1025
Tumor
0.7
357
Tumor
0.7
483
Tumor
0.7
427
Tumor
0.6
741
Tumor
0.6
953
Tumor
0.6
713
Tumor
0.6
951
Tumor
0.6
965
Tumor
0.6
351
Tumor
0.6
355
Tumor
0.6
567
Tumor
0.6
663
Tumor
0.6
957
Tumor
0.6
267
Tumor
0.6
685
Tumor
0.5
745
Tumor
0.5
861
Tumor
0.5
123
Tumor
0.5
395
Tumor
0.5
367
Tumor
0.5
1031
Tumor
0.5
497
Tumor
0.5
127
Tumor
0.5
257
Tumor
0.5
353
Tumor
0.5
665
Tumor
0.5
981
Tumor
0.5
327
Tumor
0.5
313
Tumor
0.5
145
Tumor
0.4
743
Tumor
0.4
465
Tumor
0.4
147
Tumor
0.4
331
Tumor
0.4
915
Tumor
0.4
823
Tumor
0.4
1013
Tumor
0.4
755
Tumor
0.4
195
Tumor
0.4
491
Tumor
0.4
221
Tumor
0.4
715
Tumor
0.4
695
Tumor
0.4
187
Tumor
0.4
387
Tumor
0.4
983
Tumor
0.4
385
Tumor
0.4
635
Tumor
0.3
867
Tumor
0.3
937
Tumor
0.3
671
Tumor
0.3
213
Tumor
0.3
724
Normal
0.3
697
Tumor
0.3
271
Tumor
0.3
487
Tumor
0.3
365
Tumor
0.3
277
Tumor
0.2
527
Tumor
0.2
573
Tumor
0.2
391
Tumor
0.2
223
Tumor
0.2
554
Normal
0.2
877
Tumor
0.2
517
Tumor
0.2
851
Tumor
0.2
112
Tumor
0.2
451
Tumor
0.2
815
Tumor
0.2
883
Tumor
0.2
528
Normal
0.2
977
Tumor
0.2
341
Tumor
0.2
132
Normal
0.2
467
Tumor
0.2
911
Tumor
0.2
913
Tumor
0.2
493
Tumor
0.2
923
Tumor
0.2
196
Normal
0.2
413
Tumor
0.1
963
Tumor
0.1
191
Tumor
0.1
523
Tumor
0.1
135
Tumor
0.1
161
Tumor
0.1
926
Normal
0.1
428
Normal
0.1
136
Normal
0.1
148
Normal
0.1
285
Tumor
0.1
433
Tumor
0.1
661
Tumor
0.1
131
Tumor
0.1
647
Tumor
0.1
471
Tumor
0.1
188
Normal
0.1
535
Tumor
0.1
881
Tumor
0.1
113
Tumor
0.1
431
Tumor
0.1
463
Tumor
0.1
432
Normal
0.1
114
Normal
0.1
436
Normal
0.0
297
Tumor
0.0
727
Tumor
0.0
366
Normal
0.0
641
Tumor
0.0
964
Normal
0.0
564
Normal
0.0
944
Normal
0.0
482
Normal
0.0
484
Normal
0.0
424
Normal
0.0
375
Tumor
0.0
358
Normal
0.0
222
Normal
0.0
126
Normal
0.0
356
Normal
0.0
141
Tumor
0.0
162
Normal
0.0
545
Tumor
0.0
777
Tumor
0.0
128
Normal
0.0
462
Normal
0.0
172
Normal
0.0
212
Normal
0.0
916
Normal
0.0
785
Tumor
0.0
546
Normal
0.0
982
Normal
0.0
526
Normal
0.0
617
Tumor
0.0
474
Normal
0.0
534
Normal
0.0
388
Normal
0.0
146
Normal
0.0
214
Normal
0.0
464
Normal
0.0
728
Normal
0.0
364
Normal
-0.1
574
Normal
-0.1
328
Normal
-0.1
912
Normal
-0.1
925
Tumor
-0.1
272
Normal
-0.1
211
Tumor
-0.1
125
Tumor
-0.1
858
Normal
-0.1
857
Tumor
-0.1
228
Normal
-0.1
456
Normal
-0.1
422
Normal
-0.1
111
Normal
-0.1
284
Normal
-0.1
185
Tumor
-0.1
664
Normal
-0.1
396
Normal
-0.1
615
Tumor
-0.1
1043
Tumor
-0.1
416
Normal
-0.1
268
Normal
-0.1
1016
Normal
-0.1
878
Normal
-0.1
666
Normal
-0.1
817
Tumor
-0.1
383
Tumor
-0.1
868
Normal
-0.1
298
Normal
-0.1
866
Normal
-0.1
466
Normal
-0.1
314
Normal
-0.1
368
Normal
-0.1
568
Normal
-0.1
446
Normal
-0.1
978
Normal
-0.1
914
Normal
-0.1
1014
Normal
-0.1
786
Normal
-0.1
538
Normal
-0.1
278
Normal
-0.1
514
Normal
-0.1
434
Normal
-0.1
447
Tumor
-0.1
516
Normal
-0.1
696
Normal
-0.1
882
Normal
-0.1
138
Normal
-0.1
224
Normal
-0.1
414
Normal
-0.1
723
Tumor
-0.1
954
Normal
-0.2
873
Tumor
-0.2
572
Normal
-0.2
376
Normal
-0.2
956
Normal
-0.2
258
Normal
-0.2
472
Normal
-0.2
286
Normal
-0.2
217
Tumor
-0.2
952
Normal
-0.2
721
Tumor
-0.2
917
Tumor
-0.2
362
Normal
-0.2
824
Normal
-0.2
756
Normal
-0.2
343
Tumor
-0.2
976
Normal
-0.2
232
Normal
-0.2
444
Normal
-0.2
494
Normal
-0.2
722
Normal
-0.2
518
Normal
-0.2
394
Normal
-0.2
864
Normal
-0.2
384
Normal
-0.2
1032
Normal
-0.2
386
Normal
-0.2
192
Normal
-0.2
648
Normal
-0.2
481
Tumor
-0.2
488
Normal
-0.2
862
Normal
-0.2
261
Tumor
-0.2
1022
Normal
-0.2
124
Normal
-0.2
816
Normal
-0.2
468
Normal
-0.2
738
Normal
-0.2
137
Tumor
-0.2
884
Normal
-0.2
412
Normal
-0.2
938
Normal
-0.2
662
Normal
-0.2
426
Normal
-0.2
1046
Normal
-0.2
461
Tumor
-0.2
818
Normal
-0.2
1015
Tumor
-0.2
874
Normal
-0.2
312
Normal
-0.2
1028
Normal
-0.2
616
Normal
-0.2
628
Normal
-0.2
452
Normal
-0.2
958
Normal
-0.2
558
Normal
-0.3
262
Normal
-0.3
918
Normal
-0.3
354
Normal
-0.3
1026
Normal
-0.3
943
Tumor
-0.3
218
Normal
-0.3
392
Normal
-0.3
1042
Normal
-0.3
642
Normal
-0.3
975
Tumor
-0.3
778
Normal
-0.3
142
Normal
-0.3
186
Normal
-0.3
955
Tumor
-0.3
672
Normal
-0.3
636
Normal
-0.3
448
Normal
-0.3
714
Normal
-0.3
924
Normal
-0.3
922
Normal
-0.3
342
Normal
-0.3
344
Normal
-0.3
445
Tumor
-0.3
618
Normal
-0.3
984
Normal
-0.3
742
Normal
-0.3
311
Tumor
-0.3
852
Normal
-0.3
627
Tumor
-0.4
283
Tumor
-0.4
1045
Tumor
-0.4
415
Tumor
-0.4
425
Tumor
-0.4
968
Normal
-0.4
746
Normal
-0.4
332
Normal
-0.4
352
Normal
-0.4
1044
Normal
-0.4
455
Tumor
-0.4
698
Normal
-0.4
513
Tumor
-0.4
478
Normal
-0.4
563
Tumor
-0.4
498
Normal
-0.4
686
Normal
-0.4
524
Normal
-0.4
515
Tumor
-0.4
966
Normal
-0.5
737
Tumor
-0.5
814
Normal
-0.5
716
Normal
-0.5
813
Tumor
-0.5
421
Tumor
-0.6
443
Tumor
-0.6
492
Normal
-0.6
744
Normal
-0.7
536
Normal
-0.7
863
Tumor
-0.7
1027
Tumor
-0.8
921
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
