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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM54 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
325.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
182.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
112.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
95.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
94.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
85.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
82.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
77.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
75.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
73.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
73.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
72.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
68.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
67.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
63.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
62.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
61.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
60.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
58.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
56.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
55.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
55.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
54.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
54.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
52.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
48.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
48.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
47.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
45.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
44.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
42.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
41.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
41.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
40.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
38.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
38.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
38.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
38.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
37.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
37.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
37.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
34.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
34.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
30.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
30.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
30.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
29.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
29.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
28.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
27.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
26.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
25.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
24.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
23.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
23.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
20.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
19.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
19.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
15.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM54 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.0
Number of samples
231
Samples
Sample
Description
TPM
DO45287
0 years, male, NA, stage:1, alive, 390 days
158.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
140.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
92.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
82.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
71.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
70.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
66.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
64.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
55.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
54.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
51.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
48.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
41.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
40.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
37.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
36.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
34.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
32.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
32.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
29.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
23.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
23.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
