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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CSTA is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
152.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
147.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
145.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
125.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
123.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
120.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
116.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
115.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
110.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
110.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
108.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
105.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
97.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
91.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
90.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
88.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
82.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
78.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
77.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
77.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
77.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
75.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
74.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
74.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
73.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
73.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
73.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
73.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
72.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
71.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
70.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
70.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
68.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
67.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
67.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
67.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
65.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
65.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
64.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
63.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
62.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
61.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
60.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
60.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
59.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
59.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
58.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
57.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
57.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
57.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
56.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
54.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
53.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
53.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
52.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
51.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
50.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
50.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
50.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
50.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
49.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
49.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
47.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
47.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
47.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
46.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
46.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
45.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
44.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
44.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
44.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
44.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
43.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
43.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
43.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
42.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
42.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
42.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
41.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
40.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
40.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
40.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
40.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
40.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
39.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
39.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
38.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
38.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
38.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
37.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
36.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
36.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
36.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
36.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
36.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
36.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
36.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
36.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
35.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
35.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
35.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
34.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
34.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
34.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
33.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
33.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
33.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
33.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
33.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
32.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
31.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
31.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
31.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
31.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
31.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
31.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
30.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
30.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
29.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
29.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
29.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
29.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
28.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
28.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
28.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
28.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
27.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
27.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
27.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
27.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
26.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
26.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
25.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
25.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
24.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
23.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
21.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
20.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
19.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
17.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
15.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
2.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CSTA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.8
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
2801.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
78.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
77.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
77.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
75.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
73.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
70.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
69.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
69.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
66.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
66.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
60.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
58.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
57.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
56.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
55.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
55.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
54.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
53.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
51.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
51.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
51.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
51.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
50.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
49.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
49.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
48.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
47.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
47.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
47.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
46.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
44.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
44.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
43.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
43.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
43.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
43.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
43.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
42.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
42.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
42.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
41.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
40.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
40.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
38.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
38.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
38.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
37.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
36.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
36.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
35.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
35.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
34.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
34.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
34.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
33.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
33.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
33.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
33.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
33.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
31.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
31.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
31.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
31.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
30.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
30.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
30.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
28.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
28.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
28.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
28.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
26.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
25.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
25.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
25.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
24.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
24.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
22.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
4.0
537
Tumor
2.5
957
Tumor
2.3
925
Tumor
1.9
1025
Tumor
1.9
487
Tumor
1.9
745
Tumor
1.9
481
Tumor
1.8
484
Normal
1.8
1013
Tumor
1.6
1043
Tumor
1.5
415
Tumor
1.5
523
Tumor
1.4
477
Tumor
1.4
533
Tumor
1.4
514
Normal
1.4
1045
Tumor
1.3
955
Tumor
1.3
1016
Normal
1.2
953
Tumor
1.2
911
Tumor
1.2
355
Tumor
1.2
868
Normal
1.1
918
Normal
1.1
471
Tumor
1.1
963
Tumor
1.0
695
Tumor
1.0
984
Normal
1.0
921
Tumor
1.0
517
Tumor
1.0
915
Tumor
1.0
363
Tumor
1.0
1041
Tumor
1.0
1032
Normal
0.9
916
Normal
0.9
912
Normal
0.9
535
Tumor
0.9
1031
Tumor
0.8
137
Tumor
0.8
777
Tumor
0.8
976
Normal
0.8
917
Tumor
0.7
913
Tumor
0.7
943
Tumor
0.7
755
Tumor
0.7
663
Tumor
0.6
1014
Normal
0.6
492
Normal
0.6
983
Tumor
0.6
172
Normal
0.6
553
Tumor
0.6
285
Tumor
0.5
518
Normal
0.5
361
Tumor
0.5
686
Normal
0.5
722
Normal
0.5
278
Normal
0.4
538
Normal
0.4
534
Normal
0.4
851
Tumor
0.4
536
Normal
0.4
978
Normal
0.4
737
Tumor
0.4
327
Tumor
0.4
923
Tumor
0.4
714
Normal
0.4
696
Normal
0.4
494
Normal
0.4
416
Normal
0.3
474
Normal
0.3
944
Normal
0.3
926
Normal
0.3
462
Normal
0.3
958
Normal
0.3
952
Normal
0.3
466
Normal
0.3
498
Normal
0.3
858
Normal
0.3
864
Normal
0.3
964
Normal
0.2
461
Tumor
0.2
525
Tumor
0.2
786
Normal
0.2
227
Tumor
0.2
423
Tumor
0.2
1046
Normal
0.2
136
Normal
0.2
491
Tumor
0.2
938
Normal
0.2
328
Normal
0.2
528
Normal
0.1
221
Tumor
0.1
746
Normal
0.1
647
Tumor
0.1
478
Normal
0.1
728
Normal
0.1
356
Normal
0.1
463
Tumor
0.1
142
Normal
0.1
515
Tumor
0.1
482
Normal
0.1
365
Tumor
0.1
443
Tumor
0.1
1022
Normal
0.1
817
Tumor
0.1
448
Normal
0.1
472
Normal
0.1
785
Tumor
0.0
436
Normal
0.0
131
Tumor
0.0
627
Tumor
0.0
162
Normal
0.0
975
Tumor
0.0
465
Tumor
0.0
376
Normal
0.0
488
Normal
0.0
954
Normal
0.0
422
Normal
0.0
866
Normal
0.0
922
Normal
0.0
387
Tumor
0.0
212
Normal
0.0
716
Normal
0.0
756
Normal
0.0
1042
Normal
-0.1
284
Normal
-0.1
863
Tumor
-0.1
968
Normal
-0.1
513
Tumor
-0.1
648
Normal
-0.1
982
Normal
-0.1
411
Tumor
-0.1
497
Tumor
-0.1
161
Tumor
-0.1
564
Normal
-0.2
914
Normal
-0.2
741
Tumor
-0.2
364
Normal
-0.2
823
Tumor
-0.2
526
Normal
-0.2
312
Normal
-0.2
546
Normal
-0.2
862
Normal
-0.2
884
Normal
-0.2
452
Normal
-0.2
524
Normal
-0.3
127
Tumor
-0.3
267
Tumor
-0.3
394
Normal
-0.3
816
Normal
-0.3
228
Normal
-0.3
1026
Normal
-0.3
396
Normal
-0.3
392
Normal
-0.3
1027
Tumor
-0.3
132
Normal
-0.3
977
Tumor
-0.3
447
Tumor
-0.3
271
Tumor
-0.3
778
Normal
-0.3
222
Normal
-0.3
444
Normal
-0.4
195
Tumor
-0.4
257
Tumor
-0.4
713
Tumor
-0.4
224
Normal
-0.4
824
Normal
-0.4
558
Normal
-0.4
1028
Normal
-0.4
138
Normal
-0.4
258
Normal
-0.4
545
Tumor
-0.4
268
Normal
-0.4
951
Tumor
-0.4
738
Normal
-0.4
882
Normal
-0.5
147
Tumor
-0.5
353
Tumor
-0.5
141
Tumor
-0.5
1044
Normal
-0.5
314
Normal
-0.5
384
Normal
-0.5
615
Tumor
-0.5
223
Tumor
-0.5
262
Normal
-0.6
424
Normal
-0.6
313
Tumor
-0.6
232
Normal
-0.6
432
Normal
-0.6
412
Normal
-0.6
1021
Tumor
-0.6
341
Tumor
-0.6
311
Tumor
-0.6
451
Tumor
-0.6
1015
Tumor
-0.6
874
Normal
-0.6
473
Tumor
-0.6
464
Normal
-0.6
857
Tumor
-0.6
421
Tumor
-0.6
283
Tumor
-0.6
272
Normal
-0.7
352
Normal
-0.7
966
Normal
-0.7
114
Normal
-0.7
435
Tumor
-0.7
956
Normal
-0.7
455
Tumor
-0.7
428
Normal
-0.7
967
Tumor
-0.7
924
Normal
-0.7
286
Normal
-0.7
446
Normal
-0.7
516
Normal
-0.7
852
Normal
-0.7
187
Tumor
-0.7
628
Normal
-0.7
297
Tumor
-0.7
113
Tumor
-0.8
366
Normal
-0.8
698
Normal
-0.8
331
Tumor
-0.8
191
Tumor
-0.8
414
Normal
-0.8
721
Tumor
-0.8
426
Normal
-0.9
332
Normal
-0.9
723
Tumor
-0.9
727
Tumor
-0.9
357
Tumor
-0.9
125
Tumor
-0.9
431
Tumor
-0.9
148
Normal
-0.9
616
Normal
-1.0
358
Normal
-1.0
383
Tumor
-1.0
388
Normal
-1.0
965
Tumor
-1.1
188
Normal
-1.1
568
Normal
-1.1
483
Tumor
-1.1
413
Tumor
-1.1
571
Tumor
-1.1
814
Normal
-1.1
196
Normal
-1.1
554
Normal
-1.1
981
Tumor
-1.1
386
Normal
-1.1
467
Tumor
-1.1
697
Tumor
-1.1
425
Tumor
-1.1
937
Tumor
-1.2
368
Normal
-1.2
666
Normal
-1.2
861
Tumor
-1.2
367
Tumor
-1.2
572
Normal
-1.2
468
Normal
-1.2
567
Tumor
-1.2
661
Tumor
-1.2
343
Tumor
-1.2
362
Normal
-1.2
715
Tumor
-1.2
818
Normal
-1.2
146
Normal
-1.2
434
Normal
-1.2
126
Normal
-1.3
813
Tumor
-1.3
456
Normal
-1.3
563
Tumor
-1.3
664
Normal
-1.3
128
Normal
-1.3
218
Normal
-1.3
217
Tumor
-1.4
618
Normal
-1.4
574
Normal
-1.4
375
Tumor
-1.4
145
Tumor
-1.4
883
Tumor
-1.5
391
Tumor
-1.5
186
Normal
-1.5
672
Normal
-1.5
881
Tumor
-1.5
493
Tumor
-1.5
185
Tumor
-1.5
873
Tumor
-1.6
527
Tumor
-1.6
433
Tumor
-1.6
744
Normal
-1.6
878
Normal
-1.6
636
Normal
-1.7
111
Normal
-1.7
344
Normal
-1.7
641
Tumor
-1.7
662
Normal
-1.8
573
Tumor
-1.8
867
Tumor
-1.8
135
Tumor
-1.8
665
Tumor
-1.9
354
Normal
-1.9
865
Tumor
-1.9
342
Normal
-1.9
642
Normal
-1.9
298
Normal
-1.9
742
Normal
-2.0
277
Tumor
-2.0
671
Tumor
-2.0
124
Normal
-2.0
685
Tumor
-2.0
724
Normal
-2.0
213
Tumor
-2.1
261
Tumor
-2.1
815
Tumor
-2.1
427
Tumor
-2.1
385
Tumor
-2.1
192
Normal
-2.1
214
Normal
-2.1
877
Tumor
-2.3
395
Tumor
-2.4
445
Tumor
-2.4
617
Tumor
-2.4
231
Tumor
-2.5
112
Tumor
-2.7
171
Tumor
-2.8
351
Tumor
-2.8
557
Tumor
-2.9
743
Tumor
-2.9
393
Tumor
-3.0
123
Tumor
-3.4
635
Tumor
-3.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
