We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LYPLA1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
104.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
92.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
80.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
77.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
77.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
75.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
74.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
69.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
68.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
67.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
65.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
65.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
64.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
63.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
61.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
61.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
61.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
60.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
60.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
60.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
58.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
58.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
57.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
57.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
57.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
56.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
56.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
56.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
56.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
56.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
55.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
54.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
54.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
54.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
54.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
53.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
53.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
53.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
52.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
52.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
51.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
51.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
51.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
50.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
49.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
49.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
49.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
49.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
49.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
48.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
48.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
48.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
47.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
47.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
46.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
46.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
46.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
46.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
46.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
46.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
45.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
45.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
44.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
44.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
44.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
44.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
44.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
43.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
43.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
43.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
43.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
42.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
42.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
42.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
41.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
41.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
41.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
41.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
41.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
40.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
40.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
40.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
40.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
39.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
39.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
39.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
38.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
38.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
38.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
38.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
38.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
38.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
38.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
38.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
37.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
37.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
37.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
37.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
37.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
37.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
37.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
37.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
36.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
36.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
36.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
35.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
35.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
35.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
35.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
35.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
35.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
35.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
34.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
34.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
34.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
34.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
34.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
34.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
34.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
34.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
33.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
33.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
33.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
33.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
33.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
33.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
33.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
33.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
32.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
32.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
32.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
32.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
32.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
32.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
32.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
32.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
32.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
31.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
31.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
31.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
31.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
31.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
31.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
31.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
31.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
31.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
30.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
30.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
30.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
30.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
30.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
29.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
29.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
29.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
29.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
28.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
28.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
28.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
28.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
28.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
28.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
28.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
28.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
28.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
27.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
27.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
27.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
27.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
27.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
27.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
27.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
27.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
26.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
26.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
26.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
26.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
26.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
26.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
25.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
25.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
24.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
24.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
24.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
24.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
23.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
23.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
23.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
23.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
23.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
23.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
22.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
22.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
22.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
22.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
21.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
21.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
21.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
21.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
20.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
20.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
19.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
18.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
17.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
17.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
15.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LYPLA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.6
Number of samples
231
Samples
Sample
Description
TPM
DO45169
0 years, male, NA, stage:3, alive, 1350 days
139.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
129.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
127.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
114.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
108.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
107.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
101.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
95.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
91.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
89.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
86.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
86.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
79.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
79.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
76.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
76.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
75.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
73.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
73.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
73.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
72.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
72.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
72.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
71.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
68.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
68.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
66.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
66.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
66.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
66.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
65.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
63.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
62.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
60.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
60.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
60.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
59.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
58.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
57.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
56.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
56.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
56.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
56.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
53.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
53.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
52.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
51.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
50.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
50.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
49.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
48.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
47.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
47.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
47.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
46.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
46.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
45.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
45.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
45.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
45.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
45.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
44.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
44.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
43.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
43.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
43.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
43.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
43.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
43.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
42.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
42.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
42.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
42.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
41.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
41.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
41.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
41.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
41.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
40.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
40.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
40.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
39.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
39.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
39.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
39.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
38.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
38.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
38.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
38.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
38.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
37.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
37.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
37.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
37.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
36.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
36.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
35.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
35.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
35.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
35.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
35.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
35.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
34.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
34.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
33.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
33.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
32.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
32.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
32.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
31.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
31.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
31.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
31.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
31.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
31.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
31.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
30.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
30.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
30.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
30.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
29.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
29.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
29.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
29.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
28.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
28.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
28.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
28.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
28.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
27.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
26.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
26.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
26.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
26.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
26.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
25.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
25.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
25.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
25.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
24.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
24.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
24.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
24.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
23.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
23.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
23.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
23.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
557
Tumor
1.6
627
Tumor
1.2
231
Tumor
1.1
641
Tumor
1.1
635
Tumor
0.9
271
Tumor
0.9
341
Tumor
0.8
423
Tumor
0.7
745
Tumor
0.7
185
Tumor
0.7
571
Tumor
0.6
465
Tumor
0.6
925
Tumor
0.6
427
Tumor
0.6
435
Tumor
0.6
137
Tumor
0.6
187
Tumor
0.5
1025
Tumor
0.5
361
Tumor
0.5
342
Normal
0.5
421
Tumor
0.5
452
Normal
0.5
823
Tumor
0.5
615
Tumor
0.4
393
Tumor
0.4
436
Normal
0.4
387
Tumor
0.4
443
Tumor
0.4
367
Tumor
0.4
162
Normal
0.4
471
Tumor
0.4
141
Tumor
0.4
172
Normal
0.4
191
Tumor
0.4
456
Normal
0.4
257
Tumor
0.4
358
Normal
0.4
433
Tumor
0.4
298
Normal
0.3
375
Tumor
0.3
186
Normal
0.3
113
Tumor
0.3
851
Tumor
0.3
746
Normal
0.3
422
Normal
0.3
426
Normal
0.3
222
Normal
0.3
642
Normal
0.3
285
Tumor
0.3
464
Normal
0.3
353
Tumor
0.3
127
Tumor
0.3
451
Tumor
0.3
867
Tumor
0.3
365
Tumor
0.3
196
Normal
0.3
744
Normal
0.3
715
Tumor
0.3
344
Normal
0.3
618
Normal
0.3
392
Normal
0.3
277
Tumor
0.3
648
Normal
0.3
111
Normal
0.3
258
Normal
0.3
742
Normal
0.3
468
Normal
0.2
567
Tumor
0.2
376
Normal
0.2
148
Normal
0.2
388
Normal
0.2
145
Tumor
0.2
272
Normal
0.2
755
Tumor
0.2
218
Normal
0.2
386
Normal
0.2
385
Tumor
0.2
665
Tumor
0.2
743
Tumor
0.2
636
Normal
0.2
1043
Tumor
0.2
466
Normal
0.2
147
Tumor
0.2
394
Normal
0.2
883
Tumor
0.2
463
Tumor
0.2
354
Normal
0.2
128
Normal
0.2
314
Normal
0.2
278
Normal
0.2
664
Normal
0.2
911
Tumor
0.2
515
Tumor
0.2
221
Tumor
0.2
132
Normal
0.2
232
Normal
0.2
368
Normal
0.2
332
Normal
0.2
366
Normal
0.2
432
Normal
0.1
262
Normal
0.1
666
Normal
0.1
786
Normal
0.1
214
Normal
0.1
446
Normal
0.1
396
Normal
0.1
414
Normal
0.1
662
Normal
0.1
114
Normal
0.1
138
Normal
0.1
937
Tumor
0.1
813
Tumor
0.1
914
Normal
0.1
424
Normal
0.1
124
Normal
0.1
112
Tumor
0.1
136
Normal
0.1
685
Tumor
0.1
425
Tumor
0.1
362
Normal
0.1
877
Tumor
0.1
352
Normal
0.1
312
Normal
0.1
564
Normal
0.1
223
Tumor
0.1
462
Normal
0.1
1041
Tumor
0.1
384
Normal
0.1
568
Normal
0.1
434
Normal
0.1
785
Tumor
0.1
756
Normal
0.1
461
Tumor
0.1
537
Tumor
0.1
331
Tumor
0.1
1021
Tumor
0.1
428
Normal
0.1
146
Normal
0.1
188
Normal
0.0
738
Normal
0.0
268
Normal
0.0
952
Normal
0.0
818
Normal
0.0
873
Tumor
0.0
982
Normal
0.0
616
Normal
0.0
1016
Normal
0.0
778
Normal
0.0
195
Tumor
0.0
126
Normal
0.0
517
Tumor
0.0
411
Tumor
0.0
874
Normal
0.0
628
Normal
0.0
698
Normal
0.0
261
Tumor
0.0
161
Tumor
0.0
862
Normal
0.0
313
Tumor
0.0
921
Tumor
0.0
563
Tumor
0.0
297
Tumor
0.0
864
Normal
0.0
487
Tumor
-0.1
383
Tumor
-0.1
723
Tumor
-0.1
672
Normal
-0.1
527
Tumor
-0.1
878
Normal
-0.1
981
Tumor
-0.1
722
Normal
-0.1
574
Normal
-0.1
863
Tumor
-0.1
467
Tumor
-0.1
213
Tumor
-0.1
286
Normal
-0.1
192
Normal
-0.1
866
Normal
-0.1
1027
Tumor
-0.1
513
Tumor
-0.1
912
Normal
-0.1
1026
Normal
-0.1
858
Normal
-0.1
882
Normal
-0.1
123
Tumor
-0.1
617
Tumor
-0.1
444
Normal
-0.1
881
Tumor
-0.1
1022
Normal
-0.1
824
Normal
-0.1
975
Tumor
-0.2
391
Tumor
-0.2
938
Normal
-0.2
477
Tumor
-0.2
554
Normal
-0.2
217
Tumor
-0.2
868
Normal
-0.2
228
Normal
-0.2
815
Tumor
-0.2
814
Normal
-0.2
955
Tumor
-0.2
1045
Tumor
-0.2
741
Tumor
-0.2
816
Normal
-0.2
861
Tumor
-0.2
671
Tumor
-0.2
1014
Normal
-0.2
984
Normal
-0.2
356
Normal
-0.2
728
Normal
-0.2
553
Tumor
-0.2
721
Tumor
-0.2
525
Tumor
-0.2
966
Normal
-0.2
817
Tumor
-0.2
472
Normal
-0.2
412
Normal
-0.2
327
Tumor
-0.2
448
Normal
-0.2
915
Tumor
-0.2
395
Tumor
-0.2
474
Normal
-0.2
538
Normal
-0.2
956
Normal
-0.2
445
Tumor
-0.3
518
Normal
-0.3
697
Tumor
-0.3
526
Normal
-0.3
954
Normal
-0.3
416
Normal
-0.3
413
Tumor
-0.3
852
Normal
-0.3
481
Tumor
-0.3
142
Normal
-0.3
523
Tumor
-0.3
572
Normal
-0.3
135
Tumor
-0.3
944
Normal
-0.3
1028
Normal
-0.3
363
Tumor
-0.3
857
Tumor
-0.3
482
Normal
-0.3
1046
Normal
-0.3
497
Tumor
-0.3
284
Normal
-0.3
714
Normal
-0.3
267
Tumor
-0.3
978
Normal
-0.3
727
Tumor
-0.3
968
Normal
-0.3
1042
Normal
-0.3
455
Tumor
-0.3
1044
Normal
-0.3
534
Normal
-0.3
488
Normal
-0.3
528
Normal
-0.4
884
Normal
-0.4
224
Normal
-0.4
558
Normal
-0.4
328
Normal
-0.4
965
Tumor
-0.4
125
Tumor
-0.4
976
Normal
-0.4
777
Tumor
-0.4
737
Tumor
-0.4
1032
Normal
-0.4
343
Tumor
-0.4
977
Tumor
-0.4
924
Normal
-0.4
431
Tumor
-0.4
357
Tumor
-0.4
963
Tumor
-0.4
926
Normal
-0.4
516
Normal
-0.4
696
Normal
-0.4
663
Tumor
-0.4
964
Normal
-0.4
546
Normal
-0.4
1031
Tumor
-0.4
913
Tumor
-0.4
716
Normal
-0.4
923
Tumor
-0.4
686
Normal
-0.5
514
Normal
-0.5
171
Tumor
-0.5
364
Normal
-0.5
283
Tumor
-0.5
524
Normal
-0.5
484
Normal
-0.5
695
Tumor
-0.5
227
Tumor
-0.5
351
Tumor
-0.5
922
Normal
-0.5
573
Tumor
-0.5
494
Normal
-0.5
951
Tumor
-0.5
311
Tumor
-0.6
1013
Tumor
-0.6
1015
Tumor
-0.6
724
Normal
-0.6
131
Tumor
-0.6
917
Tumor
-0.6
983
Tumor
-0.6
967
Tumor
-0.6
498
Normal
-0.6
713
Tumor
-0.6
958
Normal
-0.6
865
Tumor
-0.6
918
Normal
-0.6
212
Normal
-0.6
492
Normal
-0.6
661
Tumor
-0.6
647
Tumor
-0.6
478
Normal
-0.6
473
Tumor
-0.7
491
Tumor
-0.7
916
Normal
-0.7
415
Tumor
-0.7
355
Tumor
-0.7
957
Tumor
-0.8
493
Tumor
-0.8
483
Tumor
-0.9
447
Tumor
-0.9
211
Tumor
-0.9
943
Tumor
-0.9
533
Tumor
-1.0
953
Tumor
-1.0
536
Normal
-1.0
535
Tumor
-1.2
545
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
