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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TGFBI is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
143.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1722.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1299.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
712.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
659.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
617.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
511.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
472.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
457.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
451.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
442.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
436.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
428.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
380.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
366.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
365.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
356.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
354.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
352.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
336.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
331.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
331.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
319.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
318.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
301.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
294.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
276.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
273.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
273.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
272.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
270.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
258.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
257.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
256.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
255.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
251.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
246.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
245.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
244.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
243.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
242.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
241.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
240.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
240.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
237.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
236.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
235.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
232.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
231.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
230.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
229.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
228.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
224.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
224.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
223.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
223.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
222.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
221.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
220.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
220.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
218.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
217.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
217.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
216.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
215.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
210.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
208.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
207.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
206.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
206.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
205.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
204.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
204.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
203.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
201.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
201.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
199.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
198.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
194.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
194.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
193.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
191.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
191.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
185.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
184.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
184.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
184.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
183.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
180.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
179.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
175.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
174.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
174.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
173.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
172.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
170.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
169.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
169.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
168.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
167.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
166.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
165.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
165.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
165.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
164.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
164.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
160.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
156.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
155.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
154.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
154.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
152.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
152.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
152.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
151.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
149.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
148.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
147.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
147.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
147.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
146.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
146.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
145.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
145.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
141.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
140.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
140.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
140.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
139.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
139.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
139.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
138.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
137.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
135.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
134.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
133.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
133.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
132.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
130.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
130.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
130.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
130.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
129.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
129.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
128.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
128.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
128.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
126.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
124.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
124.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
123.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
123.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
123.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
122.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
122.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
119.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
117.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
116.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
113.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
113.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
112.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
111.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
111.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
111.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
111.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
111.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
111.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
110.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
110.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
110.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
110.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
110.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
109.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
109.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
109.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
109.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
109.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
108.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
108.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
107.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
107.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
107.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
107.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
106.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
106.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
106.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
105.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
105.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
105.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
104.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
104.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
104.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
103.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
103.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
103.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
102.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
101.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
100.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
100.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
100.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
100.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
99.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
99.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
99.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
99.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
99.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
98.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
97.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
97.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
97.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
97.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
96.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
95.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
95.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
95.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
94.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
94.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
94.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
93.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
93.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
92.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
92.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
92.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
91.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
91.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
91.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
90.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
90.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
89.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
89.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
89.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
89.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
89.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
88.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
88.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
88.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
88.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
88.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
87.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
87.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
86.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
85.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
84.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
83.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
83.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
82.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
82.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
81.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
81.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
80.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
80.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
80.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
80.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
79.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
79.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
79.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
79.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
79.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
79.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
78.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
78.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
77.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
76.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
76.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
76.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
75.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
74.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
74.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
74.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
73.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
72.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
72.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
71.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
71.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
68.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
68.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
68.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
67.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
67.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
67.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
66.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
65.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
65.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
65.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
65.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
65.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
64.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
64.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
64.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
63.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
62.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
62.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
62.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
62.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
61.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
61.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
61.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
60.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
60.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
59.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
58.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
58.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
58.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
57.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
56.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
56.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
54.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
54.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
54.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
53.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
52.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
52.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
52.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
51.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
51.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
50.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
47.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
47.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
46.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
46.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
46.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
45.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
45.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
45.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
45.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
44.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
43.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
42.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
42.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
41.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
41.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
41.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
40.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
40.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
39.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
39.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
39.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
38.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
38.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
37.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
37.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
36.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
36.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
36.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
35.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
34.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
34.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
33.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
31.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
31.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
30.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
28.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
26.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
24.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
23.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
19.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TGFBI is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
128.7
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
603.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
410.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
356.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
345.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
332.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
328.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
315.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
301.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
299.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
296.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
296.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
287.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
285.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
283.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
271.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
269.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
266.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
259.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
258.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
254.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
251.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
247.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
244.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
243.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
243.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
231.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
229.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
226.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
225.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
222.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
221.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
220.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
219.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
217.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
213.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
210.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
204.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
202.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
198.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
196.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
193.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
192.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
192.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
191.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
188.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
184.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
181.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
178.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
175.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
174.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
173.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
171.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
171.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
171.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
170.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
168.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
168.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
165.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
165.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
164.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
162.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
160.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
160.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
158.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
158.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
156.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
155.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
154.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
151.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
147.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
147.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
146.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
145.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
143.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
142.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
142.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
140.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
140.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
140.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
139.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
136.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
136.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
135.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
133.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
131.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
130.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
128.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
126.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
126.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
123.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
122.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
122.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
121.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
121.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
121.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
120.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
120.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
119.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
119.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
118.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
117.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
112.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
112.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
112.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
111.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
111.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
111.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
111.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
111.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
110.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
110.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
110.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
110.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
109.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
109.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
108.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
108.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
106.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
105.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
105.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
104.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
104.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
103.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
99.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
99.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
99.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
99.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
99.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
98.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
97.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
96.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
96.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
95.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
95.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
93.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
92.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
92.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
92.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
91.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
90.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
89.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
89.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
89.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
89.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
88.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
88.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
87.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
86.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
85.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
85.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
84.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
84.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
84.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
83.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
83.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
82.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
82.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
82.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
81.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
80.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
80.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
79.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
79.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
79.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
79.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
78.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
77.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
77.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
76.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
75.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
75.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
74.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
72.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
72.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
71.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
70.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
70.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
70.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
69.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
68.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
68.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
67.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
66.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
66.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
63.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
61.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
61.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
61.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
61.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
61.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
60.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
60.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
58.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
58.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
58.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
57.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
56.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
55.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
55.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
55.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
55.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
55.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
54.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
54.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
54.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
52.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
51.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
51.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
49.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
48.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
48.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
47.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
47.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
47.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
45.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
45.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
43.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
43.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
40.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
39.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
39.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
36.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
35.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
34.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
33.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
31.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
223
Tumor
1.5
355
Tumor
1.4
671
Tumor
1.3
283
Tumor
1.2
343
Tumor
1.2
545
Tumor
1.2
455
Tumor
1.1
375
Tumor
1.1
877
Tumor
1.0
421
Tumor
1.0
425
Tumor
1.0
192
Normal
0.7
297
Tumor
0.7
311
Tumor
0.7
188
Normal
0.7
563
Tumor
0.6
538
Normal
0.6
137
Tumor
0.6
268
Normal
0.6
715
Tumor
0.6
478
Normal
0.6
145
Tumor
0.6
641
Tumor
0.5
535
Tumor
0.5
713
Tumor
0.5
363
Tumor
0.5
483
Tumor
0.5
135
Tumor
0.5
434
Normal
0.5
385
Tumor
0.5
975
Tumor
0.5
444
Normal
0.5
817
Tumor
0.5
224
Normal
0.5
958
Normal
0.5
146
Normal
0.5
284
Normal
0.5
126
Normal
0.5
384
Normal
0.4
517
Tumor
0.4
878
Normal
0.4
386
Normal
0.4
214
Normal
0.4
185
Tumor
0.4
823
Tumor
0.4
331
Tumor
0.4
672
Normal
0.4
161
Tumor
0.4
364
Normal
0.3
883
Tumor
0.3
813
Tumor
0.3
354
Normal
0.3
213
Tumor
0.3
516
Normal
0.3
195
Tumor
0.3
921
Tumor
0.3
387
Tumor
0.3
515
Tumor
0.3
916
Normal
0.3
498
Normal
0.3
443
Tumor
0.3
615
Tumor
0.3
574
Normal
0.3
365
Tumor
0.3
362
Normal
0.3
448
Normal
0.3
124
Normal
0.3
536
Normal
0.2
196
Normal
0.2
217
Tumor
0.2
187
Tumor
0.2
1042
Normal
0.2
976
Normal
0.2
627
Tumor
0.2
665
Tumor
0.2
874
Normal
0.2
383
Tumor
0.2
647
Tumor
0.2
447
Tumor
0.2
881
Tumor
0.2
422
Normal
0.2
228
Normal
0.2
278
Normal
0.2
463
Tumor
0.2
191
Tumor
0.2
312
Normal
0.1
416
Normal
0.1
394
Normal
0.1
524
Normal
0.1
863
Tumor
0.1
1031
Tumor
0.1
666
Normal
0.1
344
Normal
0.1
816
Normal
0.1
262
Normal
0.1
162
Normal
0.1
461
Tumor
0.1
963
Tumor
0.1
956
Normal
0.1
814
Normal
0.1
917
Tumor
0.1
954
Normal
0.1
697
Tumor
0.1
138
Normal
0.1
277
Tumor
0.1
232
Normal
0.1
471
Tumor
0.1
744
Normal
0.1
978
Normal
0.1
786
Normal
0.1
328
Normal
0.1
662
Normal
0.1
913
Tumor
0.1
395
Tumor
0.1
352
Normal
0.1
415
Tumor
0.1
818
Normal
0.1
1032
Normal
0.1
1045
Tumor
0.1
943
Tumor
0.1
212
Normal
0.1
635
Tumor
0.0
924
Normal
0.0
388
Normal
0.0
982
Normal
0.0
433
Tumor
0.0
1028
Normal
0.0
222
Normal
0.0
367
Tumor
0.0
685
Tumor
0.0
431
Tumor
0.0
686
Normal
0.0
984
Normal
0.0
211
Tumor
0.0
272
Normal
0.0
141
Tumor
0.0
221
Tumor
0.0
414
Normal
0.0
618
Normal
0.0
857
Tumor
0.0
366
Normal
0.0
314
Normal
0.0
852
Normal
0.0
423
Tumor
0.0
148
Normal
0.0
172
Normal
0.0
136
Normal
0.0
424
Normal
0.0
1044
Normal
0.0
446
Normal
0.0
286
Normal
0.0
432
Normal
0.0
332
Normal
0.0
664
Normal
0.0
925
Tumor
0.0
864
Normal
0.0
412
Normal
0.0
368
Normal
0.0
716
Normal
0.0
966
Normal
-0.1
474
Normal
-0.1
636
Normal
-0.1
467
Tumor
-0.1
452
Normal
-0.1
884
Normal
-0.1
298
Normal
-0.1
218
Normal
-0.1
342
Normal
-0.1
527
Tumor
-0.1
376
Normal
-0.1
727
Tumor
-0.1
1014
Normal
-0.1
356
Normal
-0.1
746
Normal
-0.1
952
Normal
-0.1
572
Normal
-0.1
128
Normal
-0.1
473
Tumor
-0.1
628
Normal
-0.1
922
Normal
-0.1
554
Normal
-0.1
313
Tumor
-0.1
923
Tumor
-0.1
491
Tumor
-0.1
492
Normal
-0.1
546
Normal
-0.1
858
Normal
-0.1
785
Tumor
-0.1
428
Normal
-0.1
468
Normal
-0.1
918
Normal
-0.1
464
Normal
-0.1
616
Normal
-0.1
445
Tumor
-0.1
558
Normal
-0.1
642
Normal
-0.1
114
Normal
-0.1
186
Normal
-0.1
914
Normal
-0.1
882
Normal
-0.1
396
Normal
-0.1
111
Normal
-0.2
525
Tumor
-0.2
964
Normal
-0.2
477
Tumor
-0.2
484
Normal
-0.2
534
Normal
-0.2
1022
Normal
-0.2
392
Normal
-0.2
938
Normal
-0.2
738
Normal
-0.2
866
Normal
-0.2
456
Normal
-0.2
125
Tumor
-0.2
867
Tumor
-0.2
571
Tumor
-0.2
361
Tumor
-0.2
472
Normal
-0.2
742
Normal
-0.2
968
Normal
-0.2
737
Tumor
-0.2
1046
Normal
-0.3
426
Normal
-0.3
436
Normal
-0.3
564
Normal
-0.3
723
Tumor
-0.3
728
Normal
-0.3
912
Normal
-0.3
261
Tumor
-0.3
528
Normal
-0.3
862
Normal
-0.3
493
Tumor
-0.3
142
Normal
-0.3
722
Normal
-0.3
873
Tumor
-0.3
391
Tumor
-0.3
981
Tumor
-0.3
271
Tumor
-0.3
488
Normal
-0.3
358
Normal
-0.3
514
Normal
-0.3
868
Normal
-0.3
977
Tumor
-0.3
258
Normal
-0.3
494
Normal
-0.4
466
Normal
-0.4
944
Normal
-0.4
721
Tumor
-0.4
231
Tumor
-0.4
132
Normal
-0.4
698
Normal
-0.4
513
Tumor
-0.4
743
Tumor
-0.4
915
Tumor
-0.4
526
Normal
-0.4
778
Normal
-0.4
427
Tumor
-0.4
957
Tumor
-0.4
462
Normal
-0.4
482
Normal
-0.4
824
Normal
-0.4
435
Tumor
-0.4
695
Tumor
-0.4
341
Tumor
-0.4
953
Tumor
-0.4
1027
Tumor
-0.4
617
Tumor
-0.5
327
Tumor
-0.5
1041
Tumor
-0.5
127
Tumor
-0.5
568
Normal
-0.5
553
Tumor
-0.5
393
Tumor
-0.5
523
Tumor
-0.5
714
Normal
-0.5
413
Tumor
-0.5
926
Normal
-0.5
861
Tumor
-0.5
227
Tumor
-0.5
756
Normal
-0.5
955
Tumor
-0.5
1026
Normal
-0.5
353
Tumor
-0.5
573
Tumor
-0.5
741
Tumor
-0.6
465
Tumor
-0.6
1043
Tumor
-0.6
983
Tumor
-0.6
696
Normal
-0.6
1016
Normal
-0.6
967
Tumor
-0.6
1015
Tumor
-0.6
648
Normal
-0.6
755
Tumor
-0.6
285
Tumor
-0.6
1025
Tumor
-0.7
557
Tumor
-0.7
518
Normal
-0.7
113
Tumor
-0.7
497
Tumor
-0.7
965
Tumor
-0.7
357
Tumor
-0.7
112
Tumor
-0.8
411
Tumor
-0.8
661
Tumor
-0.8
537
Tumor
-0.8
171
Tumor
-0.8
951
Tumor
-0.8
777
Tumor
-0.8
131
Tumor
-0.8
451
Tumor
-0.8
257
Tumor
-0.8
147
Tumor
-0.9
481
Tumor
-0.9
815
Tumor
-0.9
1021
Tumor
-0.9
1013
Tumor
-0.9
937
Tumor
-0.9
724
Normal
-0.9
533
Tumor
-0.9
567
Tumor
-1.0
745
Tumor
-1.0
663
Tumor
-1.1
851
Tumor
-1.1
267
Tumor
-1.1
351
Tumor
-1.2
911
Tumor
-1.4
487
Tumor
-1.4
865
Tumor
-1.4
123
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.