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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDZD11 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
187.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
126.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
125.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
96.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
95.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
93.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
90.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
83.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
81.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
77.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
77.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
76.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
75.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
74.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
73.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
72.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
71.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
71.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
70.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
69.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
64.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
64.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
64.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
63.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
63.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
63.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
62.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
62.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
62.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
60.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
60.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
60.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
59.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
58.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
58.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
58.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
57.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
56.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
56.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
56.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
55.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
55.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
55.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
54.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
54.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
53.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
53.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
53.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
52.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
52.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
52.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
51.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
50.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
50.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
50.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
50.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
50.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
50.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
49.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
49.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
49.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
49.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
49.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
47.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
47.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
47.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
47.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
46.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
46.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
46.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
46.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
46.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
46.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
46.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
45.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
45.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
44.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
44.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
44.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
44.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
44.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
44.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
43.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
43.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
42.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
42.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
42.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
42.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
42.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
42.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
42.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
42.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
42.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
42.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
41.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
41.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
41.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
41.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
41.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
41.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
40.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
40.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
40.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
40.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
40.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
39.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
39.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
39.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
39.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
39.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
39.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
38.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
38.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
38.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
38.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
38.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
38.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
38.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
38.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
37.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
37.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
37.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
37.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
37.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
37.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
37.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
37.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
37.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
36.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
36.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
36.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
36.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
36.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
36.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
36.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
36.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
36.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
35.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
35.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
35.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
35.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
35.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
35.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
34.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
34.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
34.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
34.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
34.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
34.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
33.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
33.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
33.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
33.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
33.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
33.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
33.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
33.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
32.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
32.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
32.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
32.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
32.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
32.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
32.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
32.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
32.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
32.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
32.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
32.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
32.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
31.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
31.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
31.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
31.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
31.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
30.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
30.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
30.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
30.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
30.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
30.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
30.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
30.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
29.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
29.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
29.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
29.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
29.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
29.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
29.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
29.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
29.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
29.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
28.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
28.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
28.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
28.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
28.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
28.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
28.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
28.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
28.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
28.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
28.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
28.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
27.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
27.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
27.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
27.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
27.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
27.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
26.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
26.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
26.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
26.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
26.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
26.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
26.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
25.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
25.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
25.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
25.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
25.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
25.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
25.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
25.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
24.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
24.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
23.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
23.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
23.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
23.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
23.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
22.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
22.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
22.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
22.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
21.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
21.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
20.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
20.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
20.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
19.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
19.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
18.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
18.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
16.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
15.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
15.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
15.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
14.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
12.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDZD11 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.6
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
68.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
64.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
63.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
58.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
52.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
50.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
48.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
48.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
46.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
46.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
44.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
44.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
42.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
42.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
42.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
41.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
40.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
40.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
40.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
39.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
38.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
38.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
38.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
38.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
38.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
37.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
37.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
36.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
36.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
36.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
35.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
34.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
34.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
34.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
33.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
33.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
33.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
33.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
33.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
33.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
32.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
32.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
31.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
31.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
31.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
31.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
30.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
30.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
30.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
29.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
29.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
29.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
29.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
29.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
28.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
28.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
28.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
27.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
26.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
26.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
25.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
23.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
23.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
23.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
22.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
19.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
737
Tumor
0.7
647
Tumor
0.6
698
Normal
0.6
411
Tumor
0.5
147
Tumor
0.5
196
Normal
0.5
695
Tumor
0.5
357
Tumor
0.5
314
Normal
0.4
423
Tumor
0.4
1046
Normal
0.4
616
Normal
0.4
665
Tumor
0.4
222
Normal
0.4
217
Tumor
0.4
636
Normal
0.4
615
Tumor
0.4
277
Tumor
0.4
131
Tumor
0.4
191
Tumor
0.3
285
Tumor
0.3
743
Tumor
0.3
448
Normal
0.3
426
Normal
0.3
148
Normal
0.3
127
Tumor
0.3
786
Normal
0.3
722
Normal
0.3
365
Tumor
0.3
232
Normal
0.3
186
Normal
0.3
298
Normal
0.3
464
Normal
0.3
213
Tumor
0.3
313
Tumor
0.3
128
Normal
0.3
171
Tumor
0.3
218
Normal
0.3
865
Tumor
0.3
221
Tumor
0.3
568
Normal
0.3
393
Tumor
0.3
297
Tumor
0.3
416
Normal
0.3
341
Tumor
0.3
278
Normal
0.3
1027
Tumor
0.3
716
Normal
0.3
361
Tumor
0.3
466
Normal
0.2
214
Normal
0.2
714
Normal
0.2
422
Normal
0.2
312
Normal
0.2
376
Normal
0.2
332
Normal
0.2
463
Tumor
0.2
873
Tumor
0.2
425
Tumor
0.2
436
Normal
0.2
132
Normal
0.2
111
Normal
0.2
432
Normal
0.2
477
Tumor
0.2
162
Normal
0.2
573
Tumor
0.2
671
Tumor
0.2
445
Tumor
0.2
354
Normal
0.2
785
Tumor
0.2
413
Tumor
0.2
858
Normal
0.2
481
Tumor
0.2
777
Tumor
0.2
195
Tumor
0.2
172
Normal
0.2
468
Normal
0.2
431
Tumor
0.2
114
Normal
0.2
696
Normal
0.2
628
Normal
0.2
746
Normal
0.2
384
Normal
0.2
686
Normal
0.2
456
Normal
0.2
452
Normal
0.2
564
Normal
0.2
642
Normal
0.1
192
Normal
0.1
563
Tumor
0.1
465
Tumor
0.1
414
Normal
0.1
443
Tumor
0.1
272
Normal
0.1
394
Normal
0.1
745
Tumor
0.1
258
Normal
0.1
424
Normal
0.1
723
Tumor
0.1
482
Normal
0.1
187
Tumor
0.1
618
Normal
0.1
351
Tumor
0.1
1044
Normal
0.1
648
Normal
0.1
362
Normal
0.1
428
Normal
0.1
914
Normal
0.1
957
Tumor
0.1
142
Normal
0.1
421
Tumor
0.1
572
Normal
0.1
136
Normal
0.1
666
Normal
0.1
1032
Normal
0.1
375
Tumor
0.1
727
Tumor
0.1
352
Normal
0.1
356
Normal
0.1
358
Normal
0.1
738
Normal
0.1
882
Normal
0.1
755
Tumor
0.1
1022
Normal
0.1
721
Tumor
0.1
368
Normal
0.1
742
Normal
0.1
474
Normal
0.1
664
Normal
0.1
444
Normal
0.1
138
Normal
0.1
912
Normal
0.0
228
Normal
0.0
446
Normal
0.0
685
Tumor
0.0
137
Tumor
0.0
574
Normal
0.0
392
Normal
0.0
813
Tumor
0.0
1025
Tumor
0.0
867
Tumor
0.0
1016
Normal
0.0
342
Normal
0.0
756
Normal
0.0
964
Normal
0.0
663
Tumor
0.0
434
Normal
0.0
715
Tumor
0.0
271
Tumor
0.0
911
Tumor
0.0
161
Tumor
0.0
472
Normal
0.0
146
Normal
0.0
815
Tumor
0.0
126
Normal
0.0
124
Normal
0.0
353
Tumor
0.0
884
Normal
0.0
951
Tumor
0.0
455
Tumor
0.0
262
Normal
0.0
267
Tumor
0.0
741
Tumor
0.0
881
Tumor
0.0
1015
Tumor
0.0
188
Normal
0.0
641
Tumor
0.0
331
Tumor
0.0
1013
Tumor
0.0
388
Normal
0.0
396
Normal
0.0
488
Normal
0.0
878
Normal
0.0
435
Tumor
0.0
461
Tumor
0.0
231
Tumor
0.0
1045
Tumor
0.0
433
Tumor
0.0
557
Tumor
0.0
344
Normal
0.0
862
Normal
-0.1
328
Normal
-0.1
526
Normal
-0.1
386
Normal
-0.1
778
Normal
-0.1
364
Normal
-0.1
286
Normal
-0.1
571
Tumor
-0.1
123
Tumor
-0.1
662
Normal
-0.1
868
Normal
-0.1
926
Normal
-0.1
141
Tumor
-0.1
824
Normal
-0.1
728
Normal
-0.1
627
Tumor
-0.1
944
Normal
-0.1
558
Normal
-0.1
366
Normal
-0.1
1021
Tumor
-0.1
567
Tumor
-0.1
1028
Normal
-0.1
635
Tumor
-0.1
427
Tumor
-0.1
954
Normal
-0.1
412
Normal
-0.1
1014
Normal
-0.1
1043
Tumor
-0.1
145
Tumor
-0.1
462
Normal
-0.1
534
Normal
-0.1
1042
Normal
-0.1
383
Tumor
-0.1
185
Tumor
-0.1
135
Tumor
-0.1
467
Tumor
-0.1
1026
Normal
-0.1
958
Normal
-0.1
982
Normal
-0.1
261
Tumor
-0.1
818
Normal
-0.1
387
Tumor
-0.1
874
Normal
-0.1
268
Normal
-0.1
367
Tumor
-0.1
284
Normal
-0.1
473
Tumor
-0.1
391
Tumor
-0.1
981
Tumor
-0.1
977
Tumor
-0.1
955
Tumor
-0.1
257
Tumor
-0.1
866
Normal
-0.1
672
Normal
-0.1
113
Tumor
-0.2
937
Tumor
-0.2
112
Tumor
-0.2
864
Normal
-0.2
943
Tumor
-0.2
385
Tumor
-0.2
968
Normal
-0.2
484
Normal
-0.2
661
Tumor
-0.2
523
Tumor
-0.2
311
Tumor
-0.2
938
Normal
-0.2
917
Tumor
-0.2
498
Normal
-0.2
497
Tumor
-0.2
494
Normal
-0.2
984
Normal
-0.2
956
Normal
-0.2
713
Tumor
-0.2
536
Normal
-0.2
976
Normal
-0.2
817
Tumor
-0.2
852
Normal
-0.2
1041
Tumor
-0.2
963
Tumor
-0.2
952
Normal
-0.2
744
Normal
-0.2
913
Tumor
-0.2
953
Tumor
-0.2
478
Normal
-0.2
814
Normal
-0.2
212
Normal
-0.2
924
Normal
-0.3
921
Tumor
-0.3
915
Tumor
-0.3
966
Normal
-0.3
517
Tumor
-0.3
922
Normal
-0.3
816
Normal
-0.3
447
Tumor
-0.3
724
Normal
-0.3
965
Tumor
-0.3
883
Tumor
-0.3
918
Normal
-0.3
857
Tumor
-0.3
528
Normal
-0.3
493
Tumor
-0.3
877
Tumor
-0.3
546
Normal
-0.3
983
Tumor
-0.3
617
Tumor
-0.3
975
Tumor
-0.4
283
Tumor
-0.4
471
Tumor
-0.4
527
Tumor
-0.4
978
Normal
-0.4
861
Tumor
-0.4
851
Tumor
-0.4
518
Normal
-0.4
415
Tumor
-0.4
451
Tumor
-0.4
545
Tumor
-0.4
533
Tumor
-0.4
863
Tumor
-0.4
492
Normal
-0.4
483
Tumor
-0.4
327
Tumor
-0.5
224
Normal
-0.5
923
Tumor
-0.5
823
Tumor
-0.5
487
Tumor
-0.5
967
Tumor
-0.5
125
Tumor
-0.5
355
Tumor
-0.5
925
Tumor
-0.5
227
Tumor
-0.5
395
Tumor
-0.5
363
Tumor
-0.6
1031
Tumor
-0.6
916
Normal
-0.6
697
Tumor
-0.6
223
Tumor
-0.6
535
Tumor
-0.7
553
Tumor
-0.7
554
Normal
-0.7
525
Tumor
-0.7
513
Tumor
-0.7
491
Tumor
-0.8
343
Tumor
-0.9
515
Tumor
-0.9
514
Normal
-0.9
537
Tumor
-0.9
516
Normal
-0.9
538
Normal
-1.0
524
Normal
-1.1
211
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
