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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EPCAM is not prognostic in Ovary Serous Cystadenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
262.5
Number of samples
349
Samples
Sample
Description
TPM
TCGA-25-2400-01A
0 years, female, white, stage:Stage IIIC, dead, 1278 days
1482.6
TCGA-57-1583-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 346 days
1271.6
TCGA-24-1424-01A
0 years, female, white, stage:Stage IIIC, alive, 183 days
1229.5
TCGA-24-1567-01A
0 years, female, white, stage:Stage IIIB, dead, 524 days
957.9
TCGA-13-0906-01A
0 years, female, white, stage:Stage IIIC, alive, 3619 days
807.7
TCGA-31-1959-01A
0 years, female, white, stage:Stage IV, alive, 67 days
658.5
TCGA-61-2111-01A
0 years, female, white, stage:Stage IV, alive, 3825 days
651.0
TCGA-61-1900-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 176 days
633.7
TCGA-61-2097-01A
0 years, female, white, stage:Stage IIC, alive, 1844 days
625.5
TCGA-24-1103-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1646 days
575.9
TCGA-09-0369-01A
0 years, female, white, stage:Stage IIIC, dead, 1082 days
575.0
TCGA-13-1512-01A
0 years, female, white, stage:Stage IIIC, alive, 442 days
573.8
TCGA-59-A5PD-01A
0 years, female, black or african american, stage:Stage IC, dead, 624 days
573.2
TCGA-29-1697-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
553.6
TCGA-04-1655-01A
0 years, female, white, stage:Stage IIIB, dead, 1380 days
526.8
TCGA-24-1544-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 820 days
524.4
TCGA-13-0800-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
519.6
TCGA-20-1686-01A
0 years, female, white, stage:Stage IIIC, alive, 89 days
513.4
TCGA-13-0897-01A
0 years, female, white, stage:Stage IIIC, dead, 2182 days
512.4
TCGA-24-1423-01A
0 years, female, white, stage:Stage IIIC, alive, 190 days
500.2
TCGA-5X-AA5U-01A
0 years, female, black or african american, stage:Stage IIC, alive, 361 days
499.5
TCGA-23-1119-01A
0 years, female, white, stage:Stage IIIC, alive, 3953 days
496.3
TCGA-25-1322-01A
0 years, female, white, stage:Stage IV, dead, 91 days
479.4
TCGA-61-1733-01A
0 years, female, white, stage:Stage IIIC, alive, 967 days
471.7
TCGA-24-2027-01A
0 years, female, white, stage:Stage IV, dead, 3337 days
470.0
TCGA-59-2352-01A
0 years, female, white, stage:Stage IIIC, dead, 286 days
469.0
TCGA-OY-A56Q-01A
0 years, female, black or african american, stage:Stage IIA, alive, 576 days
458.0
TCGA-WR-A838-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 304 days
445.3
TCGA-24-2289-01A
0 years, female, white, stage:Stage IV, dead, 2049 days
441.1
TCGA-25-1631-01A
0 years, female, white, stage:Stage IIIC, dead, 9 days
438.8
TCGA-61-2000-01A
0 years, female, white, stage:Stage IIIC, alive, 441 days
433.1
TCGA-25-2401-01A
0 years, female, white, stage:Stage IIIC, dead, 90 days
432.9
TCGA-57-1584-01A
0 years, female, white, stage:Stage IIIC, alive, 643 days
429.6
TCGA-13-0888-01A
0 years, female, white, stage:Stage IIIC, dead, 2811 days
429.4
TCGA-13-0797-01A
0 years, female, white, stage:Stage IIIC, alive, 2121 days
428.3
TCGA-24-1474-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 676 days
426.3
TCGA-31-1953-01A
0 years, female, asian, stage:Stage IIIC, alive, 204 days
411.2
TCGA-61-1738-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1089 days
409.4
TCGA-61-2088-01A
0 years, female, white, stage:Stage IIIC, alive, 145 days
408.6
TCGA-24-1552-01A
0 years, female, white, stage:Stage IIIC, dead, 1259 days
407.1
TCGA-24-1604-01A
0 years, female, white, stage:Stage IIIC, dead, 2688 days
404.1
TCGA-25-1315-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
400.9
TCGA-36-1571-01A
0 years, female, white, stage:Stage IIIB, dead, 695 days
399.9
TCGA-24-1549-01A
0 years, female, white, stage:Stage IIIB, dead, 1721 days
394.2
TCGA-13-1492-01A
0 years, female, white, stage:Stage IIIC, dead, 3819 days
393.7
TCGA-09-2045-01A
0 years, female, asian, stage:Stage IV, dead, 1069 days
393.0
TCGA-25-1634-01A
0 years, female, white, stage:Stage IIIC, dead, 1091 days
391.1
TCGA-13-1496-01A
0 years, female, white, stage:Stage IIIC, dead, 129 days
382.9
TCGA-29-1696-01A
0 years, female, white, stage:Stage IIIC, dead, 1032 days
381.0
TCGA-25-2398-01A
0 years, female, white, stage:Stage IIIC, dead, 1369 days
377.2
TCGA-29-A5NZ-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1088 days
375.4
TCGA-29-1711-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 1053 days
374.2
TCGA-24-2298-01A
0 years, female, white, stage:Stage IIIC, dead, 1620 days
371.2
TCGA-61-2098-01A
0 years, female, white, stage:Stage IIIC, alive, 1993 days
370.9
TCGA-30-1718-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
364.1
TCGA-24-1558-01A
0 years, female, white, stage:Stage IIIC, dead, 594 days
364.0
TCGA-29-1762-01A
0 years, female, white, stage:Stage IV, dead, 2634 days
362.7
TCGA-59-2363-01A
0 years, female, asian, stage:Stage IIIA, alive, 165 days
359.5
TCGA-29-1691-01A
0 years, female, white, stage:Stage IIIC, dead, 1470 days
353.4
TCGA-09-0364-01A
0 years, female, white, stage:Stage IIC, dead, 887 days
353.2
TCGA-61-1724-01A
0 years, female, white, stage:Stage IIIC, dead, 637 days
345.0
TCGA-23-2078-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
344.8
TCGA-09-0366-01A
0 years, female, white, stage:Stage IIIC, dead, 1757 days
342.3
TCGA-24-2020-01A
0 years, female, white, stage:Stage IIIC, dead, 4624 days
338.3
TCGA-36-1574-01A
0 years, female, asian, stage:Stage IIIC, alive, 686 days
337.5
TCGA-04-1331-01A
0 years, female, white, stage:Stage IIIC, dead, 1336 days
332.3
TCGA-24-2023-01A
0 years, female, white, stage:Stage IIIA, dead, 1364 days
330.1
TCGA-13-2060-01A
0 years, female, white, stage:Stage IV, alive, 2369 days
328.3
TCGA-09-2051-01A
0 years, female, white, stage:Stage IIIC, alive, 1919 days
328.0
TCGA-23-2084-01A
0 years, female, white, stage:Stage IV, dead, 1516 days
326.9
TCGA-13-1489-01A
0 years, female, white, stage:Stage IIIC, dead, 2553 days
325.9
TCGA-29-1778-01A
0 years, female, white, stage:Stage IIIC, alive, 454 days
322.5
TCGA-13-1495-01A
0 years, female, white, stage:Stage IIIC, dead, 2749 days
322.4
TCGA-36-1576-01A
0 years, female, stage:Stage IIIC, alive, 915 days
322.2
TCGA-13-A5FT-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 2143 days
322.2
TCGA-04-1651-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
320.6
TCGA-61-2101-01A
0 years, female, white, stage:Stage IIIC, dead, 1688 days
318.3
TCGA-30-1714-01A
0 years, female, white, stage:Stage IV, dead, 1158 days
317.1
TCGA-04-1365-01A
0 years, female, white, stage:Stage IIIB, alive, 947 days
314.1
TCGA-30-1861-01A
0 years, female, white, stage:Stage IIIC, dead, 1058 days
310.0
TCGA-04-1514-01A
0 years, female, white, stage:Stage IIIA, dead, 1720 days
309.6
TCGA-57-1994-01A
0 years, female, white, stage:'--, alive, 761 days
307.7
TCGA-61-1725-01A
0 years, female, white, stage:Stage IIIC, alive, 956 days
307.7
TCGA-24-1846-01A
0 years, female, stage:Stage IIIC, alive, 133 days
306.5
TCGA-24-2254-01A
0 years, female, white, stage:Stage IIIC, dead, 1736 days
304.4
TCGA-20-1682-01A
0 years, female, white, stage:Stage IIIC, alive, 837 days
303.8
TCGA-59-2350-01A
0 years, female, stage:Stage IV, dead, 679 days
302.3
TCGA-13-0762-01A
0 years, female, white, stage:Stage IIIC, alive, 3400 days
302.2
TCGA-25-1628-01A
0 years, female, white, stage:Stage IIIC, dead, 627 days
302.0
TCGA-25-1633-01A
0 years, female, white, stage:Stage IIIC, dead, 1891 days
300.0
TCGA-61-1918-01A
0 years, female, white, stage:Stage IV, dead, 479 days
299.5
TCGA-VG-A8LO-01A
0 years, female, black or african american, stage:Stage IV, dead, 24 days
296.9
TCGA-23-2077-01A
0 years, female, white, stage:Stage IIIC, alive, 3525 days
296.5
TCGA-23-1122-01A
0 years, female, white, stage:Stage IIIC, dead, 1189 days
296.2
TCGA-61-2113-01A
0 years, female, white, stage:Stage IIC, dead, 676 days
294.4
TCGA-57-1585-01A
0 years, female, white, stage:Stage IIIC, dead, 53 days
294.3
TCGA-31-1944-01A
0 years, female, white, stage:Stage IIIC, alive, 1386 days
294.2
TCGA-29-1763-01A
0 years, female, black or african american, stage:Stage IIC, alive, 2032 days
294.1
TCGA-09-1669-01A
0 years, female, white, stage:Stage IIIA, alive, 928 days
290.4
TCGA-25-1632-01A
0 years, female, white, stage:Stage IV, dead, 1799 days
289.2
TCGA-24-1847-01A
0 years, female, white, stage:Stage IV, alive, 343 days
288.1
TCGA-24-2026-01A
0 years, female, white, stage:Stage IIIC, dead, 1059 days
288.0
TCGA-04-1519-01A
0 years, female, stage:Stage IIIC, alive, 24 days
286.3
TCGA-31-1950-01A
0 years, female, white, stage:Stage IIIC, alive, 571 days
284.9
TCGA-61-2009-01A
0 years, female, white, stage:Stage IIIC, alive, 1212 days
284.7
TCGA-25-1318-01A
0 years, female, white, stage:Stage IIIC, dead, 1064 days
284.5
TCGA-29-1701-01A
0 years, female, white, stage:Stage IIIC, dead, 515 days
283.9
TCGA-13-0725-01A
0 years, female, white, stage:Stage IIIC, dead, 377 days
282.6
TCGA-25-2393-01A
0 years, female, white, stage:Stage IIIC, dead, 1157 days
282.0
TCGA-25-1626-01A
0 years, female, white, stage:Stage IIIC, dead, 518 days
281.7
TCGA-09-1662-01A
0 years, female, white, stage:Stage IV, dead, 2717 days
280.9
TCGA-36-1577-01A
0 years, female, asian, stage:Stage IIC, alive, 783 days
280.4
TCGA-61-2003-01A
0 years, female, white, stage:Stage IIIC, alive, 122 days
278.4
TCGA-13-1511-01A
0 years, female, asian, stage:Stage IV, dead, 1650 days
277.9
TCGA-24-1562-01A
0 years, female, white, stage:Stage IIIC, dead, 1384 days
276.7
TCGA-25-1312-01A
0 years, female, white, stage:Stage IV, dead, 31 days
276.4
TCGA-04-1648-01A
0 years, female, white, stage:Stage IIIC, dead, 871 days
276.0
TCGA-13-1499-01A
0 years, female, white, stage:Stage IIIC, alive, 3500 days
275.7
TCGA-23-1024-01A
0 years, female, white, stage:Stage IV, alive, 468 days
275.4
TCGA-25-1326-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
274.0
TCGA-10-0927-01A
0 years, female, stage:Stage IIIC, dead, 2490 days
274.0
TCGA-04-1364-01A
0 years, female, white, stage:Stage IIIC, dead, 1024 days
273.2
TCGA-61-1741-01A
0 years, female, white, stage:Stage IIIB, dead, 1024 days
272.2
TCGA-24-1924-01A
0 years, female, white, stage:Stage IIIC, dead, 919 days
271.2
TCGA-09-2048-01A
0 years, female, white, stage:Stage IIIC, dead, 138 days
271.2
TCGA-13-1403-01A
0 years, female, white, stage:Stage IIIC, dead, 2345 days
270.6
TCGA-61-1998-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
270.5
TCGA-61-1907-01A
0 years, female, white, stage:Stage IIIC, alive, 952 days
268.5
TCGA-24-2297-01A
0 years, female, white, stage:Stage IIIC, dead, 1699 days
268.4
TCGA-23-1113-01A
0 years, female, white, stage:Stage IV, dead, 949 days
267.8
TCGA-24-1850-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
267.8
TCGA-24-1469-01A
0 years, female, white, stage:Stage IIIC, alive, 277 days
267.0
TCGA-29-1774-01A
0 years, female, white, stage:Stage IIIC, alive, 527 days
266.8
TCGA-36-1568-01A
0 years, female, stage:Stage IIIC, alive, 875 days
265.7
TCGA-29-1783-01A
0 years, female, white, stage:Stage IIIC, alive, 220 days
264.9
TCGA-59-2355-01A
0 years, female, white, stage:Stage IV, dead, 65 days
263.9
TCGA-09-0367-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IIIC, dead, 547 days
263.8
TCGA-13-1506-01A
0 years, female, white, stage:Stage IIIC, dead, 1039 days
262.2
TCGA-23-1116-01A
0 years, female, white, stage:Stage IIIC, dead, 592 days
260.1
TCGA-13-0883-01A
0 years, female, white, stage:Stage IIIC, dead, 2097 days
259.1
TCGA-24-1616-01A
0 years, female, white, stage:Stage IIIC, dead, 1163 days
259.1
TCGA-23-1110-01A
0 years, female, white, stage:Stage IIIC, alive, 1658 days
257.4
TCGA-24-1560-01A
0 years, female, white, stage:Stage IIIC, dead, 1341 days
256.9
TCGA-04-1362-01A
0 years, female, white, stage:Stage IIC, dead, 1348 days
256.6
TCGA-61-1737-01A
0 years, female, white, stage:Stage IV, alive, 1364 days
256.6
TCGA-13-0924-01A
0 years, female, white, stage:Stage IV, alive, 2614 days
256.1
TCGA-24-1563-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1451 days
255.9
TCGA-24-1428-01A
0 years, female, white, stage:Stage IIIC, alive, 529 days
255.2
TCGA-31-1946-01A
0 years, female, stage:Stage IIIC, alive, 918 days
254.0
TCGA-04-1356-01A
0 years, female, white, stage:Stage IIC, dead, 1499 days
253.9
TCGA-25-1317-01A
0 years, female, white, stage:Stage IIIC, dead, 61 days
253.3
TCGA-61-2109-01A
0 years, female, white, stage:Stage IIIC, dead, 629 days
253.2
TCGA-13-0730-01A
0 years, female, white, stage:Stage IIIC, dead, 542 days
253.2
TCGA-25-1323-01A
0 years, female, white, stage:Stage IIIC, dead, 395 days
252.0
TCGA-29-1769-01A
0 years, female, white, stage:Stage IIIC, alive, 699 days
251.9
TCGA-61-1995-01A
0 years, female, white, stage:Stage IIIC, alive, 61 days
251.7
TCGA-57-1582-01A
0 years, female, white, stage:Stage IIIC, dead, 731 days
251.6
TCGA-24-1557-01A
0 years, female, white, stage:Stage IIIC, dead, 1213 days
250.4
TCGA-13-0885-01A
0 years, female, white, stage:Stage IIIC, alive, 3388 days
249.9
TCGA-24-1467-01A
0 years, female, white, stage:Stage IIIC, dead, 3224 days
249.8
TCGA-29-1784-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
246.8
TCGA-61-2092-01A
0 years, female, white, stage:Stage IIIC, alive, 1573 days
246.6
TCGA-29-1703-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1815 days
245.1
TCGA-25-1627-01A
0 years, female, white, stage:Stage IIIC, dead, 394 days
244.1
TCGA-09-1666-01A
0 years, female, white, stage:Stage IIIC, alive, 1752 days
243.8
TCGA-13-1407-01A
0 years, female, white, stage:Stage IIIC, alive, 2534 days
243.0
TCGA-24-1417-01A
0 years, female, white, stage:Stage IV, alive, 238 days
241.3
TCGA-25-2399-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
240.5
TCGA-24-1430-01A
0 years, female, white, stage:Stage IIIC, dead, 863 days
239.7
TCGA-24-1416-01A
0 years, female, white, stage:Stage IV, alive, 194 days
239.2
TCGA-24-2261-01A
0 years, female, white, stage:Stage IIIC, dead, 24 days
238.0
TCGA-24-1845-01A
0 years, female, white, stage:Stage IIIC, alive, 116 days
237.4
TCGA-13-1510-01A
0 years, female, white, stage:Stage IIIC, dead, 1359 days
236.7
TCGA-04-1542-01A
0 years, female, white, stage:Stage IIIB, dead, 2561 days
234.8
TCGA-24-1842-01A
0 years, female, white, stage:Stage IIIC, alive, 253 days
234.4
TCGA-59-2348-01A
0 years, female, white, stage:Stage IIIC, alive, 5481 days
233.8
TCGA-61-1728-01A
0 years, female, white, stage:Stage IV, alive, 848 days
233.7
TCGA-24-1413-01A
0 years, female, white, stage:Stage IIIC, alive, 192 days
233.7
TCGA-23-1111-01A
0 years, female, white, stage:Stage IIIC, alive, 98 days
231.7
TCGA-36-1581-01A
0 years, female, white, stage:Stage IIC, alive, 751 days
230.7
TCGA-10-0928-01A
0 years, female, white, stage:Stage IIIC, dead, 563 days
230.5
TCGA-29-1710-01A
0 years, female, white, stage:Stage IIIC, dead, 951 days
230.1
TCGA-23-1027-01A
0 years, female, white, stage:Stage IIIC, dead, 976 days
229.3
TCGA-24-2036-01A
0 years, female, white, stage:Stage IIIA, dead, 1947 days
228.9
TCGA-24-0979-01A
0 years, female, white, stage:Stage IV, dead, 1264 days
228.3
TCGA-13-1487-01A
0 years, female, white, stage:Stage IV, dead, 681 days
228.2
TCGA-29-1695-01A
0 years, female, white, stage:Stage IIIC, dead, 1229 days
227.6
TCGA-25-2392-01A
0 years, female, white, stage:Stage IV, dead, 31 days
227.5
TCGA-36-1570-01A
0 years, female, white, stage:Stage IIIC, alive, 655 days
226.3
TCGA-24-1603-01A
0 years, female, white, stage:Stage IIIB, dead, 2742 days
224.4
TCGA-24-2288-01A
0 years, female, white, stage:Stage IIIC, dead, 25 days
224.2
TCGA-13-1505-01A
0 years, female, white, stage:Stage IIIC, alive, 1998 days
223.3
TCGA-24-1843-01A
0 years, female, white, stage:Stage IIIC, alive, 106 days
223.3
TCGA-24-1550-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
223.2
TCGA-13-0804-01A
0 years, female, white, stage:Stage IIIC, dead, 1073 days
222.8
TCGA-24-2024-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1769 days
222.4
TCGA-25-1635-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
220.2
TCGA-13-1408-01A
0 years, female, white, stage:Stage IIIC, dead, 1680 days
220.1
TCGA-23-1028-01A
0 years, female, white, stage:Stage IIIC, alive, 1503 days
218.7
TCGA-29-1705-01A
0 years, female, white, stage:Stage IIIC, dead, 555 days
217.9
TCGA-24-1551-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
215.3
TCGA-10-0933-01A
0 years, female, white, stage:Stage IIIC, dead, 446 days
214.5
TCGA-25-1870-01A
0 years, female, white, stage:Stage IIIC, dead, 455 days
213.4
TCGA-59-2354-01A
0 years, female, white, stage:Stage IIIC, dead, 1046 days
213.1
TCGA-13-1409-01A
0 years, female, white, stage:Stage IIIC, dead, 1742 days
213.1
TCGA-09-1670-01A
0 years, female, white, stage:Stage IIIA, alive, 547 days
212.5
TCGA-13-1498-01A
0 years, female, white, stage:Stage IIIC, dead, 2012 days
212.2
TCGA-24-1105-01A
0 years, female, white, stage:Stage IIIC, dead, 1442 days
211.3
TCGA-04-1361-01A
0 years, female, white, stage:Stage IIIB, alive, 989 days
210.5
TCGA-30-1853-01A
0 years, female, white, stage:Stage IIIC, dead, 1103 days
210.0
TCGA-23-1030-01A
0 years, female, white, stage:Stage IIIC, alive, 886 days
209.8
TCGA-13-1497-01A
0 years, female, white, stage:Stage IIIC, alive, 3871 days
209.3
TCGA-24-1464-01A
0 years, female, white, stage:Stage IIIC, dead, 379 days
208.1
TCGA-25-2404-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 883 days
207.6
TCGA-61-2104-01A
0 years, female, white, stage:Stage IIC, alive, 2338 days
206.5
TCGA-13-1483-01A
0 years, female, white, stage:Stage IIIC, dead, 895 days
206.0
TCGA-24-1418-01A
0 years, female, white, stage:Stage IIIC, alive, 243 days
206.0
TCGA-61-1919-01A
0 years, female, white, stage:Stage IIIC, dead, 1161 days
205.7
TCGA-13-0920-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
205.1
TCGA-29-1776-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 360 days
203.4
TCGA-20-0987-01A
0 years, female, white, stage:Stage IIIC, dead, 701 days
203.0
TCGA-25-1630-01A
0 years, female, white, stage:Stage IIIC, dead, 1162 days
202.6
TCGA-04-1341-01A
0 years, female, white, stage:'--, alive, 33 days
200.8
TCGA-61-1914-01A
0 years, female, stage:Stage IIIC, alive, 1722 days
200.3
TCGA-23-1123-01A
0 years, female, white, stage:Stage IIIC, dead, 1018 days
200.3
TCGA-25-1316-01A
0 years, female, white, stage:Stage IIIC, dead, 1279 days
200.2
TCGA-24-1427-01A
0 years, female, stage:Stage IIIC, alive, 147 days
198.9
TCGA-24-1422-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 23 days
198.5
TCGA-04-1350-01A
0 years, female, white, stage:Stage IIIC, dead, 1946 days
195.6
TCGA-29-1785-01A
0 years, female, white, stage:Stage IIIC, dead, 1104 days
195.0
TCGA-36-1580-01A
0 years, female, stage:Stage IIIC, dead, 737 days
194.5
TCGA-25-1329-01A
0 years, female, white, stage:Stage IIIC, dead, 457 days
194.0
TCGA-25-1321-01A
0 years, female, white, stage:Stage IIIC, dead, 1033 days
193.8
TCGA-61-2012-01A
0 years, female, white, stage:Stage IIC, alive, 932 days
193.3
TCGA-25-1623-01A
0 years, female, white, stage:Stage IV, dead, 565 days
193.2
TCGA-04-1536-01A
0 years, female, black or african american, stage:Stage IV, dead, 885 days
193.2
TCGA-23-1118-01A
0 years, female, white, stage:Stage IIIC, alive, 2616 days
192.8
TCGA-13-0887-01A
0 years, female, white, stage:Stage IIIC, dead, 2028 days
192.4
TCGA-24-2290-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
189.7
TCGA-24-1434-01A
0 years, female, white, stage:Stage IIIC, dead, 568 days
189.5
TCGA-61-2110-01A
0 years, female, white, stage:Stage IIIC, dead, 1354 days
189.2
TCGA-61-2002-01A
0 years, female, white, stage:Stage IIIC, alive, 547 days
188.7
TCGA-13-1404-01A
0 years, female, white, stage:Stage IIIC, alive, 2469 days
187.8
TCGA-24-1928-01A
0 years, female, white, stage:Stage IIIC, dead, 336 days
186.3
TCGA-13-0886-01A
0 years, female, white, stage:Stage IIIC, alive, 4665 days
185.4
TCGA-20-1687-01A
0 years, female, white, stage:Stage IV, alive, 81 days
184.4
TCGA-57-1993-01A
0 years, female, white, stage:Stage IIIC, alive, 763 days
183.1
TCGA-30-1862-01A
0 years, female, white, stage:Stage IV, dead, 186 days
181.2
TCGA-24-1435-01A
0 years, female, white, stage:Stage IIIC, dead, 1324 days
181.0
TCGA-13-0724-01A
0 years, female, white, stage:Stage IV, dead, 83 days
180.9
TCGA-25-1319-01A
0 years, female, white, stage:Stage IIIC, dead, 1977 days
180.8
TCGA-23-1022-01A
0 years, female, white, stage:Stage IIIC, dead, 1511 days
180.3
TCGA-13-0720-01A
0 years, female, white, stage:Stage IIIC, dead, 1355 days
179.4
TCGA-29-2425-01A
0 years, female, white, stage:Stage IIIC, alive, 1977 days
178.0
TCGA-24-1104-01A
0 years, female, white, stage:Stage IV, dead, 1933 days
175.8
TCGA-24-0982-01A
0 years, female, white, stage:Stage IIIC, dead, 679 days
174.4
TCGA-13-1410-01A
0 years, female, white, stage:Stage IV, alive, 2464 days
173.0
TCGA-30-1857-01A
0 years, female, white, stage:Stage IV, dead, 8 days
173.0
TCGA-24-2267-01A
0 years, female, white, stage:Stage IIB, dead, 1446 days
172.2
TCGA-30-1866-01A
0 years, female, white, stage:Stage IV, dead, 1114 days
171.2
TCGA-25-2396-01A
0 years, female, white, stage:Stage IIIC, dead, 92 days
170.9
TCGA-25-2409-01A
0 years, female, white, stage:Stage IV, dead, 821 days
170.5
TCGA-23-1120-01A
0 years, female, white, stage:Stage IIIC, alive, 130 days
170.1
TCGA-10-0937-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
168.2
TCGA-29-1694-01A
0 years, female, white, stage:Stage IIIC, dead, 1187 days
167.7
TCGA-24-1553-01A
0 years, female, white, stage:Stage IIIB, dead, 1767 days
167.6
TCGA-24-2033-01A
0 years, female, white, stage:Stage IIIC, dead, 562 days
167.4
TCGA-24-0966-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 232 days
167.2
TCGA-24-1431-01A
0 years, female, white, stage:Stage IIIC, dead, 583 days
166.5
TCGA-59-2351-01A
0 years, female, white, stage:Stage IIIC, alive, 3532 days
165.7
TCGA-04-1347-01A
0 years, female, white, stage:Stage IV, alive, 1919 days
163.3
TCGA-31-1951-01A
0 years, female, white, stage:Stage IIIC, alive, 684 days
162.0
TCGA-23-1809-01A
0 years, female, white, stage:Stage IIC, alive, 16 days
161.4
TCGA-61-1910-01A
0 years, female, white, stage:Stage IIC, alive, 1127 days
161.0
TCGA-13-0923-01A
0 years, female, white, stage:Stage IIIC, alive, 2547 days
161.0
TCGA-24-0968-01A
0 years, female, white, stage:Stage IIIC, dead, 598 days
160.2
TCGA-13-1411-01A
0 years, female, white, stage:Stage IIIC, dead, 531 days
159.3
TCGA-24-2280-01A
0 years, female, white, stage:Stage IIIC, alive, 2143 days
159.3
TCGA-29-2428-01A
0 years, female, white, stage:Stage IIIC, alive, 1372 days
157.8
TCGA-13-1509-01A
0 years, female, white, stage:Stage IV, alive, 2438 days
157.2
TCGA-13-0916-01A
0 years, female, white, stage:Stage IIIC, alive, 1785 days
157.1
TCGA-57-1586-01A
0 years, female, white, stage:Stage IIIC, alive, 679 days
155.5
TCGA-29-1766-01A
0 years, female, white, stage:Stage IIIC, dead, 1199 days
155.0
TCGA-25-1320-01A
0 years, female, white, stage:Stage IIIC, dead, 1155 days
154.6
TCGA-30-1860-01A
0 years, female, white, stage:Stage IIIC, dead, 1366 days
154.6
TCGA-29-1690-01A
0 years, female, white, stage:Stage IIIC, dead, 1448 days
154.3
TCGA-13-0795-01A
0 years, female, white, stage:Stage IIIC, dead, 619 days
153.1
TCGA-04-1530-01A
0 years, female, white, stage:Stage IIIC, dead, 3622 days
152.9
TCGA-24-1471-01A
0 years, female, white, stage:Stage IIIC, alive, 36 days
151.2
TCGA-13-0727-01A
0 years, female, white, stage:Stage IIIC, dead, 462 days
150.8
TCGA-04-1343-01A
0 years, female, white, stage:Stage IV, dead, 361 days
149.9
TCGA-36-1569-01A
0 years, female, white, stage:Stage IIIC, alive, 885 days
149.0
TCGA-24-1419-01A
0 years, female, white, stage:Stage IIIC, alive, 239 days
148.2
TCGA-10-0938-01A
0 years, female, white, stage:Stage IIIC, dead, 636 days
147.2
TCGA-13-1501-01A
0 years, female, white, stage:Stage IV, dead, 1314 days
147.1
TCGA-23-1023-01A
0 years, female, white, stage:Stage IIIC, alive, 1233 days
147.1
TCGA-13-1477-01A
0 years, female, white, stage:Stage IV, dead, 1662 days
145.9
TCGA-23-1107-01A
0 years, female, white, stage:Stage IV, dead, 9 days
145.3
TCGA-24-2271-01A
0 years, female, asian, stage:Stage IIIC, dead, 962 days
143.4
TCGA-29-1688-01A
0 years, female, white, stage:Stage IIIC, dead, 2400 days
142.6
TCGA-29-2414-01A
0 years, female, white, stage:Stage IIIC, dead, 2621 days
141.9
TCGA-13-0765-01A
0 years, female, white, stage:Stage IIIC, dead, 1389 days
140.9
TCGA-25-2042-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 396 days
139.8
TCGA-13-0891-01A
0 years, female, white, stage:Stage IV, dead, 3128 days
138.0
TCGA-24-1565-01A
0 years, female, white, stage:Stage IIIC, dead, 312 days
138.0
TCGA-24-1844-01A
0 years, female, white, stage:Stage IIIC, alive, 113 days
136.5
TCGA-24-1425-01A
0 years, female, white, stage:Stage IIIC, alive, 181 days
133.2
TCGA-29-1781-01A
0 years, female, white, stage:Stage IIIC, alive, 255 days
132.9
TCGA-13-1507-01A
0 years, female, white, stage:Stage IIIC, dead, 1993 days
132.7
TCGA-24-2293-01A
0 years, female, white, stage:'--, dead, 506 days
131.8
TCGA-13-1488-01A
0 years, female, white, stage:Stage IV, dead, 2154 days
130.4
TCGA-25-1313-01A
0 years, female, white, stage:Stage IV, dead, 820 days
130.0
TCGA-13-1485-01A
0 years, female, white, stage:Stage IV, dead, 629 days
127.2
TCGA-29-1770-01A
0 years, female, white, stage:Stage IIIC, alive, 741 days
126.2
TCGA-24-1426-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
125.6
TCGA-13-0766-01A
0 years, female, white, stage:Stage IIIC, dead, 1725 days
125.4
TCGA-24-2035-01A
0 years, female, white, stage:Stage IIIC, dead, 857 days
125.2
TCGA-29-2427-01A
0 years, female, white, stage:Stage IIIC, alive, 1900 days
123.4
TCGA-25-1328-01A
0 years, female, white, stage:Stage IIIC, dead, 2009 days
123.1
TCGA-04-1332-01A
0 years, female, white, stage:Stage IIIC, dead, 1247 days
120.9
TCGA-13-0911-01A
0 years, female, white, stage:Stage IV, dead, 1355 days
117.3
TCGA-61-2008-01A
0 years, female, asian, stage:Stage IIC, alive, 932 days
117.2
TCGA-24-2281-01A
0 years, female, white, stage:Stage IIA, alive, 1357 days
116.9
TCGA-04-1338-01A
0 years, female, white, stage:Stage IIIC, alive, 1418 days
116.8
TCGA-23-1109-01A
0 years, female, white, stage:Stage IIIC, dead, 1562 days
116.1
TCGA-29-1761-01A
0 years, female, asian, stage:Stage IIIC, dead, 528 days
115.8
TCGA-10-0931-01A
0 years, female, white, stage:Stage IIIC, dead, 1000 days
115.7
TCGA-13-0726-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
115.1
TCGA-29-1693-01A
0 years, female, white, stage:Stage IIIC, alive, 3096 days
113.5
TCGA-24-1930-01A
0 years, female, white, stage:Stage IIIC, dead, 2467 days
111.7
TCGA-20-0991-01A
0 years, female, white, stage:Stage IIB, alive, 797 days
108.2
TCGA-29-1777-01A
0 years, female, white, stage:Stage IIIC, alive, 374 days
102.3
TCGA-13-1405-01A
0 years, female, white, stage:Stage IV, dead, 868 days
102.0
TCGA-29-1768-01A
0 years, female, white, stage:Stage IV, dead, 952 days
101.7
TCGA-24-1546-01A
0 years, female, white, stage:Stage IIIC, dead, 1955 days
97.6
TCGA-30-1892-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
93.0
TCGA-24-2038-01A
0 years, female, white, stage:Stage IIIA, dead, 1354 days
90.7
TCGA-31-1956-01A
0 years, female, white, stage:Stage IIIB, alive, 1342 days
88.8
TCGA-13-0768-01A
0 years, female, white, stage:Stage IIIC, dead, 1784 days
88.0
TCGA-25-1877-01A
0 years, female, white, stage:Stage IIIC, dead, 730 days
87.1
TCGA-61-1911-01A
0 years, female, white, stage:Stage IIA, alive, 1293 days
70.5
TCGA-13-0714-01A
0 years, female, white, stage:Stage IV, dead, 189 days
67.9
TCGA-24-1923-01A
0 years, female, white, stage:Stage IIIC, dead, 690 days
61.4
TCGA-30-1891-01A
0 years, female, white, stage:Stage IIIC, dead, 914 days
60.2
TCGA-09-2054-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 637 days
29.6
TCGA-61-1721-01A
0 years, female, white, stage:Stage IV, alive, 338 days
9.8
TCGA-61-2102-01A
0 years, female, white, stage:Stage IIIC, dead, 197 days
6.1
TCGA-09-1673-01A
0 years, female, white, stage:Stage IV, alive, 92 days
5.4
TCGA-20-1683-01A
0 years, female, white, stage:Stage IIIC, alive, 772 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EPCAM is not prognostic in Ovary Serous Cystadenocarcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
323.7
Number of samples
81
Samples
Sample
Description
TPM
DO46533
0 years, female, NA, stage:III, alive, 3667 days
807.7
DO46463
0 years, female, NA, stage:III, dead, 2451 days
749.0
DO46342
0 years, female, NA, stage:III, dead, 1398 days
743.2
DO46588
0 years, female, NA, stage:III, dead, 438 days
695.9
DO46329
0 years, female, NA, stage:III, dead, 1699 days
646.7
DO46458
0 years, female, NA, stage:IV, alive, 3787 days
640.2
DO46338
0 years, female, NA, stage:III, dead, 596 days
618.1
DO46336
0 years, female, NA, stage:IV, dead, 664 days
601.1
DO46606
0 years, female, NA, stage:III, alive, 804 days
579.7
DO46348
0 years, female, NA, stage:IV, dead, 287 days
568.1
DO46380
0 years, female, NA, stage:III, dead, 1423 days
559.7
DO46330
0 years, female, NA, stage:III, dead, 684 days
503.6
DO46436
0 years, female, NA, stage:III, alive, 3193 days
462.8
DO46394
0 years, female, NA, stage:IV, dead, 1039 days
447.9
DO46388
0 years, female, NA, stage:III, dead, 413 days
425.1
DO46591
0 years, female, NA, stage:III, dead, 195 days
424.0
DO46528
0 years, female, NA, stage:III, alive, 6139 days
418.7
DO46568
0 years, female, NA, stage:III, dead, 320 days
407.6
DO46432
0 years, female, NA, stage:III, alive, 2218 days
372.6
DO46443
0 years, female, NA, stage:III, dead, 2464 days
370.5
DO46346
0 years, female, NA, stage:III, dead, 1187 days
368.2
DO46513
0 years, female, NA, stage:IV, dead, 1883 days
367.4
DO46358
0 years, female, NA, stage:III, dead, 423 days
345.2
DO46561
0 years, female, NA, stage:III, dead, 195 days
341.0
DO46408
0 years, female, NA, stage:III, dead, 489 days
339.3
DO46376
0 years, female, NA, stage:III, dead, 1430 days
335.3
DO46448
0 years, female, NA, stage:III, dead, 654 days
332.5
DO46571
0 years, female, NA, stage:III, dead, 243 days
330.8
DO46404
0 years, female, NA, stage:III, dead, 690 days
328.4
DO46382
0 years, female, NA, stage:IV, dead, 311 days
327.8
DO46334
0 years, female, NA, stage:III, dead, 496 days
325.1
DO46518
0 years, female, NA, stage:III, alive, 2960 days
321.4
DO46523
0 years, female, NA, stage:IV, alive, 1873 days
319.8
DO46362
0 years, female, NA, stage:III, dead, 1639 days
316.2
DO46581
0 years, female, NA, stage:III, dead, 408 days
315.9
DO46597
0 years, female, NA, stage:III, dead, 393 days
315.2
DO46566
0 years, female, NA, stage:III, dead, 673 days
314.5
DO46428
0 years, female, NA, stage:IV, alive, 2644 days
311.0
DO46352
0 years, female, NA, stage:III, dead, 677 days
304.7
DO46328
0 years, female, NA, stage:III, dead, 972 days
303.2
DO46560
0 years, female, NA, stage:IV, dead, 286 days
296.8
DO46390
0 years, female, NA, stage:III, dead, 374 days
289.2
DO46372
0 years, female, NA, stage:III, dead, 1326 days
288.5
DO46396
0 years, female, NA, stage:III, dead, 583 days
288.3
DO46350
0 years, female, NA, stage:III, dead, 886 days
283.4
DO46400
0 years, female, NA, stage:III, dead, 719 days
281.7
DO46586
0 years, female, NA, stage:III, dead, 1019 days
278.1
DO46378
0 years, female, NA, stage:III, alive, 843 days
268.2
DO46356
0 years, female, NA, stage:III, dead, 911 days
255.7
DO46412
0 years, female, NA, stage:III, dead, 597 days
252.8
DO46364
0 years, female, NA, stage:III, dead, 806 days
250.3
DO46360
0 years, female, NA, stage:IV, dead, 1759 days
249.6
DO46402
0 years, female, NA, stage:III, dead, 511 days
247.0
DO46392
0 years, female, NA, stage:III, dead, 628 days
245.6
DO46354
0 years, female, NA, stage:III, dead, 843 days
241.3
DO46340
0 years, female, NA, stage:III, dead, 616 days
239.2
DO46611
0 years, female, NA, stage:III, dead, 734 days
235.9
DO46370
0 years, female, NA, stage:III, dead, 1727 days
235.4
DO46468
0 years, female, NA, stage:III, alive, 2776 days
228.9
DO46551
0 years, female, NA, stage:III, dead, 1055 days
227.2
DO46331
0 years, female, NA, stage:III, dead, 612 days
221.0
DO46374
0 years, female, NA, stage:III, dead, 1409 days
210.6
DO46508
0 years, female, NA, stage:III, dead, 2101 days
199.7
DO46576
0 years, female, NA, stage:III, alive, 133 days
198.2
DO46386
0 years, female, NA, stage:III, dead, 1162 days
197.9
DO46438
0 years, female, NA, stage:IV, alive, 2227 days
195.6
DO46384
0 years, female, NA, stage:III, dead, 614 days
195.5
DO46546
0 years, female, NA, stage:III, dead, 1889 days
194.9
DO46326
0 years, female, NA, stage:III, dead, 701 days
193.8
DO46344
0 years, female, NA, stage:III, dead, 642 days
189.1
DO46602
0 years, female, NA, stage:III, dead, 205 days
188.5
DO46327
0 years, female, NA, stage:III, dead, 184 days
183.7
DO46333
0 years, female, NA, stage:III, dead, 359 days
179.5
DO46368
0 years, female, NA, stage:III, dead, 2879 days
160.7
DO46538
0 years, female, NA, stage:III, dead, 1527 days
147.1
DO46325
0 years, female, NA, stage:III, dead, 477 days
123.7
DO46453
0 years, female, NA, stage:III, dead, 3294 days
113.9
DO46493
0 years, female, NA, stage:IV, alive, 839 days
111.9
DO46366
0 years, female, NA, stage:III, dead, 2054 days
92.9
DO46332
0 years, female, NA, stage:III, dead, 689 days
91.9
DO46398
0 years, female, NA, stage:III, alive, 437 days
43.7
Show allShow less
OVARY SEROUS CYSTADENOCARCINOMA - Protein relative expression (CPTAC)
Number of samples
108
Samples
Sample ID
Sample type
nRPX
2ed8beb2-bc63-4bad-b5fe-1916a0_D2
Tumor
2.0
e3ebe010-cd31-4b5d-8fcb-b7103b_D2
Tumor
0.7
e6850782-fd2a-4c53-b682-1852fe_D2
Tumor
0.6
fbb41c94-aabd-49cc-90b2-882c3e_D2
Tumor
0.5
51c1c79e-5a8e-4b0a-bf92-1c0cab_D2
Tumor
0.1
35a345a4-e954-4c81-ae3f-7797cd_D2
Tumor
0.1
42d860a3-8a0c-4c44-a09a-9ad8cf_D2
Tumor
0.1
8e17b45e-6a06-4e4e-913d-7b1edb_D2
Tumor
0.0
74a45e5a-a35a-4c60-a4b4-f3f5ea_D2
Tumor
0.0
af95e2c6-25c4-4ab8-bf06-3e15ff_D2
Tumor
0.0
1772e913-f62e-446a-8cf3-720348_D2
Tumor
0.0
285fed94-1495-448e-879b-b55de9_D2
Tumor
0.0
2b4ce90c-8036-4207-ac3e-54a76f_D2
Tumor
-0.1
e7b656bf-3c34-4ba1-bdf3-c7eefe_D2
Tumor
-0.1
7d953d1d-84b6-4ecd-b1d7-1ed865_D2
Tumor
-0.2
bd266bdd-12e4-42cb-9c49-911bfc_D2
Tumor
-0.2
d4791079-c826-4fc7-9d9b-ee20ba_D2
Tumor
-0.2
2dc28da8-7ff1-4b9b-b5bd-17cc25_D2
Tumor
-0.2
9c8e78bf-b03e-4ba0-9909-5ff070_D2
Tumor
-0.3
eb3f3494-7057-4afe-b212-e6e9a3_D2
Tumor
-0.3
1a10c200-3895-4648-b951-94f99f_D2
Tumor
-0.4
4ccb249a-6722-491e-97e9-e3b4e7_D2
Tumor
-0.4
5ea22f5e-307b-491d-801f-8b7fa6_D2
Tumor
-0.5
0cc794c3-5bf5-4621-b238-58a0f6_D2
Tumor
-0.5
a8853382-b726-4ce8-98d5-ca89df_D2
Tumor
-0.5
6319b36b-533c-4e86-8e12-80552e_D3
Tumor
-0.5
e9d416e7-f661-400a-896e-388545_D2
Tumor
-0.5
8d78194e-fbef-4819-a7b5-b73ae9_D2
Tumor
-0.5
efc971f8-54c5-4531-a792-705ecf_D2
Tumor
-0.6
7069e990-4a4e-4984-a66d-4d835a_D2
Tumor
-0.6
9e0d47e0-f633-468b-b82b-4d752d_D2
Tumor
-0.7
3a380577-c134-47ba-a1ce-988d7c_D2
Tumor
-0.7
7c7ce2d7-6c8a-424e-8e6c-d14ad1_D2
Tumor
-0.7
2224c03f-b7b1-4368-887e-2b4cdf_D2
Tumor
-0.8
79b60f32-6cca-4cb6-9a1e-22a3ac_D2
Tumor
-0.8
3490835c-c004-45ed-91f3-7c206f_D2
Tumor
-0.8
161317f3-1a39-438e-af45-cd2502_D2
Tumor
-0.8
05387aad-2a1f-42c2-8d6f-950598_D3
Tumor
-0.8
cfd76f9a-ce60-4ec7-8e6b-a8fc31_D3
Tumor
-0.9
f6c215ea-5381-4521-bb61-be8e97_D2
Tumor
-0.9
0c87932d-b6fd-4eb5-b86a-a34d07_D2
Tumor
-1.0
3dcf8b3c-c0c5-4dfa-9543-5d30fb_D2
Tumor
-1.0
256ac9f5-1e19-44b4-92fb-fef3fc_D2
Tumor
-1.0
52c064a7-78d9-4a1a-85b4-27c6d1_D2
Tumor
-1.0
1de8d3d8-fc0e-4be0-8aa7-127c7b_D2
Tumor
-1.0
2433b136-fc7b-4cea-b958-bc6efb_D2
Tumor
-1.0
7edfd606-4bee-4529-9fec-1ca7f0_D2
Normal
-1.0
c17b0ff9-9057-4848-a0cc-abb25f_D2
Tumor
-1.0
49bd51fe-48a1-4828-b66e-b30c38_D2
Tumor
-1.1
627e6e36-3dca-4ee5-9755-6f3510_D2
Tumor
-1.1
ce1e5dfc-2ef1-4633-af93-5ea4d9_D2
Tumor
-1.1
69d552be-7cb2-4bb4-b602-a27b3e_D2
Tumor
-1.1
2563cb02-d58a-4286-8634-7502cd_D2
Tumor
-1.1
50997c44-1c8b-4d34-b535-4a6cc2_D2
Tumor
-1.1
5c3971ee-87c7-4dff-b66e-f18892_D2
Tumor
-1.1
80873a0c-1f40-4d51-bab1-3f2071_D2
Tumor
-1.1
d109a3c0-350e-47f5-bda0-61899c_D2
Tumor
-1.2
3946a96c-e0ae-442f-83b4-a9350e_D2
Tumor
-1.2
558333b0-ea23-4303-9e3c-4932b1_D2
Tumor
-1.2
28d0abdb-f682-4bd3-9425-a9c508_D2
Tumor
-1.2
62f5840e-6cd7-4200-b651-645e53_D2
Tumor
-1.2
1556af7e-c2ae-4fce-9aae-87c459_D1_D2
Normal
-1.2
31c15e30-21d4-4843-bd4a-9cd0d8_D2
Normal
-1.2
3d3e1888-d67e-4c69-ba83-112d0f_D2
Tumor
-1.3
a03d1103-b809-42c4-ad5c-5aff58_D2
Tumor
-1.3
27f3ca2d-a86f-479d-8e7e-5307c7_D2
Tumor
-1.3
3fbf076a-824b-4eac-b6dc-bf5e59_D2
Normal
-1.3
91b287fd-eadb-442d-abcd-20b741_D2
Tumor
-1.3
1c9145ad-1981-4871-aa7e-8b11de_D2
Tumor
-1.3
76e77c6b-c80e-4391-bdbb-e1dcea_D2
Tumor
-1.4
927f0958-db5a-4bc5-92b7-2a3695_D2
Tumor
-1.4
10c2d629-0287-4511-ac25-f29031_D2
Tumor
-1.4
2115808b-6a0d-49bc-a8d7-b83bde_D2
Tumor
-1.4
fe83e13f-9754-403b-8f74-d6caf8_D2
Tumor
-1.5
a583d3ff-8165-43e9-b764-23b7ef_D1_D2
Normal
-1.5
8ed739dd-ae0f-4881-971a-db3cf4_D1_D2
Normal
-1.5
8234f8ea-bdbd-45b0-bd0b-16f1e7_D2
Tumor
-1.5
318d53c3-216b-4de1-a098-77d6dd_D2
Tumor
-1.5
092af714-b97a-457c-b0e9-8c20e8_D2
Normal
-1.6
46c73531-f531-4ec3-97fe-b39d9d_D2
Tumor
-1.6
1b2ab076-c72f-4bbe-b9f9-657d24_D2
Tumor
-1.6
3e746bea-ed68-40e6-b348-6ddf08_D2
Normal
-1.7
9a7a86d3-bbf2-4d36-941d-c75c03_D1_D2
Tumor
-1.7
eb0a53df-7620-4024-8d2d-051142_D2
Tumor
-1.7
347e379b-77c0-4dd3-aa25-18c9d1_D2
Tumor
-1.8
6e209757-a7f4-45af-b5f3-2ebc02_D2
Normal
-1.8
2b73e01c-347a-4dae-a71d-752aeb_D2
Normal
-1.8
6530147a-efe9-4df6-ac2f-03ece3_D2
Tumor
-1.8
340a3769-3031-41ae-bb08-a2f696_D2
Normal
-1.8
a65d8e76-640f-4341-a561-afbb57_D2
Normal
-1.8
15524912-685a-47ce-a824-567848_D2
Tumor
-1.9
08296da7-70ea-44df-8646-09f2cc_D2
Tumor
-2.0
61f76fe6-a1c6-41b8-bdc2-2f9209_D2
Normal
-2.0
0745488e-0bfb-4d1f-8228-dedf76_D1_D2
Normal
-2.0
21efd60f-6a31-4b98-9477-16a905_D2
Normal
-2.0
685ec3c2-e67a-40d3-9eb3-aa01c9_D1_D2
Normal
-2.0
b9c1f22e-61f7-45ed-b3b4-5094c7_D2
Normal
-2.1
2f901c90-617e-46da-9fac-d68369_D2
Tumor
-2.2
41d0619e-b299-42e2-ac32-29e784_D2
Tumor
-2.2
994f9b8e-46cb-413f-8ec8-2c2fed_D2
Normal
-2.2
e23eb014-69c1-460a-b9d4-9786c8_D2
Normal
-2.3
51a4ce2f-4166-4c6b-a7e0-942d0a_D2
Tumor
-2.3
9b90eb78-2f50-4aeb-b010-d642f9_D2
Tumor
-2.5
b22659b9-e12c-4725-a7db-a833de_D1_D2
Normal
-2.6
d38f40fb-dd78-43b2-8b7b-4b6977_D2
Tumor
-2.7
1db5574d-aca7-403c-8100-6e705f_D2
Normal
-2.9
a3a26070-fb84-406a-8280-d555e6_D2
Normal
-3.3
1abbcb28-f221-4cd4-8c01-37b9bb_D1_D2
Normal
-3.6
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OVARIAN CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.