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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSDL2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
42.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
185.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
163.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
144.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
138.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
132.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
130.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
119.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
115.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
113.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
112.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
109.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
105.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
103.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
103.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
102.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
101.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
98.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
98.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
97.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
96.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
90.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
89.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
87.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
85.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
85.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
84.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
83.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
82.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
80.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
79.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
78.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
78.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
77.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
77.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
76.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
76.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
76.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
75.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
72.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
71.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
70.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
70.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
70.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
70.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
70.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
69.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
68.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
68.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
66.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
65.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
65.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
65.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
65.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
64.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
63.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
63.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
62.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
62.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
62.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
61.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
61.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
61.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
60.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
60.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
60.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
59.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
59.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
59.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
58.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
58.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
58.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
58.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
58.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
58.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
57.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
57.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
57.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
57.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
56.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
55.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
55.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
54.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
54.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
54.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
53.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
53.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
53.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
53.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
53.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
52.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
52.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
52.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
52.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
52.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
52.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
51.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
51.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
51.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
51.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
51.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
50.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
50.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
50.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
49.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
49.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
49.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
49.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
48.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
48.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
48.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
48.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
48.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
47.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
47.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
47.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
47.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
46.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
46.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
46.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
46.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
46.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
45.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
45.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
45.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
45.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
44.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
44.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
44.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
44.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
43.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
43.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
43.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
43.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
43.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
43.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
43.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
42.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
42.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
42.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
42.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
42.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
42.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
42.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
42.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
42.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
41.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
41.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
41.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
41.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
41.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
41.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
41.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
40.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
40.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
40.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
40.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
40.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
40.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
40.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
40.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
39.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
39.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
39.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
38.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
38.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
38.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
38.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
38.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
37.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
37.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
37.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
37.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
37.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
37.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
37.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
36.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
36.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
36.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
36.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
36.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
36.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
36.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
35.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
35.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
35.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
35.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
35.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
35.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
34.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
34.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
34.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
34.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
34.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
33.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
33.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
33.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
33.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
33.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
33.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
33.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
33.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
33.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
32.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
32.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
32.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
32.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
31.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
31.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
31.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
31.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
30.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
30.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
30.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
30.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
29.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
29.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
29.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
29.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
29.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
28.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
28.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
28.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
28.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
27.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
27.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
27.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
27.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
27.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
27.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
27.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
26.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
26.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
26.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
26.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
26.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
26.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
26.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
26.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
26.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
26.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
25.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
25.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
25.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
25.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
25.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
25.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
25.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
24.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
24.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
24.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
24.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
24.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
23.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
23.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
23.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
23.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
23.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
22.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
22.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
21.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
21.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
20.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
19.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
18.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
18.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
17.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
17.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSDL2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
43.9
Number of samples
231
Samples
Sample
Description
TPM
DO48704
0 years, female, NA, stage:3, alive, 750 days
154.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
141.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
136.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
133.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
130.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
124.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
123.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
121.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
117.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
110.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
107.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
95.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
94.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
92.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
91.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
90.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
86.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
85.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
82.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
81.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
80.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
80.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
80.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
77.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
76.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
73.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
72.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
71.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
69.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
69.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
69.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
67.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
66.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
66.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
66.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
65.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
64.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
64.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
62.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
62.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
61.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
60.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
60.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
59.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
59.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
58.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
58.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
58.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
57.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
57.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
57.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
56.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
56.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
55.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
55.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
54.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
54.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
54.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
53.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
52.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
50.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
50.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
50.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
50.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
50.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
50.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
49.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
49.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
49.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
49.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
48.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
48.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
48.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
47.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
47.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
47.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
47.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
47.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
46.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
46.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
46.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
46.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
46.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
45.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
45.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
45.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
45.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
45.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
44.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
44.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
44.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
44.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
44.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
44.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
44.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
44.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
43.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
43.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
43.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
43.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
43.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
42.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
42.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
42.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
41.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
41.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
41.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
41.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
41.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
41.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
40.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
40.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
40.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
39.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
39.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
39.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
39.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
39.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
38.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
38.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
38.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
38.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
38.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
38.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
37.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
37.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
37.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
37.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
36.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
36.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
35.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
35.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
34.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
34.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
34.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
33.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
33.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
33.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
33.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
32.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
32.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
32.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
32.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
32.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
32.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
32.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
31.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
31.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
31.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
31.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
30.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
30.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
30.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
30.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
30.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
30.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
30.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
29.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
29.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
29.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
28.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
28.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
27.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
26.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
26.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
25.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
22.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
20.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.7
231
Tumor
1.0
435
Tumor
1.0
341
Tumor
0.9
911
Tumor
0.8
465
Tumor
0.8
915
Tumor
0.7
1041
Tumor
0.7
867
Tumor
0.7
123
Tumor
0.6
171
Tumor
0.6
1043
Tumor
0.6
922
Normal
0.6
513
Tumor
0.6
786
Normal
0.5
462
Normal
0.5
571
Tumor
0.5
695
Tumor
0.5
411
Tumor
0.5
1046
Normal
0.5
451
Tumor
0.4
127
Tumor
0.4
452
Normal
0.4
356
Normal
0.4
528
Normal
0.4
715
Tumor
0.4
918
Normal
0.4
955
Tumor
0.4
865
Tumor
0.4
328
Normal
0.4
727
Tumor
0.4
477
Tumor
0.4
526
Normal
0.4
952
Normal
0.4
1016
Normal
0.4
868
Normal
0.4
1015
Tumor
0.4
738
Normal
0.4
713
Tumor
0.4
636
Normal
0.4
755
Tumor
0.4
742
Normal
0.3
944
Normal
0.3
557
Tumor
0.3
981
Tumor
0.3
128
Normal
0.3
746
Normal
0.3
884
Normal
0.3
964
Normal
0.3
393
Tumor
0.3
686
Normal
0.3
568
Normal
0.3
1045
Tumor
0.3
648
Normal
0.3
824
Normal
0.3
1028
Normal
0.3
618
Normal
0.3
534
Normal
0.3
866
Normal
0.3
558
Normal
0.3
698
Normal
0.3
921
Tumor
0.3
924
Normal
0.3
862
Normal
0.3
466
Normal
0.3
436
Normal
0.3
696
Normal
0.3
968
Normal
0.3
615
Tumor
0.3
424
Normal
0.3
414
Normal
0.3
861
Tumor
0.3
572
Normal
0.2
716
Normal
0.2
564
Normal
0.2
628
Normal
0.2
515
Tumor
0.2
172
Normal
0.2
481
Tumor
0.2
428
Normal
0.2
514
Normal
0.2
642
Normal
0.2
488
Normal
0.2
1032
Normal
0.2
1027
Tumor
0.2
474
Normal
0.2
186
Normal
0.2
851
Tumor
0.2
778
Normal
0.2
864
Normal
0.2
212
Normal
0.2
984
Normal
0.2
124
Normal
0.2
1022
Normal
0.2
482
Normal
0.2
494
Normal
0.2
364
Normal
0.2
132
Normal
0.2
352
Normal
0.2
344
Normal
0.2
816
Normal
0.2
464
Normal
0.2
926
Normal
0.2
376
Normal
0.2
863
Tumor
0.2
362
Normal
0.2
616
Normal
0.2
873
Tumor
0.2
218
Normal
0.2
982
Normal
0.2
546
Normal
0.2
396
Normal
0.2
261
Tumor
0.2
978
Normal
0.2
484
Normal
0.2
196
Normal
0.2
258
Normal
0.2
641
Tumor
0.2
446
Normal
0.2
448
Normal
0.1
538
Normal
0.1
745
Tumor
0.1
967
Tumor
0.1
147
Tumor
0.1
286
Normal
0.1
874
Normal
0.1
145
Tumor
0.1
412
Normal
0.1
665
Tumor
0.1
314
Normal
0.1
461
Tumor
0.1
858
Normal
0.1
756
Normal
0.1
392
Normal
0.1
278
Normal
0.1
388
Normal
0.1
554
Normal
0.1
232
Normal
0.1
423
Tumor
0.1
111
Normal
0.1
394
Normal
0.1
342
Normal
0.1
332
Normal
0.1
723
Tumor
0.1
1044
Normal
0.1
426
Normal
0.1
112
Tumor
0.1
416
Normal
0.1
938
Normal
0.1
148
Normal
0.1
976
Normal
0.1
354
Normal
0.1
714
Normal
0.1
358
Normal
0.1
567
Tumor
0.1
882
Normal
0.1
262
Normal
0.1
483
Tumor
0.1
818
Normal
0.1
162
Normal
0.1
916
Normal
0.1
664
Normal
0.1
114
Normal
0.1
913
Tumor
0.1
1031
Tumor
0.1
1014
Normal
0.1
361
Tumor
0.1
977
Tumor
0.1
443
Tumor
0.1
647
Tumor
0.1
327
Tumor
0.1
463
Tumor
0.1
468
Normal
0.0
472
Normal
0.0
912
Normal
0.0
487
Tumor
0.0
126
Normal
0.0
257
Tumor
0.0
432
Normal
0.0
954
Normal
0.0
368
Normal
0.0
963
Tumor
0.0
537
Tumor
0.0
728
Normal
0.0
222
Normal
0.0
365
Tumor
0.0
635
Tumor
0.0
518
Normal
0.0
136
Normal
0.0
298
Normal
0.0
517
Tumor
0.0
574
Normal
0.0
1042
Normal
0.0
685
Tumor
0.0
914
Normal
0.0
721
Tumor
0.0
1026
Normal
0.0
878
Normal
0.0
563
Tumor
0.0
966
Normal
0.0
722
Normal
0.0
138
Normal
0.0
422
Normal
-0.1
214
Normal
-0.1
113
Tumor
-0.1
142
Normal
-0.1
312
Normal
-0.1
956
Normal
-0.1
666
Normal
-0.1
741
Tumor
-0.1
662
Normal
-0.1
852
Normal
-0.1
271
Tumor
-0.1
421
Tumor
-0.1
785
Tumor
-0.1
227
Tumor
-0.1
815
Tumor
-0.1
958
Normal
-0.1
268
Normal
-0.1
284
Normal
-0.1
524
Normal
-0.1
187
Tumor
-0.1
272
Normal
-0.1
195
Tumor
-0.1
724
Normal
-0.1
925
Tumor
-0.1
141
Tumor
-0.1
267
Tumor
-0.1
516
Normal
-0.1
883
Tumor
-0.1
1025
Tumor
-0.1
744
Normal
-0.1
191
Tumor
-0.1
777
Tumor
-0.1
415
Tumor
-0.1
386
Normal
-0.2
953
Tumor
-0.2
923
Tumor
-0.2
433
Tumor
-0.2
951
Tumor
-0.2
471
Tumor
-0.2
672
Normal
-0.2
553
Tumor
-0.2
434
Normal
-0.2
366
Normal
-0.2
228
Normal
-0.2
391
Tumor
-0.2
857
Tumor
-0.2
188
Normal
-0.2
224
Normal
-0.3
353
Tumor
-0.3
277
Tumor
-0.3
817
Tumor
-0.3
427
Tumor
-0.3
498
Normal
-0.3
937
Tumor
-0.3
478
Normal
-0.3
456
Normal
-0.3
384
Normal
-0.3
363
Tumor
-0.3
617
Tumor
-0.3
444
Normal
-0.3
492
Normal
-0.3
185
Tumor
-0.3
497
Tumor
-0.3
965
Tumor
-0.3
533
Tumor
-0.4
221
Tumor
-0.4
823
Tumor
-0.4
357
Tumor
-0.4
217
Tumor
-0.4
161
Tumor
-0.4
313
Tumor
-0.4
146
Normal
-0.4
223
Tumor
-0.4
491
Tumor
-0.4
536
Normal
-0.4
192
Normal
-0.5
447
Tumor
-0.5
975
Tumor
-0.5
573
Tumor
-0.5
493
Tumor
-0.5
523
Tumor
-0.5
663
Tumor
-0.5
425
Tumor
-0.5
383
Tumor
-0.5
137
Tumor
-0.6
881
Tumor
-0.6
351
Tumor
-0.6
1013
Tumor
-0.6
473
Tumor
-0.6
943
Tumor
-0.6
395
Tumor
-0.6
957
Tumor
-0.6
135
Tumor
-0.6
983
Tumor
-0.7
1021
Tumor
-0.7
697
Tumor
-0.7
297
Tumor
-0.7
355
Tumor
-0.7
671
Tumor
-0.7
445
Tumor
-0.8
413
Tumor
-0.8
131
Tumor
-0.8
125
Tumor
-0.8
877
Tumor
-0.8
431
Tumor
-0.8
814
Normal
-0.8
525
Tumor
-0.8
285
Tumor
-0.8
467
Tumor
-0.8
545
Tumor
-0.9
213
Tumor
-0.9
661
Tumor
-0.9
527
Tumor
-1.0
737
Tumor
-1.0
813
Tumor
-1.0
343
Tumor
-1.0
917
Tumor
-1.0
331
Tumor
-1.1
535
Tumor
-1.1
367
Tumor
-1.1
455
Tumor
-1.1
387
Tumor
-1.2
743
Tumor
-1.3
385
Tumor
-1.3
375
Tumor
-1.3
311
Tumor
-1.5
283
Tumor
-1.5
211
Tumor
-2.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
