MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.3 nTPM
HPA Brain:61.1 nTPM
GTEx:36.3 nTPM
FANTOM5:50.3 Scaled Tags Per Million
Pig:26.8 nTPM
Mouse:37.0 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 61.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.1
2019 Male, age 18, unknown 69.3
2666 Male, age 74, left hemisphere 68.2
2586 Male, age 75, left hemisphere 62.4
2219 Male, age 76, both hemispheres 60.2
1827 Male, age 72, unknown 52.5
2411 Female, age 72, unknown 49.7
2828 Female, age 72, unknown 46.6
1830 Male, age 51, unknown 45.3
1870 Female, age 42, unknown 44.4
1833 Male, age 53, unknown 42.8
Dorsal raphe nucleus
nTPM: 46.8
2047 Male, age 72, unknown 54.5
2750 Male, age 76, both hemispheres 53.2
1828 Male, age 53, unknown 51.1
2298 Female, age 72, unknown 39.8
2016 Female, age 72, unknown 35.5
Inferior colliculus
nTPM: 48.5
1890 Male, age 53, unknown 53.8
1848 Female, age 42, unknown 48.9
2097 Female, age 72, unknown 48.8
2849 Male, age 72, unknown 42.7
Median raphe nucleus
nTPM: 51.6
2220 Male, age 76, midline 51.6
Periaquaductal grey, anterior
nTPM: 48.9
1947 Male, age 18, unknown 52.2
1795 Male, age 51, unknown 48.5
2502 Female, age 75, unknown 45.9
Periaquaductal grey, dorsal
nTPM: 38.9
1831 Male, age 72, unknown 41.1
1840 Male, age 53, unknown 40.4
2464 Female, age 72, unknown 37.7
2850 Male, age 76, both hemispheres 36.4
Periaquaductal grey, lateral
nTPM: 35.7
2053 Male, age 18, unknown 38.5
2272 Male, age 74, both hemispheres 37.2
2140 Male, age 76, both hemispheres 31.4
Pretectal area
nTPM: 59.0
2007 Male, age 72, unknown 91.8
1944 Female, age 72, unknown 89.8
1817 Female, age 42, unknown 84.6
1816 Male, age 51, unknown 81.4
1815 Male, age 53, unknown 71.1
2316 Male, age 76, right hemisphere 39.8
2407 Male, age 75, both hemispheres 39.2
2825 Male, age 18, unknown 38.8
2224 Female, age 72, unknown 38.5
2273 Male, age 74, both hemispheres 37.3
2667 Female, age 75, unknown 37.2
Red nucleus
nTPM: 52.5
2785 Male, age 18, unknown 62.7
1821 Female, age 72, unknown 62.4
2588 Male, age 74, left hemisphere 59.4
2584 Male, age 75, left hemisphere 58.3
2725 Female, age 75, unknown 54.3
1904 Male, age 53, unknown 52.5
1865 Male, age 51, unknown 49.5
2503 Female, age 72, unknown 48.8
2823 Male, age 76, right hemisphere 48.2
2769 Male, age 72, unknown 45.4
1954 Female, age 42, unknown 45.3
2227 Male, age 72, unknown 43.0
Substantia nigra
nTPM: 61.1
1889 Female, age 72, unknown 74.0
1851 Male, age 51, unknown 73.8
1941 Male, age 53, unknown 73.0
1916 Female, age 42, unknown 71.3
2583 Male, age 75, right hemisphere 58.1
2665 Male, age 74, both hemispheres 55.8
2241 Male, age 72, unknown 54.4
2590 Female, age 75, unknown 54.2
2699 Male, age 18, unknown 48.8
2409 Female, age 72, unknown 47.6
Superior colliculus
nTPM: 53.3
2668 Female, age 75, unknown 85.9
2087 Female, age 72, unknown 76.0
1895 Male, age 76, right hemisphere 53.6
1913 Female, age 42, unknown 51.0
2261 Male, age 18, unknown 49.6
1796 Male, age 53, unknown 45.8
2587 Male, age 74, left hemisphere 45.2
1995 Male, age 72, unknown 43.6
2664 Male, age 75, both hemispheres 42.3
1839 Male, age 51, unknown 39.9
Ventral tegmental area
nTPM: 50.8
2410 Female, age 72, unknown 64.0
2218 Male, age 76, both hemispheres 60.7
1915 Female, age 42, unknown 51.6
2223 Female, age 72, unknown 50.3
1942 Male, age 51, unknown 44.0
2021 Male, age 53, unknown 34.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 36.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.3
Samples: 139

Max nTPM: 71.3
Min nTPM: 20.1
Std nTPM: 9.7
Median nTPM: 34.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 71.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 66.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 66.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 62.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 61.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 59.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 59.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 56.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 52.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 51.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 50.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 50.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.3
FF:10158-103A5 76 years, female 50.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.3
Samples: 4

Max nTPM: 27.2
Min nTPM: 23.0
Sample A Female 27.2
Sample B Female 25.2
Sample C Male 23.0
Sample D Male 25.9
Midbrain
nTPM: 26.8
Samples: 4

Max nTPM: 33.0
Min nTPM: 22.5
Sample A Female 33.0
Sample B Female 25.5
Sample C Male 26.1
Sample D Male 22.5
Periaqueductal gray
nTPM: 22.2
Samples: 3

Max nTPM: 23.2
Min nTPM: 21.6
Sample B Female 23.2
Sample C Male 21.8
Sample D Male 21.6
Superior colliculi
nTPM: 26.7
Samples: 4

Max nTPM: 30.9
Min nTPM: 23.0
Sample A Female 26.3
Sample B Female 26.4
Sample C Male 30.9
Sample D Male 23.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 37.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.1
Samples: 4

Max nTPM: 40.0
Min nTPM: 34.5
Sample A Male 40.0
Sample B Male 34.5
Sample C Female 37.1
Sample D Female 36.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68523324 Antisense, RP_050118_02_E08, Mouse strain C57BL/6J (56 days, male) 0.2
71015806 Antisense, RP_050725_02_H04, Mouse strain C57BL/6J (56 days, male) 0.1

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