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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NSL1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
54.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
49.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
45.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
45.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
43.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
43.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
42.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
40.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
38.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
37.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
36.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
34.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
34.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
34.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
33.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
33.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
31.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
31.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
30.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
30.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
29.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
29.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
27.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
26.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
26.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
26.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
25.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
25.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
23.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
22.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
22.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NSL1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.1
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
3.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
2.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
2.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
2.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
2.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
2.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
2.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
2.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
2.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
2.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
1.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
1.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
1.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
1.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
1.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
1.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
1.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
411
Tumor
1.4
957
Tumor
1.3
865
Tumor
1.2
1013
Tumor
1.1
497
Tumor
1.0
977
Tumor
0.9
953
Tumor
0.9
343
Tumor
0.9
951
Tumor
0.9
695
Tumor
0.8
357
Tumor
0.8
431
Tumor
0.8
1031
Tumor
0.8
131
Tumor
0.7
545
Tumor
0.7
523
Tumor
0.7
313
Tumor
0.7
277
Tumor
0.7
921
Tumor
0.7
647
Tumor
0.6
355
Tumor
0.6
618
Normal
0.6
375
Tumor
0.6
743
Tumor
0.5
171
Tumor
0.5
553
Tumor
0.5
815
Tumor
0.5
211
Tumor
0.5
527
Tumor
0.5
873
Tumor
0.5
923
Tumor
0.5
351
Tumor
0.4
817
Tumor
0.4
937
Tumor
0.4
616
Normal
0.4
161
Tumor
0.4
463
Tumor
0.4
493
Tumor
0.4
393
Tumor
0.4
663
Tumor
0.4
963
Tumor
0.4
881
Tumor
0.4
965
Tumor
0.4
465
Tumor
0.4
877
Tumor
0.3
1021
Tumor
0.3
341
Tumor
0.3
814
Normal
0.3
221
Tumor
0.3
473
Tumor
0.3
271
Tumor
0.3
283
Tumor
0.3
535
Tumor
0.3
445
Tumor
0.3
813
Tumor
0.3
943
Tumor
0.3
715
Tumor
0.3
477
Tumor
0.3
571
Tumor
0.3
983
Tumor
0.3
685
Tumor
0.3
487
Tumor
0.3
1045
Tumor
0.2
913
Tumor
0.2
432
Normal
0.2
741
Tumor
0.2
123
Tumor
0.2
425
Tumor
0.2
491
Tumor
0.2
863
Tumor
0.2
261
Tumor
0.2
145
Tumor
0.2
147
Tumor
0.2
141
Tumor
0.2
213
Tumor
0.2
823
Tumor
0.1
135
Tumor
0.1
331
Tumor
0.1
857
Tumor
0.1
466
Normal
0.1
132
Normal
0.1
435
Tumor
0.1
883
Tumor
0.1
112
Tumor
0.1
525
Tumor
0.1
915
Tumor
0.1
125
Tumor
0.1
478
Normal
0.1
192
Normal
0.1
481
Tumor
0.1
954
Normal
0.1
955
Tumor
0.1
146
Normal
0.1
744
Normal
0.1
966
Normal
0.1
636
Normal
0.1
138
Normal
0.1
944
Normal
0.1
272
Normal
0.1
755
Tumor
0.1
258
Normal
0.1
573
Tumor
0.1
661
Tumor
0.1
517
Tumor
0.1
533
Tumor
0.1
142
Normal
0.1
642
Normal
0.1
967
Tumor
0.1
137
Tumor
0.1
716
Normal
0.1
483
Tumor
0.1
665
Tumor
0.0
975
Tumor
0.0
267
Tumor
0.0
227
Tumor
0.0
452
Normal
0.0
981
Tumor
0.0
737
Tumor
0.0
724
Normal
0.0
217
Tumor
0.0
314
Normal
0.0
394
Normal
0.0
938
Normal
0.0
231
Tumor
0.0
697
Tumor
0.0
1041
Tumor
0.0
756
Normal
0.0
746
Normal
0.0
428
Normal
0.0
1043
Tumor
0.0
917
Tumor
0.0
344
Normal
0.0
392
Normal
0.0
958
Normal
0.0
482
Normal
0.0
1042
Normal
0.0
443
Tumor
0.0
127
Tumor
0.0
492
Normal
0.0
461
Tumor
0.0
364
Normal
0.0
136
Normal
0.0
818
Normal
0.0
721
Tumor
0.0
851
Tumor
0.0
424
Normal
0.0
723
Tumor
0.0
413
Tumor
-0.1
471
Tumor
-0.1
777
Tumor
-0.1
1032
Normal
-0.1
434
Normal
-0.1
414
Normal
-0.1
447
Tumor
-0.1
446
Normal
-0.1
297
Tumor
-0.1
964
Normal
-0.1
515
Tumor
-0.1
433
Tumor
-0.1
858
Normal
-0.1
361
Tumor
-0.1
516
Normal
-0.1
468
Normal
-0.1
111
Normal
-0.1
714
Normal
-0.1
956
Normal
-0.1
662
Normal
-0.1
474
Normal
-0.1
824
Normal
-0.1
385
Tumor
-0.1
268
Normal
-0.1
467
Tumor
-0.1
968
Normal
-0.1
924
Normal
-0.1
464
Normal
-0.1
391
Tumor
-0.1
367
Tumor
-0.1
727
Tumor
-0.1
538
Normal
-0.1
188
Normal
-0.1
518
Normal
-0.1
436
Normal
-0.1
186
Normal
-0.1
363
Tumor
-0.1
537
Tumor
-0.1
498
Normal
-0.1
128
Normal
-0.1
455
Tumor
-0.1
778
Normal
-0.1
412
Normal
-0.1
191
Tumor
-0.1
1022
Normal
-0.1
526
Normal
-0.1
232
Normal
-0.2
187
Tumor
-0.2
285
Tumor
-0.2
816
Normal
-0.2
195
Tumor
-0.2
262
Normal
-0.2
514
Normal
-0.2
426
Normal
-0.2
546
Normal
-0.2
472
Normal
-0.2
648
Normal
-0.2
742
Normal
-0.2
738
Normal
-0.2
686
Normal
-0.2
628
Normal
-0.2
185
Tumor
-0.2
386
Normal
-0.2
124
Normal
-0.2
352
Normal
-0.2
416
Normal
-0.2
148
Normal
-0.2
914
Normal
-0.2
513
Tumor
-0.2
713
Tumor
-0.2
666
Normal
-0.2
444
Normal
-0.2
567
Tumor
-0.2
451
Tumor
-0.2
524
Normal
-0.2
415
Tumor
-0.2
671
Tumor
-0.2
536
Normal
-0.2
554
Normal
-0.2
861
Tumor
-0.2
916
Normal
-0.2
852
Normal
-0.2
462
Normal
-0.2
162
Normal
-0.2
1027
Tumor
-0.2
528
Normal
-0.2
114
Normal
-0.2
534
Normal
-0.2
557
Tumor
-0.2
922
Normal
-0.2
422
Normal
-0.2
494
Normal
-0.2
383
Tumor
-0.2
786
Normal
-0.2
456
Normal
-0.2
952
Normal
-0.2
328
Normal
-0.2
423
Tumor
-0.3
218
Normal
-0.3
918
Normal
-0.3
113
Tumor
-0.3
172
Normal
-0.3
284
Normal
-0.3
696
Normal
-0.3
926
Normal
-0.3
867
Tumor
-0.3
978
Normal
-0.3
1015
Tumor
-0.3
396
Normal
-0.3
196
Normal
-0.3
366
Normal
-0.3
356
Normal
-0.3
126
Normal
-0.3
664
Normal
-0.3
1028
Normal
-0.3
563
Tumor
-0.3
332
Normal
-0.3
387
Tumor
-0.3
342
Normal
-0.3
976
Normal
-0.3
224
Normal
-0.3
286
Normal
-0.3
365
Tumor
-0.3
874
Normal
-0.3
488
Normal
-0.3
745
Tumor
-0.3
222
Normal
-0.3
214
Normal
-0.3
1026
Normal
-0.3
388
Normal
-0.3
212
Normal
-0.3
785
Tumor
-0.4
257
Tumor
-0.4
615
Tumor
-0.4
298
Normal
-0.4
862
Normal
-0.4
448
Normal
-0.4
558
Normal
-0.4
912
Normal
-0.4
312
Normal
-0.4
278
Normal
-0.4
882
Normal
-0.4
722
Normal
-0.4
572
Normal
-0.4
728
Normal
-0.4
384
Normal
-0.4
362
Normal
-0.4
1014
Normal
-0.4
925
Tumor
-0.4
641
Tumor
-0.4
864
Normal
-0.4
672
Normal
-0.4
984
Normal
-0.4
395
Tumor
-0.4
568
Normal
-0.4
427
Tumor
-0.4
311
Tumor
-0.4
884
Normal
-0.5
698
Normal
-0.5
376
Normal
-0.5
868
Normal
-0.5
878
Normal
-0.5
223
Tumor
-0.5
911
Tumor
-0.5
484
Normal
-0.5
564
Normal
-0.5
228
Normal
-0.5
421
Tumor
-0.5
1025
Tumor
-0.5
358
Normal
-0.5
327
Tumor
-0.5
354
Normal
-0.5
574
Normal
-0.5
1046
Normal
-0.6
866
Normal
-0.6
1044
Normal
-0.6
1016
Normal
-0.6
353
Tumor
-0.7
982
Normal
-0.7
635
Tumor
-0.7
368
Normal
-0.8
627
Tumor
-0.8
617
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
