We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SYF2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
65.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
61.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
61.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
60.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
59.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
56.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
55.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
55.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
54.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
54.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
52.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
51.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
50.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
50.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
49.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
48.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
48.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
47.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
46.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
46.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
45.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
45.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
45.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
45.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
44.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
44.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
43.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
43.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
43.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
42.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
42.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
41.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
41.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
41.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
40.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
40.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
40.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
39.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
39.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
39.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
39.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
38.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
38.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
38.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
38.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
38.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
37.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
37.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
37.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
37.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
37.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
36.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
36.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
36.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
36.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
36.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
36.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
36.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
35.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
35.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
35.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
35.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
35.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
35.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
34.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
34.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
34.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
34.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
34.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
34.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
34.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
33.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
33.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
33.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
33.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
33.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
33.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
33.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
33.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
33.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
32.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
32.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
32.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
32.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
31.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
31.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
31.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
31.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
31.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
31.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
31.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
31.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
30.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
30.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
30.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
30.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
30.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
30.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
30.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
30.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
30.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
29.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
29.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
29.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
29.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
29.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
29.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
29.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
29.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
29.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
29.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
28.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
28.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
28.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
28.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
28.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
28.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
28.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
28.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
28.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
28.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
28.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
28.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
27.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
27.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
27.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
27.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
27.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
27.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
27.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
27.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
27.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
26.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
26.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
26.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
26.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
26.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
26.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
26.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
26.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
26.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
25.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
25.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
25.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
25.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
25.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
25.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
25.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
25.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
25.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
25.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
25.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
24.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
24.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
24.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
24.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
24.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
24.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
24.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
24.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
24.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
23.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
23.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
23.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
23.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
23.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
23.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
22.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
22.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
22.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
22.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
22.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
22.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
22.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
22.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
21.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
21.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
21.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
21.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
21.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
21.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
21.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
21.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
20.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
20.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
20.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
19.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
19.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
18.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
18.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
17.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
17.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
16.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SYF2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.8
Number of samples
231
Samples
Sample
Description
TPM
DO50814
0 years, male, NA, stage:3, alive, 420 days
52.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
52.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
50.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
46.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
44.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
43.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
42.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
42.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
42.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
41.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
40.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
40.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
37.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
36.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
36.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
36.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
36.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
35.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
35.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
35.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
35.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
34.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
34.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
34.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
34.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
33.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
33.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
33.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
32.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
32.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
32.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
32.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
32.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
31.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
31.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
30.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
30.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
30.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
29.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
29.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
29.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
29.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
29.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
28.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
28.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
27.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
27.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
27.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
26.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
26.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
26.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
25.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
24.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
24.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
24.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
24.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
23.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
23.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
23.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
22.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
20.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
497
Tumor
0.9
1027
Tumor
0.9
1021
Tumor
0.7
425
Tumor
0.7
1013
Tumor
0.7
965
Tumor
0.7
863
Tumor
0.7
977
Tumor
0.7
741
Tumor
0.7
355
Tumor
0.7
727
Tumor
0.6
877
Tumor
0.6
391
Tumor
0.6
943
Tumor
0.5
964
Normal
0.5
528
Normal
0.5
517
Tumor
0.4
536
Normal
0.4
724
Normal
0.4
867
Tumor
0.4
487
Tumor
0.4
447
Tumor
0.4
1045
Tumor
0.4
951
Tumor
0.4
131
Tumor
0.4
912
Normal
0.4
534
Normal
0.4
883
Tumor
0.4
958
Normal
0.3
1046
Normal
0.3
573
Tumor
0.3
661
Tumor
0.3
953
Tumor
0.3
884
Normal
0.3
983
Tumor
0.3
744
Normal
0.3
1041
Tumor
0.3
917
Tumor
0.3
493
Tumor
0.3
227
Tumor
0.3
461
Tumor
0.3
923
Tumor
0.3
515
Tumor
0.3
433
Tumor
0.3
112
Tumor
0.3
211
Tumor
0.3
477
Tumor
0.3
513
Tumor
0.3
431
Tumor
0.3
283
Tumor
0.3
938
Normal
0.3
478
Normal
0.3
865
Tumor
0.3
981
Tumor
0.3
695
Tumor
0.3
351
Tumor
0.3
698
Normal
0.3
432
Normal
0.3
925
Tumor
0.3
481
Tumor
0.3
967
Tumor
0.2
385
Tumor
0.2
615
Tumor
0.2
966
Normal
0.2
984
Normal
0.2
963
Tumor
0.2
388
Normal
0.2
395
Tumor
0.2
926
Normal
0.2
882
Normal
0.2
1044
Normal
0.2
976
Normal
0.2
415
Tumor
0.2
861
Tumor
0.2
498
Normal
0.2
141
Tumor
0.2
413
Tumor
0.2
411
Tumor
0.2
616
Normal
0.2
171
Tumor
0.2
424
Normal
0.2
663
Tumor
0.2
968
Normal
0.2
866
Normal
0.2
365
Tumor
0.2
448
Normal
0.2
874
Normal
0.2
1014
Normal
0.2
881
Tumor
0.2
818
Normal
0.2
918
Normal
0.2
456
Normal
0.2
571
Tumor
0.2
394
Normal
0.2
428
Normal
0.2
468
Normal
0.2
978
Normal
0.2
466
Normal
0.2
462
Normal
0.2
341
Tumor
0.2
916
Normal
0.2
232
Normal
0.2
922
Normal
0.2
161
Tumor
0.2
728
Normal
0.2
492
Normal
0.2
525
Tumor
0.2
911
Tumor
0.2
952
Normal
0.2
672
Normal
0.2
473
Tumor
0.2
685
Tumor
0.2
231
Tumor
0.1
527
Tumor
0.1
426
Normal
0.1
488
Normal
0.1
873
Tumor
0.1
647
Tumor
0.1
546
Normal
0.1
482
Normal
0.1
367
Tumor
0.1
924
Normal
0.1
435
Tumor
0.1
436
Normal
0.1
955
Tumor
0.1
742
Normal
0.1
737
Tumor
0.1
572
Normal
0.1
975
Tumor
0.1
223
Tumor
0.1
716
Normal
0.1
915
Tumor
0.1
467
Tumor
0.1
723
Tumor
0.1
414
Normal
0.1
857
Tumor
0.1
446
Normal
0.1
313
Tumor
0.1
396
Normal
0.1
1032
Normal
0.1
617
Tumor
0.1
444
Normal
0.1
146
Normal
0.1
484
Normal
0.1
445
Tumor
0.1
852
Normal
0.1
1031
Tumor
0.1
862
Normal
0.1
982
Normal
0.1
535
Tumor
0.1
1015
Tumor
0.1
422
Normal
0.1
944
Normal
0.1
483
Tumor
0.1
563
Tumor
0.1
913
Tumor
0.1
1026
Normal
0.1
464
Normal
0.1
868
Normal
0.1
285
Tumor
0.1
471
Tumor
0.1
387
Tumor
0.1
142
Normal
0.1
416
Normal
0.1
386
Normal
0.1
864
Normal
0.1
491
Tumor
0.1
222
Normal
0.1
368
Normal
0.1
1042
Normal
0.1
824
Normal
0.1
494
Normal
0.1
192
Normal
0.1
443
Tumor
0.1
327
Tumor
0.1
743
Tumor
0.1
558
Normal
0.1
878
Normal
0.1
756
Normal
0.1
257
Tumor
0.1
268
Normal
0.1
738
Normal
0.1
364
Normal
0.1
635
Tumor
0.1
434
Normal
0.0
228
Normal
0.0
125
Tumor
0.0
954
Normal
0.0
921
Tumor
0.0
721
Tumor
0.0
1022
Normal
0.0
185
Tumor
0.0
328
Normal
0.0
383
Tumor
0.0
217
Tumor
0.0
816
Normal
0.0
858
Normal
0.0
823
Tumor
0.0
567
Tumor
0.0
123
Tumor
0.0
455
Tumor
0.0
213
Tumor
0.0
628
Normal
0.0
262
Normal
0.0
451
Tumor
0.0
212
Normal
0.0
361
Tumor
0.0
284
Normal
0.0
366
Normal
0.0
286
Normal
0.0
465
Tumor
0.0
392
Normal
0.0
524
Normal
0.0
463
Tumor
0.0
627
Tumor
0.0
618
Normal
0.0
353
Tumor
0.0
127
Tumor
0.0
697
Tumor
0.0
472
Normal
0.0
196
Normal
0.0
538
Normal
0.0
937
Tumor
0.0
224
Normal
0.0
412
Normal
0.0
696
Normal
0.0
135
Tumor
0.0
277
Tumor
0.0
393
Tumor
0.0
261
Tumor
0.0
218
Normal
0.0
352
Normal
0.0
357
Tumor
0.0
258
Normal
0.0
147
Tumor
0.0
331
Tumor
0.0
354
Normal
0.0
642
Normal
0.0
564
Normal
0.0
746
Normal
0.0
636
Normal
0.0
113
Tumor
0.0
516
Normal
0.0
714
Normal
0.0
214
Normal
0.0
553
Tumor
0.0
376
Normal
0.0
474
Normal
0.0
221
Tumor
0.0
423
Tumor
-0.1
574
Normal
-0.1
785
Tumor
-0.1
715
Tumor
-0.1
356
Normal
-0.1
557
Tumor
-0.1
137
Tumor
-0.1
568
Normal
-0.1
272
Normal
-0.1
427
Tumor
-0.1
1028
Normal
-0.1
343
Tumor
-0.1
777
Tumor
-0.1
664
Normal
-0.1
271
Tumor
-0.1
671
Tumor
-0.1
914
Normal
-0.1
1016
Normal
-0.1
518
Normal
-0.1
814
Normal
-0.1
452
Normal
-0.1
722
Normal
-0.1
384
Normal
-0.1
421
Tumor
-0.1
686
Normal
-0.1
662
Normal
-0.1
195
Tumor
-0.1
957
Tumor
-0.1
342
Normal
-0.1
817
Tumor
-0.1
554
Normal
-0.1
956
Normal
-0.1
665
Tumor
-0.1
514
Normal
-0.1
311
Tumor
-0.1
297
Tumor
-0.1
815
Tumor
-0.1
641
Tumor
-0.1
363
Tumor
-0.1
648
Normal
-0.1
298
Normal
-0.1
1043
Tumor
-0.2
786
Normal
-0.2
267
Tumor
-0.2
344
Normal
-0.2
138
Normal
-0.2
666
Normal
-0.2
851
Tumor
-0.2
526
Normal
-0.2
813
Tumor
-0.2
191
Tumor
-0.2
145
Tumor
-0.2
332
Normal
-0.2
523
Tumor
-0.2
128
Normal
-0.2
755
Tumor
-0.2
132
Normal
-0.2
362
Normal
-0.2
186
Normal
-0.2
778
Normal
-0.2
358
Normal
-0.2
126
Normal
-0.2
136
Normal
-0.2
312
Normal
-0.2
533
Tumor
-0.3
188
Normal
-0.3
162
Normal
-0.3
314
Normal
-0.3
537
Tumor
-0.3
545
Tumor
-0.3
172
Normal
-0.3
148
Normal
-0.3
713
Tumor
-0.3
278
Normal
-0.3
114
Normal
-0.3
111
Normal
-0.4
124
Normal
-0.4
187
Tumor
-0.4
1025
Tumor
-0.5
375
Tumor
-0.5
745
Tumor
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
