We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DPH5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
66.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
46.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
44.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
39.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
38.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
38.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
37.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
35.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
35.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
34.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
34.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
33.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
32.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
31.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
31.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
30.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
30.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
30.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
30.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
29.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
29.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
29.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
28.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
27.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
27.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
26.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
26.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
24.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
23.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
23.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
23.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
23.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
23.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
22.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
22.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
20.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
19.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
18.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
15.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DPH5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.9
Number of samples
231
Samples
Sample
Description
TPM
DO45221
0 years, female, NA, stage:4, dead, 390 days
24.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
517
Tumor
1.0
957
Tumor
1.0
391
Tumor
0.9
443
Tumor
0.9
967
Tumor
0.9
571
Tumor
0.9
965
Tumor
0.8
413
Tumor
0.7
123
Tumor
0.7
663
Tumor
0.6
393
Tumor
0.6
191
Tumor
0.6
387
Tumor
0.6
147
Tumor
0.6
113
Tumor
0.6
727
Tumor
0.6
513
Tumor
0.6
535
Tumor
0.5
868
Normal
0.5
411
Tumor
0.5
187
Tumor
0.5
745
Tumor
0.5
1021
Tumor
0.5
367
Tumor
0.5
617
Tumor
0.5
432
Normal
0.4
1027
Tumor
0.4
428
Normal
0.4
341
Tumor
0.4
231
Tumor
0.4
436
Normal
0.4
446
Normal
0.4
477
Tumor
0.4
257
Tumor
0.4
925
Tumor
0.4
145
Tumor
0.4
545
Tumor
0.3
537
Tumor
0.3
724
Normal
0.3
1045
Tumor
0.3
741
Tumor
0.3
573
Tumor
0.3
695
Tumor
0.3
314
Normal
0.3
465
Tumor
0.3
665
Tumor
0.3
533
Tumor
0.3
353
Tumor
0.3
723
Tumor
0.2
777
Tumor
0.2
223
Tumor
0.2
267
Tumor
0.2
414
Normal
0.2
424
Normal
0.2
422
Normal
0.2
635
Tumor
0.2
258
Normal
0.2
426
Normal
0.2
186
Normal
0.2
527
Tumor
0.2
423
Tumor
0.2
862
Normal
0.2
351
Tumor
0.2
332
Normal
0.2
515
Tumor
0.2
427
Tumor
0.2
278
Normal
0.2
738
Normal
0.2
313
Tumor
0.1
433
Tumor
0.1
298
Normal
0.1
162
Normal
0.1
482
Normal
0.1
232
Normal
0.1
361
Tumor
0.1
172
Normal
0.1
627
Tumor
0.1
1015
Tumor
0.1
615
Tumor
0.1
514
Normal
0.1
272
Normal
0.1
525
Tumor
0.1
648
Normal
0.1
451
Tumor
0.1
528
Normal
0.1
467
Tumor
0.1
286
Normal
0.1
137
Tumor
0.1
148
Normal
0.1
425
Tumor
0.1
666
Normal
0.1
222
Normal
0.1
742
Normal
0.1
132
Normal
0.1
728
Normal
0.1
546
Normal
0.1
943
Tumor
0.1
421
Tumor
0.1
483
Tumor
0.1
195
Tumor
0.1
196
Normal
0.1
518
Normal
0.1
468
Normal
0.1
866
Normal
0.1
958
Normal
0.0
456
Normal
0.0
262
Normal
0.0
472
Normal
0.0
362
Normal
0.0
464
Normal
0.0
567
Tumor
0.0
664
Normal
0.0
534
Normal
0.0
628
Normal
0.0
358
Normal
0.0
356
Normal
0.0
938
Normal
0.0
937
Tumor
0.0
944
Normal
0.0
714
Normal
0.0
526
Normal
0.0
824
Normal
0.0
283
Tumor
0.0
466
Normal
0.0
146
Normal
0.0
136
Normal
0.0
131
Tumor
0.0
523
Tumor
0.0
864
Normal
0.0
462
Normal
0.0
127
Tumor
0.0
481
Tumor
0.0
953
Tumor
0.0
1044
Normal
0.0
1046
Normal
0.0
376
Normal
0.0
698
Normal
0.0
312
Normal
0.0
568
Normal
0.0
171
Tumor
0.0
138
Normal
0.0
981
Tumor
0.0
926
Normal
0.0
416
Normal
0.0
297
Tumor
0.0
435
Tumor
0.0
865
Tumor
0.0
212
Normal
0.0
713
Tumor
0.0
185
Tumor
0.0
452
Normal
-0.1
188
Normal
-0.1
697
Tumor
-0.1
261
Tumor
-0.1
228
Normal
-0.1
388
Normal
-0.1
564
Normal
-0.1
463
Tumor
-0.1
647
Tumor
-0.1
434
Normal
-0.1
448
Normal
-0.1
755
Tumor
-0.1
342
Normal
-0.1
386
Normal
-0.1
395
Tumor
-0.1
955
Tumor
-0.1
128
Normal
-0.1
365
Tumor
-0.1
858
Normal
-0.1
662
Normal
-0.1
915
Tumor
-0.1
354
Normal
-0.1
493
Tumor
-0.1
873
Tumor
-0.1
474
Normal
-0.1
357
Tumor
-0.1
366
Normal
-0.1
218
Normal
-0.1
563
Tumor
-0.1
396
Normal
-0.1
364
Normal
-0.1
616
Normal
-0.1
816
Normal
-0.1
114
Normal
-0.1
756
Normal
-0.1
818
Normal
-0.1
444
Normal
-0.1
487
Tumor
-0.1
394
Normal
-0.1
618
Normal
-0.1
141
Tumor
-0.1
352
Normal
-0.1
914
Normal
-0.1
685
Tumor
-0.1
956
Normal
-0.1
722
Normal
-0.1
268
Normal
-0.1
572
Normal
-0.1
161
Tumor
-0.1
227
Tumor
-0.1
913
Tumor
-0.1
412
Normal
-0.1
737
Tumor
-0.1
461
Tumor
-0.1
951
Tumor
-0.1
445
Tumor
-0.2
642
Normal
-0.2
715
Tumor
-0.2
497
Tumor
-0.2
786
Normal
-0.2
968
Normal
-0.2
911
Tumor
-0.2
1013
Tumor
-0.2
964
Normal
-0.2
882
Normal
-0.2
1041
Tumor
-0.2
392
Normal
-0.2
488
Normal
-0.2
524
Normal
-0.2
484
Normal
-0.2
368
Normal
-0.2
558
Normal
-0.2
746
Normal
-0.2
696
Normal
-0.2
966
Normal
-0.2
355
Tumor
-0.2
952
Normal
-0.2
884
Normal
-0.2
778
Normal
-0.2
716
Normal
-0.2
982
Normal
-0.2
574
Normal
-0.2
918
Normal
-0.2
214
Normal
-0.2
1016
Normal
-0.2
1026
Normal
-0.2
554
Normal
-0.2
331
Tumor
-0.2
912
Normal
-0.2
473
Tumor
-0.2
142
Normal
-0.3
494
Normal
-0.3
516
Normal
-0.3
277
Tumor
-0.3
284
Normal
-0.3
112
Tumor
-0.3
874
Normal
-0.3
924
Normal
-0.3
744
Normal
-0.3
557
Tumor
-0.3
327
Tumor
-0.3
922
Normal
-0.3
344
Normal
-0.3
383
Tumor
-0.3
976
Normal
-0.3
743
Tumor
-0.3
954
Normal
-0.3
126
Normal
-0.3
978
Normal
-0.3
111
Normal
-0.3
686
Normal
-0.3
415
Tumor
-0.3
861
Tumor
-0.3
384
Normal
-0.3
923
Tumor
-0.4
721
Tumor
-0.4
328
Normal
-0.4
984
Normal
-0.4
661
Tumor
-0.4
217
Tumor
-0.4
916
Normal
-0.4
857
Tumor
-0.4
311
Tumor
-0.4
125
Tumor
-0.4
1022
Normal
-0.4
672
Normal
-0.4
536
Normal
-0.4
852
Normal
-0.4
636
Normal
-0.4
491
Tumor
-0.4
878
Normal
-0.4
671
Tumor
-0.4
213
Tumor
-0.4
1042
Normal
-0.4
538
Normal
-0.4
814
Normal
-0.4
863
Tumor
-0.4
363
Tumor
-0.4
343
Tumor
-0.4
867
Tumor
-0.4
124
Normal
-0.5
224
Normal
-0.5
431
Tumor
-0.5
1014
Normal
-0.5
815
Tumor
-0.5
192
Normal
-0.5
221
Tumor
-0.5
785
Tumor
-0.5
498
Normal
-0.5
983
Tumor
-0.5
478
Normal
-0.5
1032
Normal
-0.5
817
Tumor
-0.5
851
Tumor
-0.5
1043
Tumor
-0.6
975
Tumor
-0.6
447
Tumor
-0.6
1028
Normal
-0.6
877
Tumor
-0.6
977
Tumor
-0.6
883
Tumor
-0.6
455
Tumor
-0.6
271
Tumor
-0.6
285
Tumor
-0.6
135
Tumor
-0.6
813
Tumor
-0.7
492
Normal
-0.7
375
Tumor
-0.7
1025
Tumor
-0.7
553
Tumor
-0.7
211
Tumor
-0.7
641
Tumor
-0.7
963
Tumor
-0.8
917
Tumor
-0.8
823
Tumor
-0.8
881
Tumor
-0.9
921
Tumor
-0.9
1031
Tumor
-1.0
385
Tumor
-1.0
471
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
