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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NID1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
228.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
171.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
170.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
159.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
121.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
120.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
120.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
114.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
112.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
104.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
103.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
100.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
98.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
95.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
94.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
90.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
89.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
87.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
85.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
82.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
80.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
80.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
78.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
78.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
76.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
75.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
73.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
71.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
70.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
69.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
69.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
68.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
66.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
64.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
64.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
63.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
63.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
62.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
60.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
60.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
59.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
58.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
57.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
57.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
56.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
55.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
54.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
54.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
53.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
53.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
52.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
51.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
51.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
51.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
50.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
48.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
48.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
48.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
48.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
48.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
47.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
47.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
46.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
46.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
46.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
45.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
45.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
44.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
43.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
43.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
43.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
43.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
43.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
43.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
42.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
42.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
42.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
42.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
41.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
40.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
40.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
40.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
40.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
39.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
39.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
38.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
38.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
38.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
38.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
38.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
37.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
37.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
36.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
36.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
36.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
36.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
36.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
36.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
36.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
36.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
36.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
35.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
35.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
34.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
34.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
34.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
34.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
34.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
33.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
32.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
32.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
32.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
32.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
32.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
31.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
31.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
31.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
30.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
30.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
30.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
30.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
30.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
30.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
29.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
29.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
29.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
28.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
28.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
27.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
27.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
27.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
27.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
27.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
27.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
27.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
25.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
25.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
25.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
24.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
24.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
24.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
21.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
21.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
21.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
21.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
17.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NID1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.7
Number of samples
231
Samples
Sample
Description
TPM
DO23524
0 years, female, NA, stage:2, alive, 1050 days
149.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
132.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
126.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
112.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
110.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
107.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
106.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
94.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
92.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
81.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
81.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
79.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
76.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
74.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
72.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
70.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
69.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
65.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
63.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
61.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
59.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
59.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
58.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
58.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
56.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
55.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
55.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
55.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
54.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
54.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
53.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
52.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
52.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
51.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
50.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
50.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
48.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
48.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
48.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
47.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
47.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
46.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
46.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
46.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
44.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
43.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
43.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
43.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
43.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
42.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
42.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
42.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
42.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
41.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
41.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
40.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
40.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
40.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
39.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
39.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
39.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
39.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
39.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
38.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
38.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
37.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
37.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
37.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
36.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
36.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
36.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
36.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
35.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
35.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
35.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
34.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
34.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
34.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
34.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
33.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
33.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
33.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
32.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
32.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
32.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
31.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
31.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
31.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
30.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
30.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
30.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
30.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
29.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
29.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
29.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
29.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
28.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
28.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
28.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
28.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
28.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
28.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
27.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
26.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
25.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
24.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
24.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
24.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
23.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
22.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
22.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
17.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.6
715
Tumor
1.4
171
Tumor
1.2
343
Tumor
1.2
671
Tumor
1.1
647
Tumor
1.1
363
Tumor
1.0
425
Tumor
1.0
877
Tumor
0.9
915
Tumor
0.9
545
Tumor
0.9
823
Tumor
0.8
367
Tumor
0.8
483
Tumor
0.8
685
Tumor
0.7
161
Tumor
0.7
331
Tumor
0.7
977
Tumor
0.7
421
Tumor
0.7
981
Tumor
0.7
911
Tumor
0.7
185
Tumor
0.6
473
Tumor
0.6
227
Tumor
0.6
192
Normal
0.6
131
Tumor
0.6
465
Tumor
0.6
355
Tumor
0.6
455
Tumor
0.6
141
Tumor
0.5
471
Tumor
0.5
883
Tumor
0.5
277
Tumor
0.5
627
Tumor
0.5
435
Tumor
0.5
261
Tumor
0.5
461
Tumor
0.5
357
Tumor
0.5
147
Tumor
0.4
665
Tumor
0.4
517
Tumor
0.4
713
Tumor
0.4
451
Tumor
0.4
361
Tumor
0.4
1013
Tumor
0.4
533
Tumor
0.4
187
Tumor
0.4
777
Tumor
0.4
393
Tumor
0.4
635
Tumor
0.4
297
Tumor
0.4
463
Tumor
0.4
283
Tumor
0.4
411
Tumor
0.3
525
Tumor
0.3
383
Tumor
0.3
921
Tumor
0.3
327
Tumor
0.3
881
Tumor
0.3
137
Tumor
0.3
257
Tumor
0.3
563
Tumor
0.3
695
Tumor
0.3
817
Tumor
0.3
385
Tumor
0.3
195
Tumor
0.3
223
Tumor
0.3
965
Tumor
0.3
1025
Tumor
0.3
213
Tumor
0.2
813
Tumor
0.2
1015
Tumor
0.2
427
Tumor
0.2
1045
Tumor
0.2
231
Tumor
0.2
727
Tumor
0.2
146
Normal
0.2
697
Tumor
0.2
492
Normal
0.2
615
Tumor
0.2
391
Tumor
0.2
923
Tumor
0.2
515
Tumor
0.2
353
Tumor
0.2
423
Tumor
0.2
963
Tumor
0.2
874
Normal
0.2
125
Tumor
0.2
444
Normal
0.2
523
Tumor
0.2
741
Tumor
0.2
957
Tumor
0.1
311
Tumor
0.1
513
Tumor
0.1
447
Tumor
0.1
413
Tumor
0.1
975
Tumor
0.1
491
Tumor
0.1
538
Normal
0.1
433
Tumor
0.1
943
Tumor
0.1
498
Normal
0.1
863
Tumor
0.1
745
Tumor
0.1
857
Tumor
0.1
672
Normal
0.1
1041
Tumor
0.1
493
Tumor
0.1
188
Normal
0.1
814
Normal
0.1
913
Tumor
0.1
384
Normal
0.1
375
Tumor
0.1
354
Normal
0.1
285
Tumor
0.1
967
Tumor
0.1
1043
Tumor
0.1
268
Normal
0.1
641
Tumor
0.0
145
Tumor
0.0
351
Tumor
0.0
478
Normal
0.0
365
Tumor
0.0
744
Normal
0.0
571
Tumor
0.0
1031
Tumor
0.0
135
Tumor
0.0
937
Tumor
0.0
431
Tumor
0.0
527
Tumor
0.0
312
Normal
0.0
557
Tumor
0.0
313
Tumor
0.0
916
Normal
0.0
387
Tumor
0.0
191
Tumor
0.0
477
Tumor
0.0
958
Normal
0.0
112
Tumor
0.0
861
Tumor
0.0
925
Tumor
0.0
395
Tumor
-0.1
127
Tumor
-0.1
755
Tumor
-0.1
362
Normal
-0.1
126
Normal
-0.1
567
Tumor
-0.1
386
Normal
-0.1
867
Tumor
-0.1
535
Tumor
-0.1
917
Tumor
-0.1
368
Normal
-0.1
982
Normal
-0.1
536
Normal
-0.1
953
Tumor
-0.1
472
Normal
-0.1
574
Normal
-0.1
884
Normal
-0.1
524
Normal
-0.1
572
Normal
-0.1
553
Tumor
-0.1
364
Normal
-0.1
785
Tumor
-0.1
224
Normal
-0.1
284
Normal
-0.1
443
Tumor
-0.1
537
Tumor
-0.1
278
Normal
-0.1
464
Normal
-0.1
868
Normal
-0.2
352
Normal
-0.2
394
Normal
-0.2
113
Tumor
-0.2
221
Tumor
-0.2
516
Normal
-0.2
228
Normal
-0.2
466
Normal
-0.2
467
Tumor
-0.2
445
Tumor
-0.2
392
Normal
-0.2
212
Normal
-0.2
414
Normal
-0.2
984
Normal
-0.2
424
Normal
-0.2
976
Normal
-0.2
162
Normal
-0.2
983
Tumor
-0.2
742
Normal
-0.2
487
Tumor
-0.2
1044
Normal
-0.2
148
Normal
-0.2
186
Normal
-0.2
573
Tumor
-0.2
462
Normal
-0.2
497
Tumor
-0.2
172
Normal
-0.2
422
Normal
-0.2
882
Normal
-0.2
426
Normal
-0.3
1032
Normal
-0.3
332
Normal
-0.3
218
Normal
-0.3
816
Normal
-0.3
344
Normal
-0.3
388
Normal
-0.3
474
Normal
-0.3
954
Normal
-0.3
448
Normal
-0.3
924
Normal
-0.3
396
Normal
-0.3
376
Normal
-0.3
341
Tumor
-0.3
412
Normal
-0.3
666
Normal
-0.3
918
Normal
-0.3
1046
Normal
-0.3
526
Normal
-0.3
314
Normal
-0.3
416
Normal
-0.3
558
Normal
-0.3
214
Normal
-0.3
366
Normal
-0.3
428
Normal
-0.3
456
Normal
-0.3
618
Normal
-0.3
864
Normal
-0.3
951
Tumor
-0.3
851
Tumor
-0.3
912
Normal
-0.3
1027
Tumor
-0.3
484
Normal
-0.3
978
Normal
-0.3
664
Normal
-0.3
662
Normal
-0.3
262
Normal
-0.3
716
Normal
-0.3
136
Normal
-0.3
914
Normal
-0.3
926
Normal
-0.3
415
Tumor
-0.4
446
Normal
-0.4
342
Normal
-0.4
786
Normal
-0.4
132
Normal
-0.4
434
Normal
-0.4
617
Tumor
-0.4
546
Normal
-0.4
123
Tumor
-0.4
482
Normal
-0.4
514
Normal
-0.4
1016
Normal
-0.4
124
Normal
-0.4
737
Tumor
-0.4
534
Normal
-0.4
878
Normal
-0.4
211
Tumor
-0.4
138
Normal
-0.4
642
Normal
-0.4
852
Normal
-0.4
686
Normal
-0.4
648
Normal
-0.4
628
Normal
-0.4
873
Tumor
-0.4
554
Normal
-0.4
922
Normal
-0.4
968
Normal
-0.4
818
Normal
-0.4
258
Normal
-0.4
222
Normal
-0.4
862
Normal
-0.4
1014
Normal
-0.4
267
Tumor
-0.4
142
Normal
-0.4
815
Tumor
-0.4
944
Normal
-0.4
528
Normal
-0.4
756
Normal
-0.4
468
Normal
-0.4
722
Normal
-0.4
564
Normal
-0.4
866
Normal
-0.4
728
Normal
-0.4
956
Normal
-0.5
938
Normal
-0.5
636
Normal
-0.5
964
Normal
-0.5
298
Normal
-0.5
494
Normal
-0.5
568
Normal
-0.5
272
Normal
-0.5
858
Normal
-0.5
356
Normal
-0.5
286
Normal
-0.5
518
Normal
-0.5
358
Normal
-0.5
217
Tumor
-0.5
1028
Normal
-0.5
1022
Normal
-0.5
432
Normal
-0.5
452
Normal
-0.5
1042
Normal
-0.5
738
Normal
-0.5
696
Normal
-0.5
232
Normal
-0.5
824
Normal
-0.5
271
Tumor
-0.5
1021
Tumor
-0.5
714
Normal
-0.5
436
Normal
-0.5
111
Normal
-0.6
698
Normal
-0.6
196
Normal
-0.6
723
Tumor
-0.6
328
Normal
-0.6
488
Normal
-0.6
481
Tumor
-0.6
724
Normal
-0.6
778
Normal
-0.6
663
Tumor
-0.6
721
Tumor
-0.6
952
Normal
-0.6
746
Normal
-0.7
114
Normal
-0.7
616
Normal
-0.7
661
Tumor
-0.7
966
Normal
-0.7
128
Normal
-0.7
1026
Normal
-0.7
865
Tumor
-0.8
955
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
