MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.1 nTPM
HPA Brain:23.2 nTPM
GTEx:16.1 nTPM
FANTOM5:16.0 Scaled Tags Per Million
Pig:35.7 nTPM
Mouse:65.3 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 23.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.5
2411 Female, age 72, unknown 20.8
2586 Male, age 75, left hemisphere 19.8
1870 Female, age 42, unknown 19.1
2019 Male, age 18, unknown 19.0
2666 Male, age 74, left hemisphere 17.4
1827 Male, age 72, unknown 17.1
1833 Male, age 53, unknown 16.9
1830 Male, age 51, unknown 15.9
2828 Female, age 72, unknown 15.1
2219 Male, age 76, both hemispheres 13.7
Dorsal raphe nucleus
nTPM: 19.0
2047 Male, age 72, unknown 20.3
2750 Male, age 76, both hemispheres 19.9
1828 Male, age 53, unknown 18.9
2298 Female, age 72, unknown 18.9
2016 Female, age 72, unknown 17.2
Inferior colliculus
nTPM: 15.1
2097 Female, age 72, unknown 17.2
1848 Female, age 42, unknown 15.8
1890 Male, age 53, unknown 14.9
2849 Male, age 72, unknown 12.5
Median raphe nucleus
nTPM: 23.2
2220 Male, age 76, midline 23.2
Periaquaductal grey, anterior
nTPM: 15.8
1947 Male, age 18, unknown 16.6
1795 Male, age 51, unknown 15.7
2502 Female, age 75, unknown 15.2
Periaquaductal grey, dorsal
nTPM: 16.1
2850 Male, age 76, both hemispheres 17.5
1840 Male, age 53, unknown 16.6
1831 Male, age 72, unknown 15.2
2464 Female, age 72, unknown 15.1
Periaquaductal grey, lateral
nTPM: 14.2
2053 Male, age 18, unknown 15.5
2140 Male, age 76, both hemispheres 14.5
2272 Male, age 74, both hemispheres 12.7
Pretectal area
nTPM: 16.4
2007 Male, age 72, unknown 18.7
1817 Female, age 42, unknown 18.6
2667 Female, age 75, unknown 17.2
1816 Male, age 51, unknown 16.5
1815 Male, age 53, unknown 16.4
1944 Female, age 72, unknown 16.3
2224 Female, age 72, unknown 16.3
2273 Male, age 74, both hemispheres 16.1
2316 Male, age 76, right hemisphere 15.5
2825 Male, age 18, unknown 14.8
2407 Male, age 75, both hemispheres 14.5
Red nucleus
nTPM: 17.9
1821 Female, age 72, unknown 24.5
1954 Female, age 42, unknown 19.7
1865 Male, age 51, unknown 19.4
1904 Male, age 53, unknown 18.5
2503 Female, age 72, unknown 17.7
2725 Female, age 75, unknown 17.5
2769 Male, age 72, unknown 17.2
2227 Male, age 72, unknown 17.0
2785 Male, age 18, unknown 16.2
2588 Male, age 74, left hemisphere 16.1
2823 Male, age 76, right hemisphere 15.9
2584 Male, age 75, left hemisphere 15.4
Substantia nigra
nTPM: 21.2
1916 Female, age 42, unknown 26.2
2241 Male, age 72, unknown 26.2
1851 Male, age 51, unknown 22.7
1941 Male, age 53, unknown 21.9
2409 Female, age 72, unknown 21.9
2699 Male, age 18, unknown 20.3
1889 Female, age 72, unknown 19.7
2583 Male, age 75, right hemisphere 18.9
2590 Female, age 75, unknown 18.1
2665 Male, age 74, both hemispheres 16.4
Superior colliculus
nTPM: 15.7
2668 Female, age 75, unknown 18.5
2587 Male, age 74, left hemisphere 17.2
1796 Male, age 53, unknown 15.9
1839 Male, age 51, unknown 15.7
2261 Male, age 18, unknown 15.7
1895 Male, age 76, right hemisphere 15.6
1913 Female, age 42, unknown 15.3
2664 Male, age 75, both hemispheres 14.7
2087 Female, age 72, unknown 14.4
1995 Male, age 72, unknown 14.3
Ventral tegmental area
nTPM: 19.5
2410 Female, age 72, unknown 23.7
1915 Female, age 42, unknown 21.9
2223 Female, age 72, unknown 18.0
1942 Male, age 51, unknown 17.9
2218 Male, age 76, both hemispheres 17.8
2021 Male, age 53, unknown 17.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.1
Samples: 139

Max nTPM: 27.2
Min nTPM: 10.8
Std nTPM: 2.7
Median nTPM: 15.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 27.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 24.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 23.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 23.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 23.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 22.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 22.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 21.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 21.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 21.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 20.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.0
FF:10158-103A5 76 years, female 16.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 35.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.7
Samples: 4

Max nTPM: 45.0
Min nTPM: 29.5
Sample A Female 45.0
Sample B Female 29.8
Sample C Male 38.6
Sample D Male 29.5
Midbrain
nTPM: 34.4
Samples: 4

Max nTPM: 42.4
Min nTPM: 28.3
Sample A Female 42.4
Sample B Female 32.6
Sample C Male 34.2
Sample D Male 28.3
Periaqueductal gray
nTPM: 28.0
Samples: 3

Max nTPM: 30.8
Min nTPM: 25.3
Sample B Female 27.8
Sample C Male 30.8
Sample D Male 25.3
Superior colliculi
nTPM: 32.0
Samples: 4

Max nTPM: 36.0
Min nTPM: 28.9
Sample A Female 36.0
Sample B Female 28.9
Sample C Male 34.0
Sample D Male 29.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 65.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 65.4
Samples: 4

Max nTPM: 66.7
Min nTPM: 63.8
Sample A Male 65.9
Sample B Male 66.7
Sample C Female 63.8
Sample D Female 65.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
79534965 Antisense, RP_071018_01_A05, Mouse strain C57BL/6J (56 days, male) 1.9

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