HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:12.9 nTPM
HPA Brain:14.7 nTPM
GTEx:12.9 nTPM
FANTOM5:12.2 Scaled Tags Per Million
Pig:30.6 nTPM
Mouse:54.1 nTPM
Allen mouse:2.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018247
Glial cells High
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 14.7
Sample id Sample description nTPM
Hippocampus
nTPM: 14.1
1898 Male, age 80, left hemisphere 17.8
2529 Female, age 94, left hemisphere 15.6
1855 Male, age 76, left hemisphere 13.3
2148 Female, age 91, left hemisphere 13.0
1911 Female, age 85, right hemisphere 12.5
2621 Female, age 67, right hemisphere 12.2
Dentate gyrus
nTPM: 12.8
2010 Male, age 76, both hemispheres 15.8
1927 Female, age 91, both hemispheres 14.8
2528 Male, age 74, both hemispheres 13.8
2530 Female, age 94, left hemisphere 13.1
2246 Female, age 85, both hemispheres 10.9
2531 Female, age 67, both hemispheres 8.7
Entorhinal gyrus
nTPM: 13.7
2117 Female, age 91, right hemisphere 17.2
1938 Female, age 85, left hemisphere 16.1
1787 Male, age 76, left hemisphere 14.2
2764 Male, age 80, right hemisphere 13.0
2686 Male, age 75, right hemisphere 11.5
2613 Female, age 94, left hemisphere 10.4
Hippocampus, CA1
nTPM: 14.4
2749 Male, age 80, left hemisphere 17.0
2045 Male, age 76, both hemispheres 14.8
2527 Male, age 74, both hemispheres 14.6
1873 Female, age 85, both hemispheres 14.0
2082 Female, age 91, right hemisphere 11.8
Hippocampus, CA2
nTPM: 13.7
2249 Male, age 74, both hemispheres 14.8
1963 Male, age 80, left hemisphere 14.7
1892 Male, age 76, both hemispheres 13.8
2437 Female, age 94, left hemisphere 13.3
1940 Female, age 85, left hemisphere 12.8
2113 Female, age 91, right hemisphere 12.8
Hippocampus, CA3
nTPM: 14.1
1867 Male, age 76, both hemispheres 18.0
2137 Male, age 80, left hemisphere 16.5
1891 Female, age 85, both hemispheres 15.4
2436 Male, age 74, both hemispheres 13.8
2620 Female, age 94, left hemisphere 11.1
2861 Female, age 67, both hemispheres 10.1
Parahippocampal cortex
nTPM: 13.3
1850 Male, age 80, both hemispheres 18.0
2018 Male, age 76, both hemispheres 17.2
1990 Female, age 91, right hemisphere 14.0
1933 Female, age 85, both hemispheres 13.8
2692 Male, age 74, both hemispheres 12.9
2693 Female, age 94, both hemispheres 12.7
2250 Female, age 67, right hemisphere 12.5
2245 Female, age 91, both hemispheres 11.9
2532 Female, age 72, left hemisphere 11.3
2622 Female, age 67, right hemisphere 9.0
Perirhinal gyrus
nTPM: 14.7
1847 Female, age 91, left hemisphere 16.7
1794 Male, age 80, right hemisphere 15.8
2521 Female, age 94, right hemisphere 14.6
1841 Female, age 85, right hemisphere 14.4
2848 Male, age 76, right hemisphere 12.1
Subiculum
nTPM: 13.9
1901 Male, age 80, both hemispheres 17.1
2042 Male, age 76, both hemispheres 16.0
1977 Female, age 85, both hemispheres 14.7
2729 Female, age 91, right hemisphere 13.4
2619 Male, age 74, both hemispheres 12.5
2438 Female, age 94, left hemisphere 9.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 12.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.9
Samples: 197

Max nTPM: 27.8
Min nTPM: 8.2
Std nTPM: 2.3
Median nTPM: 12.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 27.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 23.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 20.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 18.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 18.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 17.8
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 17.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 17.1
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 16.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 16.5
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 16.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 12.2
FF:10153-102I9 76 years, female 15.1
FF:10169-103B7 60 years, female 9.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 30.6
Pig sample Sample description nTPM
Subiculum
nTPM: 27.3
Samples: 4

Max nTPM: 33.0
Min nTPM: 25.3
Sample A Female 33.0
Sample B Female 25.3
Sample C Male 25.4
Sample D Male 25.3
Dorsal hippocampus
nTPM: 30.6
Samples: 4

Max nTPM: 36.0
Min nTPM: 24.2
Sample A Female 36.0
Sample B Female 31.3
Sample C Male 30.8
Sample D Male 24.2
Entorhinal cortex
nTPM: 25.0
Samples: 4

Max nTPM: 27.3
Min nTPM: 21.5
Sample A Female 25.6
Sample B Female 25.6
Sample C Male 27.3
Sample D Male 21.5
Ventral hippocampus
nTPM: 26.7
Samples: 4

Max nTPM: 30.5
Min nTPM: 22.5
Sample A Female 27.6
Sample B Female 22.5
Sample C Male 26.1
Sample D Male 30.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 54.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 53.9
Samples: 4

Max nTPM: 57.9
Min nTPM: 51.0
Sample A Male 53.6
Sample B Male 57.9
Sample C Female 51.0
Sample D Female 53.2
Hippocampal formation
nTPM: 54.2
Samples: 4

Max nTPM: 56.3
Min nTPM: 52.3
Sample A Male 56.3
Sample B Male 54.2
Sample C Female 53.8
Sample D Female 52.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 2.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.1
79534965 Antisense, RP_071018_01_A05, Mouse strain C57BL/6J (56 days, male) 2.1

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