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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CRYZ is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
92.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
431.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
428.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
378.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
352.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
339.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
298.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
285.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
281.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
275.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
270.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
266.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
258.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
255.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
230.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
229.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
223.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
222.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
220.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
220.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
218.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
216.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
214.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
211.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
209.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
206.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
205.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
204.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
201.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
197.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
196.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
195.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
194.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
190.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
185.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
185.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
178.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
178.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
177.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
176.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
170.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
168.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
165.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
164.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
163.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
161.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
161.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
160.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
160.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
154.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
152.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
151.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
148.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
147.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
145.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
144.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
141.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
140.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
138.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
138.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
137.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
134.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
133.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
133.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
133.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
132.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
132.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
131.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
130.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
130.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
130.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
128.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
128.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
127.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
125.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
125.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
124.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
123.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
121.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
119.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
118.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
117.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
117.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
116.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
114.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
114.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
114.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
113.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
112.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
112.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
111.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
111.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
111.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
110.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
110.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
108.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
108.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
108.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
108.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
107.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
107.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
107.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
107.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
107.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
107.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
105.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
105.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
104.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
104.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
104.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
104.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
103.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
103.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
103.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
103.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
102.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
101.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
101.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
101.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
100.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
100.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
100.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
100.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
100.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
100.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
100.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
99.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
99.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
98.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
97.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
96.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
96.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
96.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
96.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
95.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
95.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
95.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
95.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
95.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
94.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
94.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
94.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
94.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
94.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
93.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
93.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
93.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
93.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
93.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
92.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
91.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
91.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
91.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
90.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
89.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
88.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
87.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
87.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
87.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
87.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
87.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
86.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
86.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
86.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
85.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
84.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
84.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
84.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
84.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
83.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
83.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
82.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
82.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
82.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
81.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
81.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
81.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
81.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
80.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
80.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
79.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
79.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
79.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
78.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
78.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
78.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
78.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
77.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
77.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
76.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
76.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
76.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
76.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
76.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
76.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
75.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
75.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
75.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
74.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
74.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
73.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
73.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
73.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
73.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
72.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
72.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
72.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
71.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
71.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
70.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
70.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
70.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
70.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
70.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
70.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
69.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
68.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
68.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
68.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
67.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
66.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
65.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
64.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
64.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
64.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
64.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
64.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
64.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
63.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
63.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
63.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
62.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
62.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
62.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
61.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
61.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
61.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
61.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
60.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
60.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
60.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
59.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
59.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
57.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
57.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
56.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
54.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
53.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
53.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
53.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
52.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
52.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
51.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
51.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
51.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
51.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
50.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
49.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
49.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
48.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
48.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
48.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
48.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
48.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
47.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
47.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
47.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
47.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
47.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
47.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
46.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
46.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
46.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
45.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
44.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
44.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
44.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
44.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
43.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
43.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
43.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
43.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
42.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
42.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
42.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
42.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
42.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
41.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
41.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
40.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
40.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
40.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
40.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
39.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
39.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
39.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
38.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
38.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
38.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
37.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
37.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
37.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
36.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
35.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
35.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
34.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
34.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
34.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
34.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
33.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
33.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
33.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
32.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
32.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
32.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
32.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
31.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
31.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
31.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
29.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
29.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
29.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
28.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
27.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
27.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
27.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
26.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
26.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
26.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
26.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
25.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
24.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
24.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
24.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
20.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
17.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CRYZ is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
87.6
Number of samples
231
Samples
Sample
Description
TPM
DO48719
0 years, male, NA, stage:2, alive, 690 days
367.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
326.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
285.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
264.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
257.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
255.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
235.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
235.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
221.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
204.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
201.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
198.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
198.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
190.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
188.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
178.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
174.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
173.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
173.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
172.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
168.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
165.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
155.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
153.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
150.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
147.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
144.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
142.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
141.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
141.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
137.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
135.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
133.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
131.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
130.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
128.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
128.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
126.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
125.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
124.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
123.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
122.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
120.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
118.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
117.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
117.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
116.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
115.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
114.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
114.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
111.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
109.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
109.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
109.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
108.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
108.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
107.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
106.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
105.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
105.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
102.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
102.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
102.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
102.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
101.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
101.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
100.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
100.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
100.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
98.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
97.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
96.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
95.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
94.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
93.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
92.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
91.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
90.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
90.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
90.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
88.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
88.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
87.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
87.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
87.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
86.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
85.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
84.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
84.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
84.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
83.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
83.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
83.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
82.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
82.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
82.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
82.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
81.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
81.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
81.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
80.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
80.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
80.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
80.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
79.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
78.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
78.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
78.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
78.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
77.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
77.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
77.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
77.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
77.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
76.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
76.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
75.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
74.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
74.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
74.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
73.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
73.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
72.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
72.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
72.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
71.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
71.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
71.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
71.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
71.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
70.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
70.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
70.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
69.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
69.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
68.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
67.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
67.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
66.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
66.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
66.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
65.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
65.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
64.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
64.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
64.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
63.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
62.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
62.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
62.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
62.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
62.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
62.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
61.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
61.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
60.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
60.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
59.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
59.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
59.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
58.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
56.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
54.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
54.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
54.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
54.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
54.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
54.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
53.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
53.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
53.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
52.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
51.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
50.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
50.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
50.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
49.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
49.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
49.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
49.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
48.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
48.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
48.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
47.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
47.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
46.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
46.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
46.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
46.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
45.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
45.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
45.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
45.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
44.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
43.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
43.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
42.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
41.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
41.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
41.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
41.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
40.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
39.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
38.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
37.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
37.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
37.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
36.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
35.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
35.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
35.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
34.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
33.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
32.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
31.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
30.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
29.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
28.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
25.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
24.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
911
Tumor
1.7
1041
Tumor
1.2
261
Tumor
0.8
451
Tumor
0.8
452
Normal
0.7
741
Tumor
0.7
742
Normal
0.7
214
Normal
0.7
981
Tumor
0.7
342
Normal
0.7
746
Normal
0.7
426
Normal
0.6
414
Normal
0.6
128
Normal
0.6
172
Normal
0.6
436
Normal
0.6
196
Normal
0.6
738
Normal
0.6
137
Tumor
0.6
864
Normal
0.6
513
Tumor
0.6
422
Normal
0.5
915
Tumor
0.5
755
Tumor
0.5
394
Normal
0.5
186
Normal
0.5
314
Normal
0.5
867
Tumor
0.5
222
Normal
0.5
258
Normal
0.5
468
Normal
0.5
723
Tumor
0.5
616
Normal
0.5
132
Normal
0.5
232
Normal
0.5
278
Normal
0.5
114
Normal
0.5
955
Tumor
0.4
615
Tumor
0.4
685
Tumor
0.4
376
Normal
0.4
298
Normal
0.4
662
Normal
0.4
648
Normal
0.4
868
Normal
0.4
816
Normal
0.4
1022
Normal
0.4
618
Normal
0.4
354
Normal
0.4
617
Tumor
0.4
332
Normal
0.4
824
Normal
0.4
388
Normal
0.4
162
Normal
0.4
272
Normal
0.4
462
Normal
0.4
728
Normal
0.4
358
Normal
0.4
786
Normal
0.4
428
Normal
0.4
361
Tumor
0.4
262
Normal
0.4
862
Normal
0.4
464
Normal
0.4
366
Normal
0.4
484
Normal
0.4
424
Normal
0.4
456
Normal
0.4
564
Normal
0.4
866
Normal
0.4
925
Tumor
0.4
698
Normal
0.4
432
Normal
0.4
362
Normal
0.4
858
Normal
0.4
446
Normal
0.4
861
Tumor
0.4
914
Normal
0.4
218
Normal
0.4
268
Normal
0.4
466
Normal
0.4
448
Normal
0.3
386
Normal
0.3
818
Normal
0.3
312
Normal
0.3
852
Normal
0.3
882
Normal
0.3
148
Normal
0.3
145
Tumor
0.3
938
Normal
0.3
111
Normal
0.3
136
Normal
0.3
568
Normal
0.3
968
Normal
0.3
666
Normal
0.3
1026
Normal
0.3
744
Normal
0.3
546
Normal
0.3
228
Normal
0.3
642
Normal
0.3
138
Normal
0.3
494
Normal
0.3
212
Normal
0.3
286
Normal
0.3
571
Tumor
0.3
878
Normal
0.3
1044
Normal
0.3
884
Normal
0.3
344
Normal
0.3
756
Normal
0.3
912
Normal
0.3
538
Normal
0.3
528
Normal
0.3
664
Normal
0.3
558
Normal
0.3
1032
Normal
0.3
284
Normal
0.3
778
Normal
0.3
636
Normal
0.3
627
Tumor
0.3
722
Normal
0.3
146
Normal
0.3
328
Normal
0.3
966
Normal
0.3
944
Normal
0.3
482
Normal
0.3
715
Tumor
0.3
572
Normal
0.3
488
Normal
0.3
874
Normal
0.2
714
Normal
0.2
126
Normal
0.2
393
Tumor
0.2
952
Normal
0.2
518
Normal
0.2
171
Tumor
0.2
514
Normal
0.2
716
Normal
0.2
534
Normal
0.2
392
Normal
0.2
327
Tumor
0.2
472
Normal
0.2
1042
Normal
0.2
956
Normal
0.2
127
Tumor
0.2
352
Normal
0.2
924
Normal
0.2
396
Normal
0.2
686
Normal
0.2
434
Normal
0.2
1028
Normal
0.2
958
Normal
0.2
1046
Normal
0.2
368
Normal
0.2
474
Normal
0.2
982
Normal
0.2
1016
Normal
0.2
954
Normal
0.2
696
Normal
0.2
976
Normal
0.2
412
Normal
0.2
142
Normal
0.2
188
Normal
0.2
964
Normal
0.2
124
Normal
0.2
465
Tumor
0.1
444
Normal
0.1
918
Normal
0.1
416
Normal
0.1
926
Normal
0.1
113
Tumor
0.1
384
Normal
0.1
413
Tumor
0.1
574
Normal
0.1
356
Normal
0.1
1014
Normal
0.1
191
Tumor
0.1
231
Tumor
0.1
364
Normal
0.1
341
Tumor
0.1
365
Tumor
0.1
916
Normal
0.1
516
Normal
0.1
526
Normal
0.1
257
Tumor
0.1
672
Normal
0.0
353
Tumor
0.0
984
Normal
0.0
978
Normal
0.0
478
Normal
0.0
187
Tumor
0.0
224
Normal
0.0
213
Tumor
0.0
223
Tumor
0.0
563
Tumor
0.0
721
Tumor
0.0
192
Normal
0.0
112
Tumor
0.0
423
Tumor
0.0
195
Tumor
0.0
863
Tumor
0.0
524
Normal
0.0
554
Normal
-0.1
628
Normal
-0.1
185
Tumor
-0.1
557
Tumor
-0.1
481
Tumor
-0.1
537
Tumor
-0.1
123
Tumor
-0.1
873
Tumor
-0.1
445
Tumor
-0.1
431
Tumor
-0.1
492
Normal
-0.1
745
Tumor
-0.2
135
Tumor
-0.2
387
Tumor
-0.2
515
Tumor
-0.2
461
Tumor
-0.2
297
Tumor
-0.2
635
Tumor
-0.2
1015
Tumor
-0.2
421
Tumor
-0.2
777
Tumor
-0.2
267
Tumor
-0.2
1025
Tumor
-0.2
695
Tumor
-0.2
435
Tumor
-0.2
498
Normal
-0.2
425
Tumor
-0.2
857
Tumor
-0.3
383
Tumor
-0.3
217
Tumor
-0.3
161
Tumor
-0.3
883
Tumor
-0.3
527
Tumor
-0.3
536
Normal
-0.3
443
Tumor
-0.3
1043
Tumor
-0.3
1045
Tumor
-0.3
483
Tumor
-0.3
737
Tumor
-0.4
713
Tumor
-0.4
785
Tumor
-0.4
815
Tumor
-0.4
922
Normal
-0.4
141
Tumor
-0.4
391
Tumor
-0.4
477
Tumor
-0.4
567
Tumor
-0.4
395
Tumor
-0.4
487
Tumor
-0.4
447
Tumor
-0.4
131
Tumor
-0.5
665
Tumor
-0.5
1027
Tumor
-0.5
427
Tumor
-0.5
433
Tumor
-0.5
313
Tumor
-0.5
814
Normal
-0.6
913
Tumor
-0.6
415
Tumor
-0.6
467
Tumor
-0.6
851
Tumor
-0.6
411
Tumor
-0.6
967
Tumor
-0.6
535
Tumor
-0.6
977
Tumor
-0.6
823
Tumor
-0.6
533
Tumor
-0.6
1021
Tumor
-0.6
455
Tumor
-0.7
523
Tumor
-0.7
951
Tumor
-0.7
573
Tumor
-0.7
943
Tumor
-0.7
813
Tumor
-0.7
743
Tumor
-0.8
937
Tumor
-0.8
975
Tumor
-0.8
517
Tumor
-0.8
663
Tumor
-0.8
957
Tumor
-0.8
1031
Tumor
-0.8
357
Tumor
-0.9
493
Tumor
-0.9
641
Tumor
-0.9
923
Tumor
-0.9
125
Tumor
-0.9
881
Tumor
-0.9
865
Tumor
-0.9
647
Tumor
-0.9
375
Tumor
-0.9
727
Tumor
-0.9
367
Tumor
-0.9
355
Tumor
-0.9
1013
Tumor
-0.9
147
Tumor
-0.9
963
Tumor
-0.9
463
Tumor
-0.9
724
Normal
-0.9
311
Tumor
-1.0
953
Tumor
-1.0
661
Tumor
-1.0
351
Tumor
-1.0
271
Tumor
-1.0
917
Tumor
-1.0
363
Tumor
-1.0
545
Tumor
-1.0
471
Tumor
-1.1
227
Tumor
-1.1
497
Tumor
-1.1
697
Tumor
-1.1
343
Tumor
-1.1
221
Tumor
-1.1
491
Tumor
-1.1
525
Tumor
-1.1
965
Tumor
-1.1
331
Tumor
-1.1
553
Tumor
-1.2
277
Tumor
-1.3
385
Tumor
-1.3
877
Tumor
-1.3
817
Tumor
-1.3
671
Tumor
-1.5
283
Tumor
-1.5
473
Tumor
-1.5
983
Tumor
-1.6
211
Tumor
-1.9
285
Tumor
-2.0
921
Tumor
-2.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
