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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CACYBP is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
164.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
133.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
120.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
97.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
94.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
92.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
91.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
78.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
76.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
66.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
66.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
66.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
66.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
62.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
61.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
59.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
58.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
58.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
58.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
57.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
55.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
55.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
54.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
54.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
52.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
52.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
52.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
51.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
50.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
50.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
49.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
48.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
48.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
46.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
45.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
45.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
45.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
44.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
44.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
44.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
44.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
44.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
44.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
43.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
43.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
43.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
43.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
43.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
40.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
40.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
40.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
39.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
39.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
39.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
39.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
39.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
39.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
39.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
38.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
38.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
38.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
38.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
38.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
38.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
37.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
37.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
37.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
36.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
36.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
36.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
36.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
36.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
36.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
36.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
36.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
35.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
35.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
35.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
35.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
34.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
34.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
34.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
33.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
33.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
32.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
32.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
31.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
31.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
31.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
31.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
30.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
30.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
30.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
30.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
30.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
29.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
29.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
29.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
29.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
29.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
28.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
28.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
28.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
28.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
28.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
28.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
28.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
28.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
28.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
28.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
28.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
27.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
27.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
26.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
26.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
26.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
26.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
25.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
25.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
25.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
25.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
25.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
25.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
25.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
25.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
25.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
24.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
24.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
24.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
24.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
24.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
24.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
23.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
21.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
21.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
21.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
20.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
19.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
19.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
18.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
18.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
17.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CACYBP is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.3
Number of samples
231
Samples
Sample
Description
TPM
DO48733
0 years, male, NA, stage:2, alive, 600 days
94.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
81.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
76.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
73.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
72.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
67.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
66.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
63.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
57.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
55.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
55.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
50.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
50.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
47.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
44.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
43.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
43.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
43.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
43.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
42.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
42.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
42.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
42.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
41.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
41.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
40.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
40.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
40.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
39.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
38.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
38.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
38.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
38.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
38.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
37.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
37.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
37.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
35.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
35.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
35.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
35.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
35.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
34.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
34.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
34.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
33.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
33.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
33.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
33.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
33.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
33.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
32.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
32.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
32.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
31.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
31.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
31.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
31.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
30.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
30.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
30.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
29.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
29.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
29.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
29.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
29.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
29.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
29.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
29.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
29.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
28.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
28.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
28.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
28.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
28.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
27.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
27.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
26.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
26.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
24.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
23.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
23.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
22.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
20.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.6
491
Tumor
1.4
865
Tumor
1.3
663
Tumor
1.3
743
Tumor
1.2
1013
Tumor
1.2
965
Tumor
1.1
385
Tumor
1.1
537
Tumor
1.1
951
Tumor
1.0
533
Tumor
1.0
123
Tumor
1.0
147
Tumor
1.0
571
Tumor
1.0
313
Tumor
0.9
525
Tumor
0.9
1031
Tumor
0.8
473
Tumor
0.8
977
Tumor
0.8
517
Tumor
0.8
283
Tumor
0.8
231
Tumor
0.8
131
Tumor
0.8
1021
Tumor
0.8
953
Tumor
0.8
724
Normal
0.7
523
Tumor
0.7
425
Tumor
0.7
211
Tumor
0.7
357
Tumor
0.7
125
Tumor
0.6
221
Tumor
0.6
923
Tumor
0.6
171
Tumor
0.6
921
Tumor
0.6
443
Tumor
0.6
161
Tumor
0.6
435
Tumor
0.6
745
Tumor
0.6
553
Tumor
0.6
351
Tumor
0.6
411
Tumor
0.5
267
Tumor
0.5
697
Tumor
0.5
573
Tumor
0.5
271
Tumor
0.5
1027
Tumor
0.5
661
Tumor
0.4
635
Tumor
0.4
487
Tumor
0.4
1025
Tumor
0.4
567
Tumor
0.4
497
Tumor
0.4
375
Tumor
0.4
777
Tumor
0.4
447
Tumor
0.4
213
Tumor
0.4
823
Tumor
0.4
1043
Tumor
0.4
277
Tumor
0.4
877
Tumor
0.4
127
Tumor
0.4
975
Tumor
0.3
883
Tumor
0.3
477
Tumor
0.3
483
Tumor
0.3
695
Tumor
0.3
257
Tumor
0.3
433
Tumor
0.3
983
Tumor
0.3
715
Tumor
0.3
451
Tumor
0.3
647
Tumor
0.3
331
Tumor
0.3
227
Tumor
0.3
297
Tumor
0.3
355
Tumor
0.2
665
Tumor
0.2
685
Tumor
0.2
963
Tumor
0.2
191
Tumor
0.2
391
Tumor
0.2
641
Tumor
0.2
545
Tumor
0.2
493
Tumor
0.2
471
Tumor
0.2
361
Tumor
0.2
557
Tumor
0.2
367
Tumor
0.2
915
Tumor
0.2
415
Tumor
0.2
112
Tumor
0.1
481
Tumor
0.1
217
Tumor
0.1
185
Tumor
0.1
873
Tumor
0.1
943
Tumor
0.1
527
Tumor
0.1
387
Tumor
0.1
445
Tumor
0.1
413
Tumor
0.1
515
Tumor
0.1
937
Tumor
0.1
881
Tumor
0.0
1041
Tumor
0.0
671
Tumor
0.0
925
Tumor
0.0
463
Tumor
0.0
343
Tumor
0.0
423
Tumor
0.0
851
Tumor
0.0
737
Tumor
0.0
741
Tumor
0.0
393
Tumor
-0.1
1014
Normal
-0.1
911
Tumor
-0.1
861
Tumor
-0.1
535
Tumor
-0.1
187
Tumor
-0.1
742
Normal
-0.1
484
Normal
-0.1
383
Tumor
-0.1
978
Normal
-0.1
427
Tumor
-0.1
721
Tumor
-0.1
513
Tumor
-0.1
817
Tumor
-0.1
341
Tumor
-0.1
964
Normal
-0.1
813
Tumor
-0.2
482
Normal
-0.2
524
Normal
-0.2
554
Normal
-0.2
311
Tumor
-0.2
867
Tumor
-0.2
141
Tumor
-0.2
958
Normal
-0.2
298
Normal
-0.2
857
Tumor
-0.2
938
Normal
-0.2
461
Tumor
-0.2
145
Tumor
-0.2
615
Tumor
-0.2
1044
Normal
-0.2
135
Tumor
-0.2
536
Normal
-0.2
944
Normal
-0.2
534
Normal
-0.2
966
Normal
-0.2
727
Tumor
-0.2
327
Tumor
-0.2
913
Tumor
-0.2
332
Normal
-0.2
285
Tumor
-0.2
113
Tumor
-0.2
814
Normal
-0.3
967
Tumor
-0.3
261
Tumor
-0.3
465
Tumor
-0.3
232
Normal
-0.3
714
Normal
-0.3
384
Normal
-0.3
738
Normal
-0.3
488
Normal
-0.3
1026
Normal
-0.3
514
Normal
-0.3
431
Tumor
-0.3
922
Normal
-0.3
628
Normal
-0.3
698
Normal
-0.3
912
Normal
-0.3
448
Normal
-0.3
472
Normal
-0.3
111
Normal
-0.3
955
Tumor
-0.3
528
Normal
-0.3
954
Normal
-0.3
455
Tumor
-0.3
218
Normal
-0.3
713
Tumor
-0.3
818
Normal
-0.3
223
Tumor
-0.3
421
Tumor
-0.3
862
Normal
-0.3
824
Normal
-0.3
314
Normal
-0.3
434
Normal
-0.3
148
Normal
-0.3
1045
Tumor
-0.3
262
Normal
-0.3
917
Tumor
-0.3
1022
Normal
-0.3
426
Normal
-0.3
815
Tumor
-0.3
128
Normal
-0.3
723
Tumor
-0.4
478
Normal
-0.4
636
Normal
-0.4
492
Normal
-0.4
546
Normal
-0.4
258
Normal
-0.4
162
Normal
-0.4
376
Normal
-0.4
114
Normal
-0.4
744
Normal
-0.4
362
Normal
-0.4
968
Normal
-0.4
462
Normal
-0.4
272
Normal
-0.4
224
Normal
-0.4
518
Normal
-0.4
366
Normal
-0.4
952
Normal
-0.4
286
Normal
-0.4
444
Normal
-0.4
538
Normal
-0.4
1015
Tumor
-0.4
984
Normal
-0.4
1028
Normal
-0.4
1046
Normal
-0.4
388
Normal
-0.4
284
Normal
-0.4
956
Normal
-0.4
228
Normal
-0.4
396
Normal
-0.4
368
Normal
-0.4
982
Normal
-0.4
516
Normal
-0.4
756
Normal
-0.4
364
Normal
-0.4
728
Normal
-0.4
785
Tumor
-0.4
356
Normal
-0.4
494
Normal
-0.4
365
Tumor
-0.4
858
Normal
-0.4
572
Normal
-0.4
436
Normal
-0.4
648
Normal
-0.4
467
Tumor
-0.4
222
Normal
-0.4
172
Normal
-0.4
746
Normal
-0.4
686
Normal
-0.4
498
Normal
-0.4
432
Normal
-0.4
568
Normal
-0.4
884
Normal
-0.4
664
Normal
-0.4
918
Normal
-0.4
863
Tumor
-0.4
363
Tumor
-0.4
558
Normal
-0.4
474
Normal
-0.4
816
Normal
-0.4
924
Normal
-0.4
666
Normal
-0.5
916
Normal
-0.5
786
Normal
-0.5
138
Normal
-0.5
412
Normal
-0.5
882
Normal
-0.5
196
Normal
-0.5
422
Normal
-0.5
926
Normal
-0.5
428
Normal
-0.5
981
Tumor
-0.5
142
Normal
-0.5
1032
Normal
-0.5
878
Normal
-0.5
616
Normal
-0.5
414
Normal
-0.5
212
Normal
-0.5
386
Normal
-0.5
852
Normal
-0.5
394
Normal
-0.5
866
Normal
-0.5
424
Normal
-0.5
696
Normal
-0.5
188
Normal
-0.5
662
Normal
-0.5
352
Normal
-0.5
722
Normal
-0.5
778
Normal
-0.5
864
Normal
-0.5
132
Normal
-0.5
124
Normal
-0.5
312
Normal
-0.5
526
Normal
-0.5
1016
Normal
-0.5
278
Normal
-0.5
868
Normal
-0.5
976
Normal
-0.5
446
Normal
-0.5
617
Tumor
-0.5
137
Tumor
-0.5
716
Normal
-0.5
186
Normal
-0.5
416
Normal
-0.5
126
Normal
-0.5
618
Normal
-0.5
755
Tumor
-0.5
395
Tumor
-0.5
563
Tumor
-0.5
214
Normal
-0.5
358
Normal
-0.5
672
Normal
-0.5
564
Normal
-0.6
136
Normal
-0.6
342
Normal
-0.6
466
Normal
-0.6
642
Normal
-0.6
914
Normal
-0.6
392
Normal
-0.6
456
Normal
-0.6
268
Normal
-0.6
874
Normal
-0.6
353
Tumor
-0.6
146
Normal
-0.6
344
Normal
-0.6
1042
Normal
-0.6
627
Tumor
-0.6
468
Normal
-0.6
195
Tumor
-0.7
574
Normal
-0.7
354
Normal
-0.7
328
Normal
-0.7
192
Normal
-0.7
464
Normal
-0.8
452
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
