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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FARSB is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
8.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FARSB is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.2
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
69.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
43.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
43.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
42.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
41.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
38.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
37.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
36.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
35.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
34.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
32.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
32.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
32.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
32.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
31.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
30.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
30.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
29.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
29.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
28.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
28.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
28.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
27.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
26.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
26.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
26.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
26.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
25.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
25.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
25.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
24.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
24.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
24.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
23.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
23.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
18.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
17.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
331
Tumor
0.9
527
Tumor
0.9
685
Tumor
0.9
327
Tumor
0.8
815
Tumor
0.8
567
Tumor
0.8
431
Tumor
0.8
743
Tumor
0.8
171
Tumor
0.7
925
Tumor
0.7
131
Tumor
0.7
137
Tumor
0.7
1013
Tumor
0.7
413
Tumor
0.7
443
Tumor
0.6
483
Tumor
0.6
227
Tumor
0.6
367
Tumor
0.6
951
Tumor
0.6
967
Tumor
0.5
1021
Tumor
0.5
557
Tumor
0.5
471
Tumor
0.5
427
Tumor
0.5
537
Tumor
0.5
1027
Tumor
0.5
977
Tumor
0.5
357
Tumor
0.5
445
Tumor
0.5
553
Tumor
0.4
271
Tumor
0.4
523
Tumor
0.4
635
Tumor
0.4
285
Tumor
0.4
1031
Tumor
0.4
983
Tumor
0.4
455
Tumor
0.4
517
Tumor
0.4
865
Tumor
0.4
665
Tumor
0.4
515
Tumor
0.4
383
Tumor
0.4
363
Tumor
0.4
463
Tumor
0.4
715
Tumor
0.4
697
Tumor
0.4
491
Tumor
0.4
533
Tumor
0.4
883
Tumor
0.4
493
Tumor
0.4
737
Tumor
0.4
375
Tumor
0.4
393
Tumor
0.3
351
Tumor
0.3
953
Tumor
0.3
881
Tumor
0.3
755
Tumor
0.3
981
Tumor
0.3
451
Tumor
0.3
571
Tumor
0.3
813
Tumor
0.3
915
Tumor
0.3
535
Tumor
0.2
863
Tumor
0.2
112
Tumor
0.2
135
Tumor
0.2
415
Tumor
0.2
421
Tumor
0.2
1041
Tumor
0.2
724
Normal
0.2
573
Tumor
0.2
741
Tumor
0.2
1043
Tumor
0.2
525
Tumor
0.2
311
Tumor
0.2
867
Tumor
0.2
1025
Tumor
0.2
823
Tumor
0.2
465
Tumor
0.2
261
Tumor
0.2
395
Tumor
0.2
627
Tumor
0.2
113
Tumor
0.2
955
Tumor
0.1
923
Tumor
0.1
461
Tumor
0.1
195
Tumor
0.1
391
Tumor
0.1
387
Tumor
0.1
877
Tumor
0.1
128
Normal
0.1
297
Tumor
0.1
125
Tumor
0.1
873
Tumor
0.1
353
Tumor
0.1
231
Tumor
0.1
727
Tumor
0.1
921
Tumor
0.1
147
Tumor
0.1
127
Tumor
0.1
385
Tumor
0.1
661
Tumor
0.1
185
Tumor
0.1
223
Tumor
0.1
617
Tumor
0.1
361
Tumor
0.1
473
Tumor
0.1
283
Tumor
0.1
965
Tumor
0.1
477
Tumor
0.0
425
Tumor
0.0
213
Tumor
0.0
963
Tumor
0.0
777
Tumor
0.0
487
Tumor
0.0
313
Tumor
0.0
615
Tumor
0.0
975
Tumor
0.0
497
Tumor
0.0
641
Tumor
0.0
277
Tumor
0.0
857
Tumor
0.0
563
Tumor
0.0
435
Tumor
0.0
647
Tumor
0.0
956
Normal
0.0
365
Tumor
0.0
221
Tumor
0.0
123
Tumor
0.0
695
Tumor
0.0
211
Tumor
0.0
663
Tumor
-0.1
466
Normal
-0.1
1015
Tumor
-0.1
481
Tumor
-0.1
745
Tumor
-0.1
516
Normal
-0.1
861
Tumor
-0.1
513
Tumor
-0.1
558
Normal
-0.1
618
Normal
-0.1
474
Normal
-0.1
257
Tumor
-0.1
1032
Normal
-0.1
671
Tumor
-0.1
924
Normal
-0.1
944
Normal
-0.1
913
Tumor
-0.1
1028
Normal
-0.1
447
Tumor
-0.1
312
Normal
-0.1
814
Normal
-0.1
228
Normal
-0.1
172
Normal
-0.1
344
Normal
-0.1
314
Normal
-0.1
328
Normal
-0.1
568
Normal
-0.1
278
Normal
-0.1
636
Normal
-0.1
416
Normal
-0.1
728
Normal
-0.1
966
Normal
-0.1
616
Normal
-0.2
534
Normal
-0.2
642
Normal
-0.2
738
Normal
-0.2
817
Tumor
-0.2
284
Normal
-0.2
746
Normal
-0.2
1022
Normal
-0.2
114
Normal
-0.2
922
Normal
-0.2
918
Normal
-0.2
957
Tumor
-0.2
494
Normal
-0.2
126
Normal
-0.2
214
Normal
-0.2
448
Normal
-0.2
572
Normal
-0.2
864
Normal
-0.2
142
Normal
-0.2
343
Tumor
-0.2
943
Tumor
-0.2
721
Tumor
-0.2
554
Normal
-0.2
852
Normal
-0.2
524
Normal
-0.2
492
Normal
-0.2
452
Normal
-0.2
1026
Normal
-0.2
422
Normal
-0.2
536
Normal
-0.2
851
Tumor
-0.2
376
Normal
-0.2
352
Normal
-0.2
332
Normal
-0.2
514
Normal
-0.2
628
Normal
-0.2
132
Normal
-0.2
756
Normal
-0.2
362
Normal
-0.2
446
Normal
-0.2
224
Normal
-0.2
546
Normal
-0.2
468
Normal
-0.2
428
Normal
-0.2
488
Normal
-0.2
723
Tumor
-0.2
384
Normal
-0.2
124
Normal
-0.2
982
Normal
-0.2
188
Normal
-0.2
937
Tumor
-0.2
136
Normal
-0.2
1042
Normal
-0.2
713
Tumor
-0.2
432
Normal
-0.2
785
Tumor
-0.2
976
Normal
-0.2
698
Normal
-0.2
191
Tumor
-0.2
952
Normal
-0.2
526
Normal
-0.2
1014
Normal
-0.2
436
Normal
-0.2
411
Tumor
-0.2
818
Normal
-0.2
217
Tumor
-0.2
545
Tumor
-0.2
917
Tumor
-0.2
423
Tumor
-0.2
968
Normal
-0.2
484
Normal
-0.2
232
Normal
-0.2
862
Normal
-0.2
984
Normal
-0.2
964
Normal
-0.3
778
Normal
-0.3
414
Normal
-0.3
141
Tumor
-0.3
978
Normal
-0.3
916
Normal
-0.3
148
Normal
-0.3
187
Tumor
-0.3
528
Normal
-0.3
186
Normal
-0.3
342
Normal
-0.3
392
Normal
-0.3
538
Normal
-0.3
298
Normal
-0.3
816
Normal
-0.3
368
Normal
-0.3
1045
Tumor
-0.3
722
Normal
-0.3
138
Normal
-0.3
111
Normal
-0.3
358
Normal
-0.3
866
Normal
-0.3
426
Normal
-0.3
1016
Normal
-0.3
648
Normal
-0.3
926
Normal
-0.3
874
Normal
-0.3
196
Normal
-0.3
354
Normal
-0.3
696
Normal
-0.3
364
Normal
-0.3
868
Normal
-0.3
424
Normal
-0.3
564
Normal
-0.3
462
Normal
-0.3
386
Normal
-0.3
518
Normal
-0.3
958
Normal
-0.3
355
Tumor
-0.3
1044
Normal
-0.3
478
Normal
-0.3
686
Normal
-0.3
146
Normal
-0.3
878
Normal
-0.3
286
Normal
-0.3
456
Normal
-0.3
356
Normal
-0.3
824
Normal
-0.3
714
Normal
-0.3
911
Tumor
-0.3
388
Normal
-0.3
914
Normal
-0.3
272
Normal
-0.3
464
Normal
-0.4
366
Normal
-0.4
162
Normal
-0.4
341
Tumor
-0.4
433
Tumor
-0.4
482
Normal
-0.4
574
Normal
-0.4
396
Normal
-0.4
954
Normal
-0.4
716
Normal
-0.4
161
Tumor
-0.4
258
Normal
-0.4
882
Normal
-0.4
938
Normal
-0.4
212
Normal
-0.4
744
Normal
-0.4
412
Normal
-0.4
434
Normal
-0.4
884
Normal
-0.4
858
Normal
-0.4
1046
Normal
-0.4
394
Normal
-0.4
192
Normal
-0.4
467
Tumor
-0.4
444
Normal
-0.4
218
Normal
-0.4
498
Normal
-0.4
786
Normal
-0.4
222
Normal
-0.4
742
Normal
-0.4
262
Normal
-0.5
472
Normal
-0.5
672
Normal
-0.5
912
Normal
-0.5
664
Normal
-0.5
666
Normal
-0.5
662
Normal
-0.5
268
Normal
-0.6
145
Tumor
-0.7
267
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
