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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB3GAP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
20.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB3GAP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.7
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
0.9
147
Tumor
0.8
131
Tumor
0.8
745
Tumor
0.8
553
Tumor
0.8
271
Tumor
0.7
1043
Tumor
0.7
445
Tumor
0.7
641
Tumor
0.7
951
Tumor
0.6
537
Tumor
0.5
257
Tumor
0.5
727
Tumor
0.5
963
Tumor
0.5
1013
Tumor
0.5
567
Tumor
0.5
977
Tumor
0.4
1025
Tumor
0.4
357
Tumor
0.4
463
Tumor
0.4
1021
Tumor
0.4
1027
Tumor
0.4
1031
Tumor
0.4
965
Tumor
0.4
285
Tumor
0.4
523
Tumor
0.4
351
Tumor
0.4
517
Tumor
0.4
435
Tumor
0.4
525
Tumor
0.4
283
Tumor
0.4
867
Tumor
0.4
724
Normal
0.3
533
Tumor
0.3
331
Tumor
0.3
471
Tumor
0.3
411
Tumor
0.3
741
Tumor
0.3
491
Tumor
0.3
915
Tumor
0.3
211
Tumor
0.3
545
Tumor
0.3
171
Tumor
0.3
363
Tumor
0.3
527
Tumor
0.3
877
Tumor
0.3
921
Tumor
0.3
451
Tumor
0.3
375
Tumor
0.2
695
Tumor
0.2
313
Tumor
0.2
983
Tumor
0.2
227
Tumor
0.2
713
Tumor
0.2
231
Tumor
0.2
863
Tumor
0.2
125
Tumor
0.2
385
Tumor
0.2
473
Tumor
0.2
721
Tumor
0.2
343
Tumor
0.2
515
Tumor
0.2
455
Tumor
0.2
1041
Tumor
0.2
957
Tumor
0.2
883
Tumor
0.2
715
Tumor
0.2
297
Tumor
0.2
483
Tumor
0.2
481
Tumor
0.2
911
Tumor
0.2
223
Tumor
0.2
497
Tumor
0.2
967
Tumor
0.2
477
Tumor
0.1
881
Tumor
0.1
953
Tumor
0.1
573
Tumor
0.1
663
Tumor
0.1
431
Tumor
0.1
671
Tumor
0.1
213
Tumor
0.1
277
Tumor
0.1
857
Tumor
0.1
571
Tumor
0.1
685
Tumor
0.1
975
Tumor
0.1
123
Tumor
0.1
137
Tumor
0.1
861
Tumor
0.1
661
Tumor
0.1
737
Tumor
0.1
697
Tumor
0.1
425
Tumor
0.1
191
Tumor
0.1
917
Tumor
0.1
981
Tumor
0.1
447
Tumor
0.1
135
Tumor
0.1
482
Normal
0.1
755
Tumor
0.0
261
Tumor
0.0
393
Tumor
0.0
554
Normal
0.0
1026
Normal
0.0
145
Tumor
0.0
817
Tumor
0.0
744
Normal
0.0
617
Tumor
0.0
461
Tumor
0.0
923
Tumor
0.0
1015
Tumor
0.0
185
Tumor
0.0
221
Tumor
0.0
367
Tumor
0.0
535
Tumor
0.0
785
Tumor
0.0
423
Tumor
0.0
738
Normal
0.0
161
Tumor
0.0
851
Tumor
0.0
615
Tumor
0.0
925
Tumor
0.0
361
Tumor
0.0
465
Tumor
0.0
493
Tumor
0.0
391
Tumor
0.0
873
Tumor
0.0
421
Tumor
0.0
462
Normal
0.0
723
Tumor
0.0
472
Normal
0.0
132
Normal
0.0
952
Normal
0.0
1022
Normal
0.0
815
Tumor
0.0
777
Tumor
0.0
698
Normal
0.0
627
Tumor
0.0
823
Tumor
0.0
113
Tumor
0.0
557
Tumor
0.0
813
Tumor
0.0
415
Tumor
0.0
913
Tumor
0.0
127
Tumor
0.0
452
Normal
0.0
616
Normal
0.0
696
Normal
-0.1
484
Normal
-0.1
966
Normal
-0.1
474
Normal
-0.1
443
Tumor
-0.1
217
Tumor
-0.1
722
Normal
-0.1
426
Normal
-0.1
436
Normal
-0.1
536
Normal
-0.1
943
Tumor
-0.1
924
Normal
-0.1
355
Tumor
-0.1
742
Normal
-0.1
728
Normal
-0.1
538
Normal
-0.1
433
Tumor
-0.1
492
Normal
-0.1
778
Normal
-0.1
852
Normal
-0.1
342
Normal
-0.1
456
Normal
-0.1
518
Normal
-0.1
1014
Normal
-0.1
1028
Normal
-0.1
298
Normal
-0.1
1045
Tumor
-0.1
978
Normal
-0.1
636
Normal
-0.1
816
Normal
-0.1
365
Tumor
-0.1
141
Tumor
-0.1
448
Normal
-0.1
278
Normal
-0.1
665
Tumor
-0.1
311
Tumor
-0.1
214
Normal
-0.1
124
Normal
-0.1
982
Normal
-0.1
635
Tumor
-0.1
956
Normal
-0.1
746
Normal
-0.1
358
Normal
-0.1
434
Normal
-0.1
466
Normal
-0.1
862
Normal
-0.1
128
Normal
-0.1
714
Normal
-0.1
146
Normal
-0.1
814
Normal
-0.1
327
Tumor
-0.1
914
Normal
-0.1
392
Normal
-0.1
786
Normal
-0.1
412
Normal
-0.1
138
Normal
-0.1
955
Tumor
-0.1
618
Normal
-0.1
344
Normal
-0.1
546
Normal
-0.1
1032
Normal
-0.1
964
Normal
-0.1
136
Normal
-0.1
976
Normal
-0.1
478
Normal
-0.1
356
Normal
-0.1
111
Normal
-0.1
464
Normal
-0.1
394
Normal
-0.1
341
Tumor
-0.1
112
Tumor
-0.1
262
Normal
-0.1
824
Normal
-0.1
142
Normal
-0.1
944
Normal
-0.2
516
Normal
-0.2
396
Normal
-0.2
114
Normal
-0.2
984
Normal
-0.2
1016
Normal
-0.2
1042
Normal
-0.2
314
Normal
-0.2
353
Tumor
-0.2
1044
Normal
-0.2
218
Normal
-0.2
268
Normal
-0.2
383
Tumor
-0.2
258
Normal
-0.2
364
Normal
-0.2
387
Tumor
-0.2
328
Normal
-0.2
332
Normal
-0.2
968
Normal
-0.2
716
Normal
-0.2
188
Normal
-0.2
413
Tumor
-0.2
422
Normal
-0.2
468
Normal
-0.2
386
Normal
-0.2
756
Normal
-0.2
874
Normal
-0.2
366
Normal
-0.2
572
Normal
-0.2
187
Tumor
-0.2
818
Normal
-0.2
628
Normal
-0.2
196
Normal
-0.2
686
Normal
-0.2
882
Normal
-0.2
642
Normal
-0.2
286
Normal
-0.2
284
Normal
-0.2
427
Tumor
-0.2
172
Normal
-0.2
494
Normal
-0.2
416
Normal
-0.2
864
Normal
-0.2
222
Normal
-0.2
388
Normal
-0.2
272
Normal
-0.2
395
Tumor
-0.2
312
Normal
-0.2
232
Normal
-0.2
922
Normal
-0.2
938
Normal
-0.2
878
Normal
-0.2
148
Normal
-0.2
488
Normal
-0.2
376
Normal
-0.2
354
Normal
-0.2
424
Normal
-0.2
534
Normal
-0.2
228
Normal
-0.2
368
Normal
-0.2
487
Tumor
-0.2
866
Normal
-0.2
868
Normal
-0.2
212
Normal
-0.2
195
Tumor
-0.2
186
Normal
-0.2
352
Normal
-0.2
432
Normal
-0.2
162
Normal
-0.2
267
Tumor
-0.2
918
Normal
-0.2
858
Normal
-0.2
1046
Normal
-0.2
224
Normal
-0.3
446
Normal
-0.3
563
Tumor
-0.3
428
Normal
-0.3
126
Normal
-0.3
926
Normal
-0.3
672
Normal
-0.3
498
Normal
-0.3
662
Normal
-0.3
954
Normal
-0.3
362
Normal
-0.3
916
Normal
-0.3
568
Normal
-0.3
414
Normal
-0.3
558
Normal
-0.3
647
Tumor
-0.3
664
Normal
-0.3
884
Normal
-0.3
865
Tumor
-0.3
444
Normal
-0.3
912
Normal
-0.3
958
Normal
-0.3
564
Normal
-0.3
528
Normal
-0.3
192
Normal
-0.3
574
Normal
-0.3
524
Normal
-0.3
648
Normal
-0.3
513
Tumor
-0.4
526
Normal
-0.4
514
Normal
-0.4
666
Normal
-0.4
384
Normal
-0.4
937
Tumor
-0.5
467
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
