MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.8 nTPM
HPA Brain:30.7 nTPM
GTEx:12.8 nTPM
FANTOM5:11.0 Scaled Tags Per Million
Pig:105.7 nTPM
Mouse:57.2 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.3
2586 Male, age 75, left hemisphere 37.2
2019 Male, age 18, unknown 27.3
1827 Male, age 72, unknown 27.2
2828 Female, age 72, unknown 25.3
2411 Female, age 72, unknown 22.9
1833 Male, age 53, unknown 21.7
1870 Female, age 42, unknown 21.2
2666 Male, age 74, left hemisphere 21.2
2219 Male, age 76, both hemispheres 20.2
1830 Male, age 51, unknown 18.9
Dorsal raphe nucleus
nTPM: 18.5
1828 Male, age 53, unknown 20.2
2298 Female, age 72, unknown 19.2
2750 Male, age 76, both hemispheres 18.1
2016 Female, age 72, unknown 17.8
2047 Male, age 72, unknown 16.9
Inferior colliculus
nTPM: 24.8
2097 Female, age 72, unknown 30.5
1890 Male, age 53, unknown 25.0
1848 Female, age 42, unknown 23.2
2849 Male, age 72, unknown 20.4
Median raphe nucleus
nTPM: 16.7
2220 Male, age 76, midline 16.7
Periaquaductal grey, anterior
nTPM: 26.0
1795 Male, age 51, unknown 28.1
2502 Female, age 75, unknown 25.9
1947 Male, age 18, unknown 23.9
Periaquaductal grey, dorsal
nTPM: 21.9
1831 Male, age 72, unknown 26.0
1840 Male, age 53, unknown 23.5
2464 Female, age 72, unknown 21.0
2850 Male, age 76, both hemispheres 17.1
Periaquaductal grey, lateral
nTPM: 20.8
2053 Male, age 18, unknown 25.1
2140 Male, age 76, both hemispheres 18.8
2272 Male, age 74, both hemispheres 18.4
Pretectal area
nTPM: 30.7
2007 Male, age 72, unknown 44.9
1816 Male, age 51, unknown 44.2
1817 Female, age 42, unknown 39.7
1944 Female, age 72, unknown 38.7
1815 Male, age 53, unknown 35.0
2407 Male, age 75, both hemispheres 28.6
2667 Female, age 75, unknown 26.9
2273 Male, age 74, both hemispheres 23.5
2825 Male, age 18, unknown 19.7
2316 Male, age 76, right hemisphere 19.0
2224 Female, age 72, unknown 18.1
Red nucleus
nTPM: 23.1
2785 Male, age 18, unknown 26.7
1821 Female, age 72, unknown 25.0
2588 Male, age 74, left hemisphere 24.3
2725 Female, age 75, unknown 24.2
1904 Male, age 53, unknown 23.7
2584 Male, age 75, left hemisphere 23.5
2503 Female, age 72, unknown 23.1
2823 Male, age 76, right hemisphere 22.9
1865 Male, age 51, unknown 21.9
1954 Female, age 42, unknown 21.4
2227 Male, age 72, unknown 20.2
2769 Male, age 72, unknown 19.9
Substantia nigra
nTPM: 22.8
1889 Female, age 72, unknown 36.3
2583 Male, age 75, right hemisphere 27.4
2409 Female, age 72, unknown 23.0
2590 Female, age 75, unknown 22.6
1916 Female, age 42, unknown 21.7
1851 Male, age 51, unknown 21.6
2665 Male, age 74, both hemispheres 21.6
1941 Male, age 53, unknown 19.2
2241 Male, age 72, unknown 18.3
2699 Male, age 18, unknown 16.0
Superior colliculus
nTPM: 27.6
2261 Male, age 18, unknown 37.2
2087 Female, age 72, unknown 33.3
2664 Male, age 75, both hemispheres 31.8
2668 Female, age 75, unknown 27.5
1995 Male, age 72, unknown 26.8
1796 Male, age 53, unknown 26.4
1913 Female, age 42, unknown 25.4
1895 Male, age 76, right hemisphere 25.2
1839 Male, age 51, unknown 22.4
2587 Male, age 74, left hemisphere 19.6
Ventral tegmental area
nTPM: 19.8
2410 Female, age 72, unknown 23.7
2218 Male, age 76, both hemispheres 20.7
1942 Male, age 51, unknown 19.7
2223 Female, age 72, unknown 19.3
1915 Female, age 42, unknown 18.0
2021 Male, age 53, unknown 17.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.8
Samples: 139

Max nTPM: 23.6
Min nTPM: 7.3
Std nTPM: 2.4
Median nTPM: 12.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 23.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 19.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 18.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 17.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 17.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 17.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 17.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 16.6
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 16.6
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 16.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 16.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 11.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.0
FF:10158-103A5 76 years, female 11.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 105.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 91.0
Samples: 4

Max nTPM: 111.3
Min nTPM: 58.1
Sample A Female 106.8
Sample B Female 58.1
Sample C Male 87.8
Sample D Male 111.3
Midbrain
nTPM: 105.7
Samples: 4

Max nTPM: 181.0
Min nTPM: 72.9
Sample A Female 181.0
Sample B Female 93.9
Sample C Male 74.9
Sample D Male 72.9
Periaqueductal gray
nTPM: 66.6
Samples: 3

Max nTPM: 76.1
Min nTPM: 61.3
Sample B Female 76.1
Sample C Male 61.3
Sample D Male 62.4
Superior colliculi
nTPM: 81.1
Samples: 4

Max nTPM: 100.0
Min nTPM: 48.5
Sample A Female 100.0
Sample B Female 48.5
Sample C Male 82.6
Sample D Male 93.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 57.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.2
Samples: 4

Max nTPM: 58.6
Min nTPM: 55.1
Sample A Male 57.5
Sample B Male 57.7
Sample C Female 55.1
Sample D Female 58.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
74657931 Antisense, RP_060220_02_F10, Mouse strain C57BL/6J (56 days, male) 1.1
68919018 Antisense, RP_050301_02_D06, Mouse strain C57BL/6J (56 days, male) 0.2

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