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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HTRA2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
20.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HTRA2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.3
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
23.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
13.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
513
Tumor
1.0
925
Tumor
0.8
1041
Tumor
0.8
563
Tumor
0.7
967
Tumor
0.7
635
Tumor
0.7
227
Tumor
0.7
1027
Tumor
0.6
367
Tumor
0.6
627
Tumor
0.6
685
Tumor
0.6
363
Tumor
0.5
361
Tumor
0.5
641
Tumor
0.5
443
Tumor
0.5
477
Tumor
0.5
231
Tumor
0.4
665
Tumor
0.4
873
Tumor
0.4
186
Normal
0.4
615
Tumor
0.4
867
Tumor
0.4
145
Tumor
0.4
1046
Normal
0.4
172
Normal
0.4
342
Normal
0.4
534
Normal
0.4
452
Normal
0.4
487
Tumor
0.4
785
Tumor
0.4
755
Tumor
0.4
482
Normal
0.4
221
Tumor
0.4
465
Tumor
0.4
423
Tumor
0.3
354
Normal
0.3
358
Normal
0.3
915
Tumor
0.3
357
Tumor
0.3
488
Normal
0.3
473
Tumor
0.3
695
Tumor
0.3
127
Tumor
0.3
185
Tumor
0.3
483
Tumor
0.3
698
Normal
0.3
471
Tumor
0.3
715
Tumor
0.3
426
Normal
0.3
376
Normal
0.3
421
Tumor
0.3
863
Tumor
0.3
553
Tumor
0.3
261
Tumor
0.3
298
Normal
0.3
191
Tumor
0.3
571
Tumor
0.3
937
Tumor
0.2
1015
Tumor
0.2
981
Tumor
0.2
741
Tumor
0.2
818
Normal
0.2
344
Normal
0.2
171
Tumor
0.2
187
Tumor
0.2
427
Tumor
0.2
148
Normal
0.2
162
Normal
0.2
964
Normal
0.2
352
Normal
0.2
554
Normal
0.2
128
Normal
0.2
365
Tumor
0.2
196
Normal
0.2
137
Tumor
0.2
746
Normal
0.2
391
Tumor
0.2
222
Normal
0.2
425
Tumor
0.2
756
Normal
0.2
123
Tumor
0.2
464
Normal
0.2
332
Normal
0.2
1045
Tumor
0.2
132
Normal
0.2
388
Normal
0.2
142
Normal
0.2
436
Normal
0.2
411
Tumor
0.2
911
Tumor
0.2
636
Normal
0.2
466
Normal
0.2
257
Tumor
0.2
314
Normal
0.2
944
Normal
0.2
271
Tumor
0.2
218
Normal
0.2
924
Normal
0.2
883
Tumor
0.2
958
Normal
0.2
722
Normal
0.1
862
Normal
0.1
815
Tumor
0.1
648
Normal
0.1
141
Tumor
0.1
484
Normal
0.1
472
Normal
0.1
327
Tumor
0.1
224
Normal
0.1
546
Normal
0.1
671
Tumor
0.1
285
Tumor
0.1
858
Normal
0.1
533
Tumor
0.1
217
Tumor
0.1
982
Normal
0.1
368
Normal
0.1
976
Normal
0.1
356
Normal
0.1
387
Tumor
0.1
954
Normal
0.1
557
Tumor
0.1
1032
Normal
0.1
877
Tumor
0.1
955
Tumor
0.1
882
Normal
0.1
568
Normal
0.1
124
Normal
0.1
468
Normal
0.1
478
Normal
0.1
713
Tumor
0.1
572
Normal
0.1
467
Tumor
0.1
664
Normal
0.1
384
Normal
0.1
1014
Normal
0.1
414
Normal
0.1
786
Normal
0.1
817
Tumor
0.1
618
Normal
0.1
528
Normal
0.1
666
Normal
0.1
1042
Normal
0.1
214
Normal
0.1
878
Normal
0.1
135
Tumor
0.1
672
Normal
0.1
424
Normal
0.1
394
Normal
0.1
494
Normal
0.1
824
Normal
0.1
642
Normal
0.1
192
Normal
0.1
341
Tumor
0.1
114
Normal
0.1
923
Tumor
0.1
744
Normal
0.1
328
Normal
0.1
362
Normal
0.1
714
Normal
0.1
445
Tumor
0.1
517
Tumor
0.1
481
Tumor
0.1
364
Normal
0.0
278
Normal
0.0
745
Tumor
0.0
161
Tumor
0.0
146
Normal
0.0
286
Normal
0.0
416
Normal
0.0
413
Tumor
0.0
428
Normal
0.0
912
Normal
0.0
984
Normal
0.0
392
Normal
0.0
412
Normal
0.0
616
Normal
0.0
422
Normal
0.0
564
Normal
0.0
232
Normal
0.0
431
Tumor
0.0
353
Tumor
0.0
444
Normal
0.0
938
Normal
0.0
866
Normal
0.0
823
Tumor
0.0
953
Tumor
0.0
721
Tumor
0.0
538
Normal
0.0
922
Normal
0.0
884
Normal
0.0
957
Tumor
0.0
1026
Normal
0.0
228
Normal
0.0
926
Normal
0.0
968
Normal
0.0
1022
Normal
0.0
223
Tumor
0.0
112
Tumor
0.0
258
Normal
0.0
524
Normal
0.0
956
Normal
0.0
537
Tumor
0.0
573
Tumor
0.0
526
Normal
0.0
272
Normal
0.0
366
Normal
0.0
433
Tumor
0.0
696
Normal
0.0
864
Normal
0.0
1031
Tumor
0.0
268
Normal
0.0
331
Tumor
0.0
868
Normal
0.0
435
Tumor
0.0
446
Normal
0.0
462
Normal
0.0
456
Normal
0.0
536
Normal
0.0
396
Normal
0.0
448
Normal
0.0
111
Normal
0.0
386
Normal
0.0
498
Normal
0.0
463
Tumor
0.0
125
Tumor
0.0
393
Tumor
0.0
313
Tumor
0.0
1044
Normal
0.0
535
Tumor
0.0
1028
Normal
0.0
434
Normal
0.0
516
Normal
0.0
474
Normal
0.0
914
Normal
0.0
686
Normal
0.0
262
Normal
0.0
1043
Tumor
0.0
351
Tumor
0.0
451
Tumor
0.0
213
Tumor
-0.1
574
Normal
-0.1
212
Normal
-0.1
432
Normal
-0.1
978
Normal
-0.1
525
Tumor
-0.1
918
Normal
-0.1
523
Tumor
-0.1
816
Normal
-0.1
492
Normal
-0.1
965
Tumor
-0.1
662
Normal
-0.1
921
Tumor
-0.1
188
Normal
-0.1
742
Normal
-0.1
975
Tumor
-0.1
1016
Normal
-0.1
113
Tumor
-0.1
567
Tumor
-0.1
874
Normal
-0.1
852
Normal
-0.1
136
Normal
-0.1
383
Tumor
-0.1
395
Tumor
-0.1
628
Normal
-0.1
514
Normal
-0.1
355
Tumor
-0.1
916
Normal
-0.1
723
Tumor
-0.1
738
Normal
-0.1
461
Tumor
-0.1
716
Normal
-0.1
312
Normal
-0.1
284
Normal
-0.1
966
Normal
-0.1
913
Tumor
-0.1
728
Normal
-0.1
778
Normal
-0.1
126
Normal
-0.1
743
Tumor
-0.1
267
Tumor
-0.1
851
Tumor
-0.1
881
Tumor
-0.1
147
Tumor
-0.1
1025
Tumor
-0.1
493
Tumor
-0.1
1013
Tumor
-0.1
952
Normal
-0.2
455
Tumor
-0.2
545
Tumor
-0.2
297
Tumor
-0.2
558
Normal
-0.2
518
Normal
-0.2
1021
Tumor
-0.2
977
Tumor
-0.2
277
Tumor
-0.2
963
Tumor
-0.2
195
Tumor
-0.2
491
Tumor
-0.2
138
Normal
-0.2
415
Tumor
-0.2
737
Tumor
-0.2
861
Tumor
-0.2
617
Tumor
-0.2
375
Tumor
-0.3
385
Tumor
-0.3
727
Tumor
-0.3
497
Tumor
-0.3
311
Tumor
-0.3
943
Tumor
-0.3
857
Tumor
-0.3
515
Tumor
-0.3
697
Tumor
-0.3
983
Tumor
-0.3
661
Tumor
-0.4
814
Normal
-0.4
283
Tumor
-0.4
777
Tumor
-0.4
647
Tumor
-0.4
447
Tumor
-0.4
951
Tumor
-0.4
917
Tumor
-0.4
131
Tumor
-0.4
663
Tumor
-0.5
865
Tumor
-0.5
813
Tumor
-0.5
527
Tumor
-0.6
724
Normal
-0.7
343
Tumor
-0.7
211
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
