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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS15 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
931.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3499.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3278.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3143.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3072.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2766.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2529.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2353.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2339.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2317.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2237.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2234.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2189.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2140.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2125.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2104.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2048.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2040.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2032.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1986.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1884.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1877.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1863.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1854.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1826.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1822.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1772.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1763.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1734.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1724.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1720.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1691.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1687.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1678.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1651.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1643.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1624.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1616.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1606.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1606.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1563.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1531.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1526.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1514.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1442.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1439.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1431.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1400.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1394.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1385.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1370.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1369.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1364.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1363.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1356.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1352.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1337.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1321.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1312.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1305.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1301.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1299.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1287.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1281.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1276.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1273.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1255.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1237.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1229.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1228.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1224.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1220.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1218.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1217.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1208.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1201.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1183.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1181.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1169.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1154.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1153.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1152.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1149.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1130.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1128.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1113.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1106.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1103.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1102.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1096.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1078.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1071.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1071.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1068.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1068.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1063.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1061.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1060.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1059.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1056.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1048.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1048.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1046.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1034.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1029.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1028.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1026.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1025.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1019.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1017.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1014.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1014.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1013.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1009.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1009.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1006.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
995.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
990.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
990.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
984.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
984.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
974.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
970.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
970.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
969.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
966.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
955.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
952.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
951.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
950.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
947.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
947.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
946.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
943.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
941.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
939.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
933.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
931.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
925.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
912.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
906.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
906.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
904.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
902.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
896.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
896.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
890.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
885.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
875.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
872.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
871.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
871.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
870.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
868.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
867.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
866.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
862.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
860.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
855.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
854.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
854.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
853.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
849.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
847.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
847.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
847.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
844.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
844.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
842.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
842.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
839.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
838.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
837.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
828.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
828.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
825.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
823.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
818.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
817.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
815.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
813.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
812.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
812.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
804.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
803.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
801.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
801.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
799.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
796.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
793.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
793.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
788.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
788.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
785.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
783.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
782.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
782.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
781.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
771.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
770.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
769.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
760.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
760.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
756.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
753.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
750.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
749.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
740.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
737.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
736.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
733.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
725.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
723.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
719.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
716.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
716.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
714.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
714.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
711.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
708.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
702.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
701.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
699.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
696.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
696.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
695.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
691.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
688.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
688.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
686.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
683.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
678.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
673.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
672.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
672.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
670.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
668.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
664.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
661.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
659.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
653.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
653.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
652.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
649.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
649.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
648.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
644.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
644.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
641.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
641.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
640.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
637.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
637.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
635.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
635.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
634.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
632.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
631.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
628.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
625.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
624.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
623.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
621.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
611.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
610.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
610.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
608.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
604.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
603.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
603.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
601.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
600.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
599.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
599.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
597.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
597.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
595.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
594.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
593.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
590.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
584.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
580.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
580.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
575.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
570.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
566.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
565.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
563.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
562.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
561.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
558.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
553.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
552.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
546.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
543.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
543.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
539.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
539.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
537.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
534.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
527.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
526.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
522.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
518.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
517.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
511.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
509.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
508.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
504.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
503.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
498.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
496.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
495.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
494.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
493.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
490.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
488.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
486.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
481.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
481.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
479.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
479.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
477.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
473.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
470.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
467.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
463.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
446.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
446.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
444.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
443.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
442.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
440.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
433.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
433.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
431.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
427.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
427.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
424.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
421.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
413.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
411.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
411.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
404.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
401.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
400.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
399.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
398.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
395.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
393.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
391.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
387.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
384.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
384.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
367.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
367.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
358.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
343.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
327.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
324.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
316.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
310.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS15 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
444.3
Number of samples
231
Samples
Sample
Description
TPM
DO45285
0 years, male, NA, stage:3, alive, 480 days
2428.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
1356.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
1285.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1202.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
1168.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1071.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
1066.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
1065.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
1045.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
1038.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
1025.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
984.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
957.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
941.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
923.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
911.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
892.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
869.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
857.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
829.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
820.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
816.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
807.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
797.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
787.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
769.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
755.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
733.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
724.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
718.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
713.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
679.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
671.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
663.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
658.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
654.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
654.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
652.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
648.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
638.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
635.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
634.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
632.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
628.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
609.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
597.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
595.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
585.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
571.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
569.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
564.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
563.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
562.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
560.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
556.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
553.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
551.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
546.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
545.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
544.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
529.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
528.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
527.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
526.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
517.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
508.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
502.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
491.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
489.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
485.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
473.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
470.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
469.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
468.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
466.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
465.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
463.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
462.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
461.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
457.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
452.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
451.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
449.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
448.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
448.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
440.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
437.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
432.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
430.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
430.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
429.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
422.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
416.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
415.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
414.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
406.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
405.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
404.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
402.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
401.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
400.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
399.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
396.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
395.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
394.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
393.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
393.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
390.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
385.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
385.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
382.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
381.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
381.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
380.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
377.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
376.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
375.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
372.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
371.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
370.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
363.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
362.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
362.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
358.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
357.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
354.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
351.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
349.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
348.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
346.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
345.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
343.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
343.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
335.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
335.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
331.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
329.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
327.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
323.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
322.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
322.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
321.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
316.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
314.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
312.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
311.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
310.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
310.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
308.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
306.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
304.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
302.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
302.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
301.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
296.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
294.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
292.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
290.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
289.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
286.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
285.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
284.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
283.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
283.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
280.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
280.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
280.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
273.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
272.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
270.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
270.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
266.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
266.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
265.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
264.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
262.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
260.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
258.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
257.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
257.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
256.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
256.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
255.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
255.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
253.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
253.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
251.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
248.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
246.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
245.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
244.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
243.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
243.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
236.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
232.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
230.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
229.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
227.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
223.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
222.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
222.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
221.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
221.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
218.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
212.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
211.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
210.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
206.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
205.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
204.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
203.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
198.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
191.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
187.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
185.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
184.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
183.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
174.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
172.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
170.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
164.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
161.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
160.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
160.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
157.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
136.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
126.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
119.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
115.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
101.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
96.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
557
Tumor
0.7
567
Tumor
0.5
367
Tumor
0.5
285
Tumor
0.5
661
Tumor
0.5
467
Tumor
0.4
223
Tumor
0.4
113
Tumor
0.4
617
Tumor
0.4
413
Tumor
0.4
267
Tumor
0.4
353
Tumor
0.4
636
Normal
0.4
743
Tumor
0.4
135
Tumor
0.3
851
Tumor
0.3
435
Tumor
0.3
742
Normal
0.3
436
Normal
0.3
466
Normal
0.3
257
Tumor
0.3
462
Normal
0.3
571
Tumor
0.3
314
Normal
0.3
432
Normal
0.3
443
Tumor
0.3
421
Tumor
0.3
227
Tumor
0.3
445
Tumor
0.3
721
Tumor
0.3
573
Tumor
0.3
724
Normal
0.3
433
Tumor
0.3
422
Normal
0.2
327
Tumor
0.2
111
Normal
0.2
723
Tumor
0.2
425
Tumor
0.2
1021
Tumor
0.2
414
Normal
0.2
514
Normal
0.2
331
Tumor
0.2
187
Tumor
0.2
738
Normal
0.2
815
Tumor
0.2
128
Normal
0.2
814
Normal
0.2
395
Tumor
0.2
745
Tumor
0.2
145
Tumor
0.2
278
Normal
0.2
912
Normal
0.2
1027
Tumor
0.2
423
Tumor
0.2
864
Normal
0.2
385
Tumor
0.2
427
Tumor
0.2
232
Normal
0.2
298
Normal
0.2
186
Normal
0.2
284
Normal
0.2
286
Normal
0.2
393
Tumor
0.2
376
Normal
0.2
114
Normal
0.2
564
Normal
0.2
332
Normal
0.2
866
Normal
0.2
277
Tumor
0.2
147
Tumor
0.2
431
Tumor
0.2
517
Tumor
0.2
647
Tumor
0.2
537
Tumor
0.2
137
Tumor
0.1
628
Normal
0.1
468
Normal
0.1
214
Normal
0.1
824
Normal
0.1
728
Normal
0.1
696
Normal
0.1
451
Tumor
0.1
746
Normal
0.1
452
Normal
0.1
434
Normal
0.1
387
Tumor
0.1
428
Normal
0.1
568
Normal
0.1
545
Tumor
0.1
926
Normal
0.1
351
Tumor
0.1
411
Tumor
0.1
727
Tumor
0.1
528
Normal
0.1
685
Tumor
0.1
497
Tumor
0.1
136
Normal
0.1
786
Normal
0.1
172
Normal
0.1
271
Tumor
0.1
526
Normal
0.1
1015
Tumor
0.1
356
Normal
0.1
195
Tumor
0.1
132
Normal
0.1
518
Normal
0.1
162
Normal
0.1
558
Normal
0.1
384
Normal
0.1
955
Tumor
0.1
813
Tumor
0.1
494
Normal
0.1
446
Normal
0.1
648
Normal
0.1
777
Tumor
0.1
231
Tumor
0.1
722
Normal
0.1
375
Tumor
0.1
191
Tumor
0.1
922
Normal
0.1
686
Normal
0.1
358
Normal
0.1
664
Normal
0.1
572
Normal
0.1
262
Normal
0.1
272
Normal
0.1
465
Tumor
0.1
392
Normal
0.1
426
Normal
0.1
352
Normal
0.1
1016
Normal
0.1
488
Normal
0.1
715
Tumor
0.1
424
Normal
0.1
484
Normal
0.1
662
Normal
0.1
448
Normal
0.1
126
Normal
0.1
481
Tumor
0.1
362
Normal
0.1
918
Normal
0.1
224
Normal
0.1
196
Normal
0.1
188
Normal
0.1
527
Tumor
0.1
261
Tumor
0.1
1026
Normal
0.1
228
Normal
0.1
342
Normal
0.1
138
Normal
0.1
714
Normal
0.1
148
Normal
0.1
884
Normal
0.1
464
Normal
0.1
523
Tumor
0.1
461
Tumor
0.1
365
Tumor
0.1
618
Normal
0.1
716
Normal
0.1
858
Normal
0.1
412
Normal
0.1
124
Normal
0.0
258
Normal
0.0
574
Normal
0.0
865
Tumor
0.0
818
Normal
0.0
312
Normal
0.0
914
Normal
0.0
923
Tumor
0.0
878
Normal
0.0
744
Normal
0.0
778
Normal
0.0
666
Normal
0.0
354
Normal
0.0
862
Normal
0.0
127
Tumor
0.0
984
Normal
0.0
1046
Normal
0.0
967
Tumor
0.0
146
Normal
0.0
852
Normal
0.0
297
Tumor
0.0
218
Normal
0.0
563
Tumor
0.0
366
Normal
0.0
388
Normal
0.0
882
Normal
0.0
816
Normal
0.0
444
Normal
0.0
515
Tumor
0.0
913
Tumor
0.0
344
Normal
0.0
221
Tumor
0.0
394
Normal
0.0
672
Normal
0.0
185
Tumor
0.0
665
Tumor
0.0
698
Normal
0.0
463
Tumor
0.0
112
Tumor
0.0
141
Tumor
0.0
493
Tumor
0.0
616
Normal
0.0
361
Tumor
0.0
983
Tumor
0.0
881
Tumor
0.0
524
Normal
0.0
456
Normal
0.0
981
Tumor
0.0
1014
Normal
0.0
213
Tumor
0.0
737
Tumor
0.0
944
Normal
0.0
615
Tumor
0.0
671
Tumor
0.0
534
Normal
0.0
533
Tumor
0.0
391
Tumor
0.0
525
Tumor
0.0
171
Tumor
0.0
482
Normal
0.0
396
Normal
0.0
1044
Normal
0.0
756
Normal
0.0
222
Normal
0.0
924
Normal
0.0
713
Tumor
0.0
268
Normal
0.0
663
Tumor
0.0
487
Tumor
0.0
212
Normal
0.0
641
Tumor
0.0
965
Tumor
0.0
964
Normal
0.0
867
Tumor
0.0
1028
Normal
0.0
313
Tumor
0.0
311
Tumor
0.0
873
Tumor
0.0
635
Tumor
-0.1
978
Normal
-0.1
217
Tumor
-0.1
386
Normal
-0.1
642
Normal
-0.1
357
Tumor
-0.1
516
Normal
-0.1
142
Normal
-0.1
341
Tumor
-0.1
383
Tumor
-0.1
364
Normal
-0.1
513
Tumor
-0.1
474
Normal
-0.1
968
Normal
-0.1
817
Tumor
-0.1
546
Normal
-0.1
368
Normal
-0.1
627
Tumor
-0.1
925
Tumor
-0.1
915
Tumor
-0.1
958
Normal
-0.1
478
Normal
-0.1
492
Normal
-0.1
483
Tumor
-0.1
1022
Normal
-0.1
874
Normal
-0.1
343
Tumor
-0.1
982
Normal
-0.1
937
Tumor
-0.1
755
Tumor
-0.1
1032
Normal
-0.1
363
Tumor
-0.1
883
Tumor
-0.1
966
Normal
-0.1
954
Normal
-0.1
921
Tumor
-0.1
916
Normal
-0.1
1042
Normal
-0.1
447
Tumor
-0.1
455
Tumor
-0.1
553
Tumor
-0.1
952
Normal
-0.1
695
Tumor
-0.1
538
Normal
-0.1
938
Normal
-0.1
957
Tumor
-0.1
416
Normal
-0.1
868
Normal
-0.1
976
Normal
-0.1
975
Tumor
-0.2
956
Normal
-0.2
741
Tumor
-0.2
161
Tumor
-0.2
472
Normal
-0.2
131
Tumor
-0.2
498
Normal
-0.2
1025
Tumor
-0.2
471
Tumor
-0.2
951
Tumor
-0.2
328
Normal
-0.2
953
Tumor
-0.2
123
Tumor
-0.2
943
Tumor
-0.2
785
Tumor
-0.2
283
Tumor
-0.2
857
Tumor
-0.2
192
Normal
-0.2
863
Tumor
-0.2
917
Tumor
-0.2
861
Tumor
-0.2
355
Tumor
-0.2
415
Tumor
-0.2
911
Tumor
-0.3
1031
Tumor
-0.3
125
Tumor
-0.3
554
Normal
-0.3
1043
Tumor
-0.3
977
Tumor
-0.3
473
Tumor
-0.3
1041
Tumor
-0.3
211
Tumor
-0.3
477
Tumor
-0.3
1045
Tumor
-0.3
963
Tumor
-0.4
877
Tumor
-0.4
536
Normal
-0.4
1013
Tumor
-0.4
535
Tumor
-0.4
491
Tumor
-0.5
697
Tumor
-0.5
823
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.