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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GTF3C2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
48.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
42.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
42.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
42.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
41.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
41.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
39.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
35.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
33.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
32.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
31.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
31.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
31.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
30.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
28.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
24.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
22.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
18.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
17.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
15.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GTF3C2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.6
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
31.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
28.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.1
743
Tumor
0.9
661
Tumor
0.8
427
Tumor
0.7
967
Tumor
0.7
131
Tumor
0.7
497
Tumor
0.7
413
Tumor
0.7
535
Tumor
0.7
425
Tumor
0.6
951
Tumor
0.6
447
Tumor
0.6
313
Tumor
0.6
367
Tumor
0.6
724
Normal
0.6
331
Tumor
0.5
983
Tumor
0.5
517
Tumor
0.5
943
Tumor
0.5
343
Tumor
0.5
385
Tumor
0.5
351
Tumor
0.5
391
Tumor
0.5
1021
Tumor
0.5
813
Tumor
0.5
665
Tumor
0.5
297
Tumor
0.4
877
Tumor
0.4
161
Tumor
0.4
917
Tumor
0.4
937
Tumor
0.4
777
Tumor
0.4
671
Tumor
0.4
467
Tumor
0.4
814
Normal
0.4
435
Tumor
0.4
881
Tumor
0.4
191
Tumor
0.4
285
Tumor
0.4
977
Tumor
0.3
817
Tumor
0.3
123
Tumor
0.3
957
Tumor
0.3
411
Tumor
0.3
571
Tumor
0.3
171
Tumor
0.3
342
Normal
0.3
741
Tumor
0.3
267
Tumor
0.3
358
Normal
0.3
125
Tumor
0.3
112
Tumor
0.3
865
Tumor
0.3
695
Tumor
0.3
911
Tumor
0.3
567
Tumor
0.3
465
Tumor
0.3
815
Tumor
0.3
423
Tumor
0.3
635
Tumor
0.3
393
Tumor
0.3
923
Tumor
0.3
573
Tumor
0.3
953
Tumor
0.3
221
Tumor
0.3
491
Tumor
0.3
873
Tumor
0.2
537
Tumor
0.2
647
Tumor
0.2
715
Tumor
0.2
463
Tumor
0.2
444
Normal
0.2
1013
Tumor
0.2
341
Tumor
0.2
428
Normal
0.2
232
Normal
0.2
395
Tumor
0.2
641
Tumor
0.2
445
Tumor
0.2
975
Tumor
0.2
663
Tumor
0.2
882
Normal
0.2
433
Tumor
0.2
388
Normal
0.2
431
Tumor
0.2
921
Tumor
0.2
357
Tumor
0.2
1031
Tumor
0.2
533
Tumor
0.2
487
Tumor
0.2
861
Tumor
0.2
387
Tumor
0.2
1045
Tumor
0.2
127
Tumor
0.2
344
Normal
0.2
697
Tumor
0.2
355
Tumor
0.2
354
Normal
0.1
785
Tumor
0.1
818
Normal
0.1
332
Normal
0.1
963
Tumor
0.1
883
Tumor
0.1
396
Normal
0.1
867
Tumor
0.1
311
Tumor
0.1
755
Tumor
0.1
727
Tumor
0.1
478
Normal
0.1
523
Tumor
0.1
426
Normal
0.1
744
Normal
0.1
195
Tumor
0.1
851
Tumor
0.1
277
Tumor
0.1
483
Tumor
0.1
211
Tumor
0.1
513
Tumor
0.1
737
Tumor
0.1
448
Normal
0.1
536
Normal
0.1
414
Normal
0.1
227
Tumor
0.1
742
Normal
0.1
884
Normal
0.1
863
Tumor
0.1
364
Normal
0.1
461
Tumor
0.1
271
Tumor
0.1
473
Tumor
0.1
328
Normal
0.1
231
Tumor
0.1
545
Tumor
0.1
213
Tumor
0.1
424
Normal
0.1
145
Tumor
0.1
314
Normal
0.1
721
Tumor
0.1
493
Tumor
0.1
217
Tumor
0.0
141
Tumor
0.0
352
Normal
0.0
874
Normal
0.0
258
Normal
0.0
723
Tumor
0.0
113
Tumor
0.0
912
Normal
0.0
443
Tumor
0.0
857
Tumor
0.0
672
Normal
0.0
1015
Tumor
0.0
356
Normal
0.0
192
Normal
0.0
353
Tumor
0.0
394
Normal
0.0
146
Normal
0.0
778
Normal
0.0
858
Normal
0.0
824
Normal
0.0
392
Normal
0.0
278
Normal
0.0
422
Normal
0.0
455
Tumor
0.0
434
Normal
0.0
685
Tumor
0.0
738
Normal
0.0
111
Normal
0.0
464
Normal
0.0
563
Tumor
0.0
515
Tumor
0.0
878
Normal
0.0
421
Tumor
0.0
498
Normal
0.0
615
Tumor
0.0
574
Normal
0.0
981
Tumor
0.0
383
Tumor
0.0
386
Normal
0.0
1043
Tumor
0.0
913
Tumor
0.0
756
Normal
0.0
525
Tumor
0.0
492
Normal
0.0
135
Tumor
0.0
298
Normal
0.0
132
Normal
0.0
1046
Normal
-0.1
471
Tumor
-0.1
1044
Normal
-0.1
553
Tumor
-0.1
714
Normal
-0.1
728
Normal
-0.1
412
Normal
-0.1
361
Tumor
-0.1
713
Tumor
-0.1
283
Tumor
-0.1
185
Tumor
-0.1
514
Normal
-0.1
272
Normal
-0.1
666
Normal
-0.1
363
Tumor
-0.1
914
Normal
-0.1
618
Normal
-0.1
261
Tumor
-0.1
477
Tumor
-0.1
375
Tumor
-0.1
976
Normal
-0.1
648
Normal
-0.1
218
Normal
-0.1
984
Normal
-0.1
1016
Normal
-0.1
572
Normal
-0.1
964
Normal
-0.1
416
Normal
-0.1
958
Normal
-0.1
312
Normal
-0.1
222
Normal
-0.1
696
Normal
-0.1
746
Normal
-0.1
954
Normal
-0.1
628
Normal
-0.1
534
Normal
-0.1
568
Normal
-0.1
868
Normal
-0.1
128
Normal
-0.1
862
Normal
-0.1
662
Normal
-0.1
474
Normal
-0.1
636
Normal
-0.1
664
Normal
-0.1
262
Normal
-0.1
558
Normal
-0.1
538
Normal
-0.1
915
Tumor
-0.1
866
Normal
-0.1
852
Normal
-0.1
365
Tumor
-0.1
686
Normal
-0.1
968
Normal
-0.1
642
Normal
-0.1
196
Normal
-0.1
446
Normal
-0.1
786
Normal
-0.1
516
Normal
-0.1
136
Normal
-0.1
564
Normal
-0.1
916
Normal
-0.1
616
Normal
-0.1
488
Normal
-0.1
978
Normal
-0.1
187
Tumor
-0.1
966
Normal
-0.1
214
Normal
-0.1
944
Normal
-0.1
816
Normal
-0.2
257
Tumor
-0.2
524
Normal
-0.2
698
Normal
-0.2
472
Normal
-0.2
452
Normal
-0.2
124
Normal
-0.2
147
Tumor
-0.2
432
Normal
-0.2
114
Normal
-0.2
627
Tumor
-0.2
1041
Tumor
-0.2
384
Normal
-0.2
925
Tumor
-0.2
138
Normal
-0.2
376
Normal
-0.2
924
Normal
-0.2
142
Normal
-0.2
366
Normal
-0.2
451
Tumor
-0.2
722
Normal
-0.2
716
Normal
-0.2
528
Normal
-0.2
268
Normal
-0.2
527
Tumor
-0.2
823
Tumor
-0.2
224
Normal
-0.2
1014
Normal
-0.2
938
Normal
-0.2
228
Normal
-0.2
484
Normal
-0.2
546
Normal
-0.2
368
Normal
-0.2
466
Normal
-0.2
415
Tumor
-0.2
482
Normal
-0.2
557
Tumor
-0.2
617
Tumor
-0.2
1026
Normal
-0.2
1025
Tumor
-0.2
481
Tumor
-0.2
126
Normal
-0.2
955
Tumor
-0.2
456
Normal
-0.2
864
Normal
-0.2
982
Normal
-0.2
526
Normal
-0.2
362
Normal
-0.2
956
Normal
-0.2
952
Normal
-0.2
223
Tumor
-0.2
554
Normal
-0.2
284
Normal
-0.3
286
Normal
-0.3
186
Normal
-0.3
494
Normal
-0.3
327
Tumor
-0.3
436
Normal
-0.3
918
Normal
-0.3
148
Normal
-0.3
162
Normal
-0.3
926
Normal
-0.3
468
Normal
-0.3
188
Normal
-0.3
518
Normal
-0.3
1028
Normal
-0.3
1032
Normal
-0.3
1022
Normal
-0.3
462
Normal
-0.3
922
Normal
-0.4
1042
Normal
-0.4
137
Tumor
-0.4
212
Normal
-0.4
745
Tumor
-0.5
172
Normal
-0.5
1027
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
