MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.8 nTPM
HPA Brain:33.8 nTPM
GTEx:8.8 nTPM
FANTOM5:15.4 Scaled Tags Per Million
Pig:81.3 nTPM
Mouse:34.8 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 33.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.1
2586 Male, age 75, left hemisphere 27.0
2411 Female, age 72, unknown 26.0
1870 Female, age 42, unknown 25.7
1827 Male, age 72, unknown 25.3
1833 Male, age 53, unknown 24.6
2828 Female, age 72, unknown 23.7
2219 Male, age 76, both hemispheres 23.3
1830 Male, age 51, unknown 21.1
2666 Male, age 74, left hemisphere 20.3
2019 Male, age 18, unknown 14.0
Dorsal raphe nucleus
nTPM: 29.8
2047 Male, age 72, unknown 35.0
2298 Female, age 72, unknown 30.3
1828 Male, age 53, unknown 29.9
2016 Female, age 72, unknown 28.6
2750 Male, age 76, both hemispheres 25.0
Inferior colliculus
nTPM: 33.8
2097 Female, age 72, unknown 37.9
1890 Male, age 53, unknown 34.1
2849 Male, age 72, unknown 31.9
1848 Female, age 42, unknown 31.4
Median raphe nucleus
nTPM: 25.2
2220 Male, age 76, midline 25.2
Periaquaductal grey, anterior
nTPM: 21.4
1947 Male, age 18, unknown 25.8
1795 Male, age 51, unknown 20.1
2502 Female, age 75, unknown 18.1
Periaquaductal grey, dorsal
nTPM: 26.7
1840 Male, age 53, unknown 32.5
2464 Female, age 72, unknown 27.0
2850 Male, age 76, both hemispheres 25.5
1831 Male, age 72, unknown 21.7
Periaquaductal grey, lateral
nTPM: 23.7
2053 Male, age 18, unknown 28.2
2140 Male, age 76, both hemispheres 23.4
2272 Male, age 74, both hemispheres 19.4
Pretectal area
nTPM: 22.5
2825 Male, age 18, unknown 31.6
2224 Female, age 72, unknown 27.8
1817 Female, age 42, unknown 24.1
1944 Female, age 72, unknown 22.7
2273 Male, age 74, both hemispheres 22.3
2667 Female, age 75, unknown 21.4
1816 Male, age 51, unknown 21.3
2316 Male, age 76, right hemisphere 20.7
2007 Male, age 72, unknown 18.8
1815 Male, age 53, unknown 18.2
2407 Male, age 75, both hemispheres 18.2
Red nucleus
nTPM: 23.6
1821 Female, age 72, unknown 28.8
2725 Female, age 75, unknown 28.6
2503 Female, age 72, unknown 28.1
2823 Male, age 76, right hemisphere 25.0
2769 Male, age 72, unknown 24.5
1954 Female, age 42, unknown 23.7
2227 Male, age 72, unknown 23.6
1865 Male, age 51, unknown 23.5
1904 Male, age 53, unknown 22.4
2588 Male, age 74, left hemisphere 22.1
2584 Male, age 75, left hemisphere 19.0
2785 Male, age 18, unknown 14.0
Substantia nigra
nTPM: 28.3
1916 Female, age 42, unknown 35.3
2699 Male, age 18, unknown 33.7
2241 Male, age 72, unknown 33.2
1851 Male, age 51, unknown 28.5
2665 Male, age 74, both hemispheres 27.8
1889 Female, age 72, unknown 27.2
1941 Male, age 53, unknown 24.5
2583 Male, age 75, right hemisphere 24.4
2409 Female, age 72, unknown 24.3
2590 Female, age 75, unknown 24.2
Superior colliculus
nTPM: 22.0
1839 Male, age 51, unknown 25.0
2668 Female, age 75, unknown 24.8
1895 Male, age 76, right hemisphere 24.2
1796 Male, age 53, unknown 23.2
2261 Male, age 18, unknown 23.1
2587 Male, age 74, left hemisphere 22.7
2087 Female, age 72, unknown 21.2
1995 Male, age 72, unknown 19.8
2664 Male, age 75, both hemispheres 18.4
1913 Female, age 42, unknown 18.0
Ventral tegmental area
nTPM: 27.0
2410 Female, age 72, unknown 28.6
1915 Female, age 42, unknown 28.5
1942 Male, age 51, unknown 27.2
2021 Male, age 53, unknown 27.2
2223 Female, age 72, unknown 26.9
2218 Male, age 76, both hemispheres 23.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.8
Samples: 139

Max nTPM: 19.4
Min nTPM: 4.5
Std nTPM: 2.5
Median nTPM: 8.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 19.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 19.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 18.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 14.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 14.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 13.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 13.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 13.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 13.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 13.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 12.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 15.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.4
FF:10158-103A5 76 years, female 15.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 81.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 70.2
Samples: 4

Max nTPM: 74.3
Min nTPM: 60.2
Sample A Female 74.3
Sample B Female 60.2
Sample C Male 72.7
Sample D Male 73.6
Midbrain
nTPM: 81.3
Samples: 4

Max nTPM: 93.8
Min nTPM: 55.6
Sample A Female 93.8
Sample B Female 85.4
Sample C Male 90.3
Sample D Male 55.6
Periaqueductal gray
nTPM: 70.9
Samples: 3

Max nTPM: 83.7
Min nTPM: 62.8
Sample B Female 83.7
Sample C Male 66.3
Sample D Male 62.8
Superior colliculi
nTPM: 63.9
Samples: 4

Max nTPM: 79.5
Min nTPM: 44.4
Sample A Female 61.3
Sample B Female 44.4
Sample C Male 79.5
Sample D Male 70.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 34.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.8
Samples: 4

Max nTPM: 36.0
Min nTPM: 32.6
Sample A Male 32.6
Sample B Male 35.6
Sample C Female 34.8
Sample D Female 36.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
70615598 Antisense, RP_050725_01_D06, Mouse strain C57BL/6J (56 days, male) 1.8
75749419 Antisense, RP_060518_04_E03, Mouse strain C57BL/6J (56 days, male) 1.1

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