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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SSR3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
75.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
286.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
255.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
247.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
217.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
190.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
188.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
183.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
178.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
164.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
163.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
160.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
150.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
148.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
145.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
141.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
141.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
140.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
140.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
139.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
139.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
136.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
133.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
132.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
131.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
130.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
130.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
128.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
127.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
126.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
126.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
124.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
124.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
121.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
120.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
120.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
118.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
118.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
117.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
116.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
115.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
114.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
114.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
113.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
113.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
111.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
111.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
110.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
110.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
108.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
108.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
108.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
107.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
107.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
106.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
106.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
106.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
105.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
105.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
104.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
104.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
104.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
103.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
103.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
102.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
101.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
101.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
101.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
101.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
100.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
100.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
99.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
99.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
99.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
99.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
98.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
98.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
97.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
96.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
95.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
94.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
94.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
94.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
94.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
94.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
94.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
94.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
93.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
93.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
93.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
93.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
93.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
93.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
93.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
93.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
93.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
92.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
92.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
92.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
91.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
91.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
91.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
91.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
90.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
90.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
89.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
89.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
88.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
88.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
87.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
87.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
87.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
87.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
87.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
87.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
87.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
86.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
86.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
86.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
86.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
86.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
86.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
86.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
85.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
85.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
85.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
85.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
85.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
85.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
84.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
83.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
83.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
83.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
83.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
83.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
83.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
83.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
82.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
82.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
82.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
81.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
81.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
81.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
81.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
81.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
80.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
80.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
79.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
79.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
79.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
79.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
78.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
78.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
78.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
78.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
77.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
77.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
77.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
77.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
76.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
76.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
76.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
76.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
76.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
76.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
76.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
75.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
75.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
74.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
74.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
74.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
74.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
73.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
73.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
73.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
73.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
73.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
72.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
72.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
72.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
72.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
71.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
71.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
71.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
70.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
70.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
69.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
69.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
69.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
68.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
68.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
68.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
68.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
67.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
67.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
67.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
67.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
67.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
67.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
67.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
67.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
66.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
66.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
66.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
66.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
66.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
66.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
66.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
65.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
65.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
65.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
65.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
64.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
64.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
64.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
64.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
64.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
64.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
64.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
64.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
63.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
63.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
63.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
63.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
62.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
62.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
61.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
61.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
61.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
60.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
60.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
60.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
60.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
59.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
59.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
59.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
59.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
59.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
59.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
58.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
58.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
57.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
57.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
56.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
56.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
56.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
56.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
56.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
55.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
55.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
54.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
54.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
54.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
54.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
54.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
53.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
53.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
53.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
53.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
53.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
52.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
52.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
52.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
51.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
51.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
51.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
51.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
51.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
51.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
50.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
50.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
50.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
50.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
50.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
50.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
49.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
49.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
49.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
49.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
49.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
49.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
48.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
48.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
48.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
48.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
47.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
47.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
46.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
45.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
45.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
45.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
45.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
45.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
44.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
44.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
44.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
44.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
44.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
43.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
43.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
43.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
42.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
42.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
42.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
42.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
41.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
41.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
41.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
40.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
40.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
40.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
40.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
39.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
39.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
39.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
39.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
39.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
38.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
38.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
38.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
38.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
38.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
37.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
37.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
37.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
36.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
36.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
35.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
34.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
34.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
33.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
33.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
32.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
31.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
31.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
31.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
30.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
30.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
30.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
29.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
29.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
28.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
28.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
28.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
27.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
26.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
26.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
26.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
25.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
23.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
23.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
23.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
15.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SSR3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.2
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
96.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
94.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
83.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
81.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
76.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
76.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
76.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
76.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
73.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
72.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
71.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
68.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
68.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
68.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
66.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
66.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
65.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
64.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
64.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
64.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
64.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
62.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
62.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
62.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
61.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
61.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
60.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
60.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
59.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
58.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
58.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
57.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
57.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
57.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
56.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
56.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
55.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
55.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
55.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
55.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
54.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
53.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
53.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
53.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
53.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
52.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
52.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
50.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
50.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
50.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
50.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
49.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
49.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
49.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
49.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
49.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
49.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
49.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
48.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
48.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
48.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
48.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
47.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
47.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
47.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
47.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
47.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
47.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
46.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
46.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
46.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
46.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
46.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
46.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
46.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
46.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
45.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
45.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
45.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
45.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
45.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
45.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
44.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
44.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
44.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
43.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
43.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
43.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
43.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
43.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
43.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
43.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
43.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
42.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
42.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
42.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
42.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
42.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
42.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
41.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
41.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
41.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
41.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
40.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
40.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
40.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
40.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
40.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
40.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
40.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
40.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
39.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
39.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
39.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
38.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
38.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
38.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
38.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
38.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
38.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
38.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
38.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
37.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
37.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
37.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
37.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
37.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
36.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
36.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
36.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
36.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
36.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
36.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
36.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
36.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
36.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
36.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
35.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
35.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
35.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
35.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
35.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
35.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
34.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
34.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
34.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
34.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
34.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
34.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
34.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
34.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
33.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
33.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
33.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
33.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
32.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
32.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
32.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
32.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
32.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
32.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
32.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
31.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
31.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
31.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
31.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
31.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
31.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
31.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
30.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
30.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
30.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
30.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
29.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
29.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
29.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
29.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
28.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
28.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
28.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
28.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
28.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
28.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
27.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
27.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
27.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
27.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
26.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
26.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
26.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
26.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
25.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
25.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
23.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
22.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
21.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1025
Tumor
1.2
223
Tumor
0.8
497
Tumor
0.8
937
Tumor
0.8
571
Tumor
0.6
557
Tumor
0.6
745
Tumor
0.5
467
Tumor
0.5
743
Tumor
0.5
983
Tumor
0.5
1021
Tumor
0.5
823
Tumor
0.5
817
Tumor
0.5
135
Tumor
0.5
327
Tumor
0.4
617
Tumor
0.4
877
Tumor
0.4
912
Normal
0.4
951
Tumor
0.4
955
Tumor
0.4
285
Tumor
0.4
363
Tumor
0.4
713
Tumor
0.4
636
Normal
0.3
286
Normal
0.3
815
Tumor
0.3
721
Tumor
0.3
421
Tumor
0.3
923
Tumor
0.3
112
Tumor
0.3
558
Normal
0.3
1042
Normal
0.3
965
Tumor
0.3
113
Tumor
0.3
481
Tumor
0.3
857
Tumor
0.3
865
Tumor
0.3
964
Normal
0.3
1041
Tumor
0.3
515
Tumor
0.3
383
Tumor
0.3
494
Normal
0.3
523
Tumor
0.3
851
Tumor
0.3
425
Tumor
0.3
212
Normal
0.3
786
Normal
0.3
958
Normal
0.3
981
Tumor
0.3
277
Tumor
0.3
813
Tumor
0.3
427
Tumor
0.3
228
Normal
0.3
756
Normal
0.3
1015
Tumor
0.3
873
Tumor
0.3
527
Tumor
0.3
1026
Normal
0.2
926
Normal
0.2
628
Normal
0.2
517
Tumor
0.2
393
Tumor
0.2
724
Normal
0.2
918
Normal
0.2
864
Normal
0.2
616
Normal
0.2
647
Tumor
0.2
814
Normal
0.2
514
Normal
0.2
884
Normal
0.2
685
Tumor
0.2
777
Tumor
0.2
914
Normal
0.2
462
Normal
0.2
568
Normal
0.2
526
Normal
0.2
414
Normal
0.2
696
Normal
0.2
145
Tumor
0.2
868
Normal
0.2
824
Normal
0.2
443
Tumor
0.2
448
Normal
0.2
395
Tumor
0.2
221
Tumor
0.2
573
Tumor
0.2
968
Normal
0.2
331
Tumor
0.2
975
Tumor
0.2
572
Normal
0.2
131
Tumor
0.2
422
Normal
0.2
385
Tumor
0.2
416
Normal
0.2
518
Normal
0.2
982
Normal
0.2
451
Tumor
0.2
1043
Tumor
0.2
952
Normal
0.2
1032
Normal
0.2
142
Normal
0.2
528
Normal
0.2
474
Normal
0.2
728
Normal
0.2
217
Tumor
0.2
367
Tumor
0.2
492
Normal
0.2
852
Normal
0.2
863
Tumor
0.2
426
Normal
0.2
642
Normal
0.2
746
Normal
0.2
487
Tumor
0.2
1022
Normal
0.2
1046
Normal
0.2
472
Normal
0.2
353
Tumor
0.2
412
Normal
0.2
171
Tumor
0.2
697
Tumor
0.2
723
Tumor
0.2
355
Tumor
0.2
862
Normal
0.2
665
Tumor
0.1
944
Normal
0.1
1014
Normal
0.1
284
Normal
0.1
922
Normal
0.1
664
Normal
0.1
545
Tumor
0.1
368
Normal
0.1
553
Tumor
0.1
376
Normal
0.1
883
Tumor
0.1
482
Normal
0.1
392
Normal
0.1
913
Tumor
0.1
413
Tumor
0.1
564
Normal
0.1
925
Tumor
0.1
858
Normal
0.1
524
Normal
0.1
356
Normal
0.1
635
Tumor
0.1
672
Normal
0.1
618
Normal
0.1
1016
Normal
0.1
785
Tumor
0.1
436
Normal
0.1
686
Normal
0.1
358
Normal
0.1
737
Tumor
0.1
314
Normal
0.1
232
Normal
0.1
882
Normal
0.1
917
Tumor
0.1
488
Normal
0.1
478
Normal
0.1
966
Normal
0.1
214
Normal
0.1
1028
Normal
0.1
364
Normal
0.1
111
Normal
0.1
387
Tumor
0.1
563
Tumor
0.1
648
Normal
0.1
1027
Tumor
0.1
471
Tumor
0.1
466
Normal
0.1
211
Tumor
0.1
384
Normal
0.1
662
Normal
0.1
224
Normal
0.1
1044
Normal
0.1
921
Tumor
0.1
424
Normal
0.1
428
Normal
0.1
738
Normal
0.1
1031
Tumor
0.1
328
Normal
0.1
535
Tumor
0.1
924
Normal
0.1
433
Tumor
0.1
978
Normal
0.1
574
Normal
0.1
963
Tumor
0.1
484
Normal
0.1
227
Tumor
0.1
984
Normal
0.1
722
Normal
0.1
187
Tumor
0.1
938
Normal
0.1
461
Tumor
0.1
468
Normal
0.1
431
Tumor
0.1
663
Tumor
0.1
615
Tumor
0.1
778
Normal
0.1
977
Tumor
0.0
473
Tumor
0.0
715
Tumor
0.0
222
Normal
0.0
262
Normal
0.0
132
Normal
0.0
666
Normal
0.0
191
Tumor
0.0
362
Normal
0.0
186
Normal
0.0
916
Normal
0.0
147
Tumor
0.0
452
Normal
0.0
161
Tumor
0.0
742
Normal
0.0
446
Normal
0.0
1045
Tumor
0.0
218
Normal
0.0
695
Tumor
0.0
432
Normal
0.0
976
Normal
0.0
278
Normal
0.0
493
Tumor
0.0
136
Normal
0.0
956
Normal
0.0
477
Tumor
0.0
396
Normal
0.0
816
Normal
0.0
196
Normal
0.0
388
Normal
0.0
661
Tumor
0.0
231
Tumor
0.0
298
Normal
0.0
513
Tumor
0.0
463
Tumor
0.0
818
Normal
0.0
352
Normal
0.0
258
Normal
0.0
498
Normal
0.0
567
Tumor
0.0
271
Tumor
0.0
423
Tumor
0.0
727
Tumor
0.0
954
Normal
0.0
878
Normal
0.0
411
Tumor
0.0
525
Tumor
0.0
671
Tumor
0.0
516
Normal
0.0
483
Tumor
0.0
434
Normal
0.0
554
Normal
0.0
464
Normal
0.0
456
Normal
0.0
967
Tumor
0.0
172
Normal
0.0
755
Tumor
0.0
415
Tumor
0.0
866
Normal
0.0
546
Normal
-0.1
312
Normal
-0.1
343
Tumor
-0.1
114
Normal
-0.1
716
Normal
-0.1
445
Tumor
-0.1
714
Normal
-0.1
861
Tumor
-0.1
148
Normal
-0.1
162
Normal
-0.1
641
Tumor
-0.1
272
Normal
-0.1
195
Tumor
-0.1
341
Tumor
-0.1
332
Normal
-0.1
127
Tumor
-0.1
188
Normal
-0.1
146
Normal
-0.1
386
Normal
-0.1
128
Normal
-0.1
881
Tumor
-0.1
138
Normal
-0.1
394
Normal
-0.1
444
Normal
-0.1
257
Tumor
-0.1
943
Tumor
-0.1
137
Tumor
-0.1
953
Tumor
-0.1
534
Normal
-0.1
283
Tumor
-0.1
465
Tumor
-0.1
351
Tumor
-0.1
491
Tumor
-0.1
268
Normal
-0.1
874
Normal
-0.1
698
Normal
-0.1
536
Normal
-0.1
267
Tumor
-0.1
366
Normal
-0.2
537
Tumor
-0.2
213
Tumor
-0.2
185
Tumor
-0.2
375
Tumor
-0.2
915
Tumor
-0.2
447
Tumor
-0.2
141
Tumor
-0.2
124
Normal
-0.2
354
Normal
-0.2
957
Tumor
-0.2
455
Tumor
-0.2
344
Normal
-0.2
357
Tumor
-0.2
538
Normal
-0.2
126
Normal
-0.2
261
Tumor
-0.2
297
Tumor
-0.2
192
Normal
-0.3
311
Tumor
-0.3
435
Tumor
-0.3
533
Tumor
-0.3
313
Tumor
-0.3
342
Normal
-0.3
361
Tumor
-0.3
627
Tumor
-0.3
1013
Tumor
-0.3
123
Tumor
-0.3
744
Normal
-0.3
911
Tumor
-0.4
365
Tumor
-0.4
867
Tumor
-0.4
125
Tumor
-0.4
391
Tumor
-0.4
741
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
