MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.8 nTPM
HPA Brain:28.4 nTPM
GTEx:6.8 nTPM
FANTOM5:9.4 Scaled Tags Per Million
Pig:7.4 nTPM
Mouse:0.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 28.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.8
1827 Male, age 72, unknown 11.1
2828 Female, age 72, unknown 10.1
1833 Male, age 53, unknown 8.3
2019 Male, age 18, unknown 8.1
1870 Female, age 42, unknown 8.0
1830 Male, age 51, unknown 7.2
2411 Female, age 72, unknown 7.1
2666 Male, age 74, left hemisphere 6.9
2586 Male, age 75, left hemisphere 5.9
2219 Male, age 76, both hemispheres 5.4
Dorsal raphe nucleus
nTPM: 18.9
2298 Female, age 72, unknown 31.0
2016 Female, age 72, unknown 27.3
1828 Male, age 53, unknown 17.8
2047 Male, age 72, unknown 10.5
2750 Male, age 76, both hemispheres 7.8
Inferior colliculus
nTPM: 8.5
2849 Male, age 72, unknown 9.9
2097 Female, age 72, unknown 9.2
1890 Male, age 53, unknown 7.8
1848 Female, age 42, unknown 7.2
Median raphe nucleus
nTPM: 8.4
2220 Male, age 76, midline 8.4
Periaquaductal grey, anterior
nTPM: 12.8
1795 Male, age 51, unknown 19.1
1947 Male, age 18, unknown 10.1
2502 Female, age 75, unknown 9.3
Periaquaductal grey, dorsal
nTPM: 23.3
2850 Male, age 76, both hemispheres 38.3
1840 Male, age 53, unknown 25.5
1831 Male, age 72, unknown 15.8
2464 Female, age 72, unknown 13.7
Periaquaductal grey, lateral
nTPM: 28.4
2272 Male, age 74, both hemispheres 38.0
2140 Male, age 76, both hemispheres 31.0
2053 Male, age 18, unknown 16.1
Pretectal area
nTPM: 12.9
2273 Male, age 74, both hemispheres 41.8
2224 Female, age 72, unknown 19.6
2825 Male, age 18, unknown 10.9
2667 Female, age 75, unknown 10.3
1816 Male, age 51, unknown 9.9
2407 Male, age 75, both hemispheres 9.8
2316 Male, age 76, right hemisphere 9.4
1944 Female, age 72, unknown 8.9
1815 Male, age 53, unknown 7.5
2007 Male, age 72, unknown 7.0
1817 Female, age 42, unknown 6.8
Red nucleus
nTPM: 7.5
2725 Female, age 75, unknown 10.2
2785 Male, age 18, unknown 8.4
1821 Female, age 72, unknown 7.9
1954 Female, age 42, unknown 7.9
1904 Male, age 53, unknown 7.8
2503 Female, age 72, unknown 7.7
2227 Male, age 72, unknown 7.3
2769 Male, age 72, unknown 7.2
1865 Male, age 51, unknown 6.9
2584 Male, age 75, left hemisphere 6.8
2823 Male, age 76, right hemisphere 6.5
2588 Male, age 74, left hemisphere 5.7
Substantia nigra
nTPM: 9.1
2699 Male, age 18, unknown 12.2
2590 Female, age 75, unknown 12.0
2241 Male, age 72, unknown 10.3
1851 Male, age 51, unknown 9.3
2409 Female, age 72, unknown 9.3
1916 Female, age 42, unknown 8.3
2583 Male, age 75, right hemisphere 8.0
1941 Male, age 53, unknown 7.4
1889 Female, age 72, unknown 7.2
2665 Male, age 74, both hemispheres 6.9
Superior colliculus
nTPM: 11.6
1995 Male, age 72, unknown 20.5
2587 Male, age 74, left hemisphere 16.5
2261 Male, age 18, unknown 14.0
1913 Female, age 42, unknown 11.1
2664 Male, age 75, both hemispheres 10.7
1796 Male, age 53, unknown 9.8
1839 Male, age 51, unknown 9.0
2087 Female, age 72, unknown 9.0
2668 Female, age 75, unknown 8.4
1895 Male, age 76, right hemisphere 6.5
Ventral tegmental area
nTPM: 9.4
2021 Male, age 53, unknown 13.6
1915 Female, age 42, unknown 10.6
2218 Male, age 76, both hemispheres 8.8
1942 Male, age 51, unknown 8.7
2223 Female, age 72, unknown 7.4
2410 Female, age 72, unknown 7.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 6.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.8
Samples: 139

Max nTPM: 39.5
Min nTPM: 1.5
Std nTPM: 3.8
Median nTPM: 6.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 39.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 16.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 14.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 13.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 13.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 13.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 13.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 12.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 11.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 11.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 10.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 9.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.4
FF:10158-103A5 76 years, female 9.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 7.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.8
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.5
Sample A Female 3.1
Sample B Female 2.7
Sample C Male 2.5
Sample D Male 3.0
Midbrain
nTPM: 3.4
Samples: 4

Max nTPM: 4.9
Min nTPM: 2.4
Sample A Female 4.9
Sample B Female 3.3
Sample C Male 2.8
Sample D Male 2.4
Periaqueductal gray
nTPM: 7.4
Samples: 3

Max nTPM: 8.1
Min nTPM: 6.0
Sample B Female 6.0
Sample C Male 8.0
Sample D Male 8.1
Superior colliculi
nTPM: 3.1
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.3
Sample A Female 2.9
Sample B Female 3.8
Sample C Male 3.2
Sample D Male 2.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.7
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.6
Sample A Male 0.7
Sample B Male 0.7
Sample C Female 0.6
Sample D Female 0.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69782180 Antisense, RP_050505_02_E02, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org