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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNX4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
45.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
45.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
40.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
37.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
37.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
36.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
36.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
34.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
33.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
31.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
31.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
29.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
28.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
27.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
27.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
27.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
26.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
26.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
26.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
25.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
25.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
24.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
24.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
24.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
24.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
23.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
23.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
23.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
23.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
21.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
19.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
19.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
17.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNX4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.8
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
52.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
40.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
37.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
35.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
35.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
35.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
34.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
33.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
32.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
32.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
31.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
30.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
30.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
29.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
29.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
29.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
29.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
29.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
29.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
28.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
28.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
27.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
27.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
26.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
26.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
26.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
26.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
26.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
26.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
25.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
24.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
24.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
24.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
23.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
23.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
23.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
23.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
22.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
22.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
22.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
21.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
20.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
18.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
147
Tumor
1.1
517
Tumor
1.0
537
Tumor
1.0
851
Tumor
0.9
125
Tumor
0.8
435
Tumor
0.8
745
Tumor
0.8
411
Tumor
0.7
463
Tumor
0.7
727
Tumor
0.7
1013
Tumor
0.7
425
Tumor
0.7
957
Tumor
0.7
1027
Tumor
0.6
647
Tumor
0.6
413
Tumor
0.6
387
Tumor
0.6
953
Tumor
0.6
131
Tumor
0.6
981
Tumor
0.6
737
Tumor
0.5
271
Tumor
0.5
545
Tumor
0.5
137
Tumor
0.5
393
Tumor
0.5
925
Tumor
0.4
617
Tumor
0.4
341
Tumor
0.4
863
Tumor
0.4
741
Tumor
0.4
127
Tumor
0.4
567
Tumor
0.4
145
Tumor
0.4
113
Tumor
0.4
375
Tumor
0.4
313
Tumor
0.4
257
Tumor
0.4
327
Tumor
0.4
1025
Tumor
0.4
951
Tumor
0.4
865
Tumor
0.4
363
Tumor
0.3
285
Tumor
0.3
663
Tumor
0.3
913
Tumor
0.3
873
Tumor
0.3
883
Tumor
0.3
277
Tumor
0.3
391
Tumor
0.3
665
Tumor
0.3
695
Tumor
0.3
161
Tumor
0.3
533
Tumor
0.3
923
Tumor
0.3
477
Tumor
0.3
627
Tumor
0.3
365
Tumor
0.2
1031
Tumor
0.2
171
Tumor
0.2
1045
Tumor
0.2
421
Tumor
0.2
937
Tumor
0.2
921
Tumor
0.2
1043
Tumor
0.2
191
Tumor
0.2
283
Tumor
0.2
724
Normal
0.2
351
Tumor
0.2
817
Tumor
0.2
965
Tumor
0.2
963
Tumor
0.2
367
Tumor
0.2
525
Tumor
0.2
943
Tumor
0.2
715
Tumor
0.2
967
Tumor
0.2
395
Tumor
0.2
573
Tumor
0.2
227
Tumor
0.1
431
Tumor
0.1
123
Tumor
0.1
231
Tumor
0.1
361
Tumor
0.1
615
Tumor
0.1
465
Tumor
0.1
1021
Tumor
0.1
755
Tumor
0.1
497
Tumor
0.1
1015
Tumor
0.1
467
Tumor
0.1
443
Tumor
0.1
311
Tumor
0.1
415
Tumor
0.1
815
Tumor
0.1
563
Tumor
0.1
523
Tumor
0.1
983
Tumor
0.1
297
Tumor
0.1
641
Tumor
0.1
916
Normal
0.1
451
Tumor
0.1
984
Normal
0.1
777
Tumor
0.1
955
Tumor
0.1
911
Tumor
0.1
135
Tumor
0.1
917
Tumor
0.1
278
Normal
0.1
968
Normal
0.1
353
Tumor
0.1
355
Tumor
0.1
312
Normal
0.1
416
Normal
0.1
471
Tumor
0.0
918
Normal
0.0
538
Normal
0.0
557
Tumor
0.0
852
Normal
0.0
1041
Tumor
0.0
1028
Normal
0.0
185
Tumor
0.0
778
Normal
0.0
328
Normal
0.0
447
Tumor
0.0
558
Normal
0.0
526
Normal
0.0
187
Tumor
0.0
958
Normal
0.0
112
Tumor
0.0
111
Normal
0.0
686
Normal
0.0
1014
Normal
0.0
114
Normal
0.0
572
Normal
0.0
455
Tumor
0.0
364
Normal
0.0
445
Tumor
0.0
528
Normal
0.0
356
Normal
0.0
427
Tumor
0.0
982
Normal
0.0
728
Normal
0.0
536
Normal
0.0
487
Tumor
0.0
716
Normal
0.0
553
Tumor
0.0
884
Normal
0.0
571
Tumor
0.0
1016
Normal
0.0
124
Normal
0.0
713
Tumor
0.0
423
Tumor
0.0
314
Normal
0.0
877
Tumor
0.0
661
Tumor
0.0
912
Normal
0.0
978
Normal
0.0
514
Normal
0.0
491
Tumor
0.0
666
Normal
0.0
1022
Normal
0.0
286
Normal
0.0
444
Normal
0.0
964
Normal
0.0
461
Tumor
0.0
1046
Normal
0.0
224
Normal
0.0
267
Tumor
0.0
814
Normal
-0.1
436
Normal
-0.1
432
Normal
-0.1
331
Tumor
-0.1
468
Normal
-0.1
926
Normal
-0.1
664
Normal
-0.1
412
Normal
-0.1
1044
Normal
-0.1
1032
Normal
-0.1
298
Normal
-0.1
866
Normal
-0.1
868
Normal
-0.1
642
Normal
-0.1
136
Normal
-0.1
952
Normal
-0.1
743
Tumor
-0.1
126
Normal
-0.1
132
Normal
-0.1
618
Normal
-0.1
426
Normal
-0.1
616
Normal
-0.1
944
Normal
-0.1
258
Normal
-0.1
456
Normal
-0.1
428
Normal
-0.1
685
Tumor
-0.1
332
Normal
-0.1
396
Normal
-0.1
212
Normal
-0.1
554
Normal
-0.1
746
Normal
-0.1
464
Normal
-0.1
228
Normal
-0.1
864
Normal
-0.1
813
Tumor
-0.1
818
Normal
-0.1
976
Normal
-0.1
146
Normal
-0.1
268
Normal
-0.1
462
Normal
-0.1
352
Normal
-0.1
148
Normal
-0.1
474
Normal
-0.1
564
Normal
-0.1
714
Normal
-0.1
858
Normal
-0.1
492
Normal
-0.1
881
Tumor
-0.1
1042
Normal
-0.1
824
Normal
-0.1
1026
Normal
-0.1
742
Normal
-0.1
954
Normal
-0.1
574
Normal
-0.1
648
Normal
-0.1
448
Normal
-0.1
218
Normal
-0.1
186
Normal
-0.1
376
Normal
-0.1
786
Normal
-0.1
723
Tumor
-0.1
446
Normal
-0.1
188
Normal
-0.1
816
Normal
-0.1
924
Normal
-0.1
696
Normal
-0.1
922
Normal
-0.1
358
Normal
-0.1
878
Normal
-0.1
534
Normal
-0.1
882
Normal
-0.1
516
Normal
-0.1
568
Normal
-0.1
628
Normal
-0.1
756
Normal
-0.1
874
Normal
-0.1
128
Normal
-0.1
362
Normal
-0.1
217
Tumor
-0.1
368
Normal
-0.1
524
Normal
-0.1
354
Normal
-0.1
433
Tumor
-0.1
738
Normal
-0.1
862
Normal
-0.2
914
Normal
-0.2
513
Tumor
-0.2
138
Normal
-0.2
498
Normal
-0.2
636
Normal
-0.2
452
Normal
-0.2
172
Normal
-0.2
422
Normal
-0.2
494
Normal
-0.2
214
Normal
-0.2
142
Normal
-0.2
386
Normal
-0.2
262
Normal
-0.2
722
Normal
-0.2
424
Normal
-0.2
472
Normal
-0.2
284
Normal
-0.2
232
Normal
-0.2
344
Normal
-0.2
671
Tumor
-0.2
466
Normal
-0.2
697
Tumor
-0.2
366
Normal
-0.2
975
Tumor
-0.2
518
Normal
-0.2
392
Normal
-0.2
192
Normal
-0.2
938
Normal
-0.2
272
Normal
-0.2
662
Normal
-0.2
966
Normal
-0.2
484
Normal
-0.2
672
Normal
-0.2
481
Tumor
-0.2
434
Normal
-0.2
261
Tumor
-0.2
482
Normal
-0.2
861
Tumor
-0.2
394
Normal
-0.2
384
Normal
-0.2
195
Tumor
-0.2
478
Normal
-0.2
488
Normal
-0.2
223
Tumor
-0.2
162
Normal
-0.2
721
Tumor
-0.2
414
Normal
-0.2
211
Tumor
-0.2
977
Tumor
-0.2
546
Normal
-0.3
857
Tumor
-0.3
473
Tumor
-0.3
343
Tumor
-0.3
956
Normal
-0.3
141
Tumor
-0.3
388
Normal
-0.3
698
Normal
-0.3
535
Tumor
-0.3
744
Normal
-0.3
222
Normal
-0.3
383
Tumor
-0.3
196
Normal
-0.4
823
Tumor
-0.4
785
Tumor
-0.4
221
Tumor
-0.4
342
Normal
-0.4
635
Tumor
-0.4
493
Tumor
-0.5
483
Tumor
-0.5
385
Tumor
-0.5
213
Tumor
-0.7
915
Tumor
-0.8
515
Tumor
-0.8
867
Tumor
-0.8
527
Tumor
-1.1
357
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
